Wall clock time and date at job start Tue Mar 31 2020 19:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47028 * 2 1 4 4 H 1.09000 * 109.47107 * 54.05969 * 3 2 1 5 5 C 1.50696 * 109.47374 * 174.06110 * 3 2 1 6 6 H 1.07999 * 120.00299 * 120.00016 * 5 3 2 7 7 C 1.37880 * 119.99712 * 300.00126 * 5 3 2 8 8 N 1.31517 * 119.99962 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00086 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46891 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46820 * 119.99532 * 9 7 5 12 12 H 1.48498 * 109.47387 * 240.00153 * 9 7 5 13 13 N 1.46505 * 109.46963 * 294.06164 * 3 2 1 14 14 S 1.65600 * 119.99898 * 115.36639 * 13 3 2 15 15 O 1.42103 * 106.40104 * 176.20451 * 14 13 3 16 16 O 1.42104 * 106.40524 * 309.12549 * 14 13 3 17 17 C 1.76199 * 107.21875 * 62.66541 * 14 13 3 18 18 C 1.38056 * 120.06014 * 244.68107 * 17 14 13 19 19 C 1.38287 * 120.11463 * 179.76927 * 18 17 14 20 20 C 1.38342 * 120.23895 * 0.51070 * 19 18 17 21 21 C 1.38005 * 120.11866 * 359.74376 * 20 19 18 22 22 C 1.39284 * 120.06064 * 64.95806 * 17 14 13 23 23 C 1.48462 * 120.11314 * 359.95856 * 22 17 14 24 24 N 1.34052 * 126.67553 * 353.13180 * 23 22 17 25 25 N 1.28982 * 107.26690 * 179.87635 * 24 23 22 26 26 N 1.28737 * 108.94867 * 0.40293 * 25 24 23 27 27 H 0.96990 * 125.34738 * 179.77054 * 26 25 24 28 28 N 1.28877 * 109.31028 * 359.74647 * 26 25 24 29 29 H 1.09000 * 109.46844 * 58.28772 * 1 2 3 30 30 H 1.08996 * 109.47830 * 298.28779 * 1 2 3 31 31 H 1.09007 * 109.46950 * 178.28504 * 1 2 3 32 32 H 1.09001 * 109.46504 * 119.99741 * 2 1 3 33 33 H 1.09000 * 109.47521 * 239.99846 * 2 1 3 34 34 H 0.97004 * 119.99680 * 180.02562 * 8 7 5 35 35 H 0.96998 * 119.99534 * 295.36430 * 13 3 2 36 36 H 1.07996 * 119.93767 * 359.97438 * 18 17 14 37 37 H 1.08002 * 119.88273 * 180.25170 * 19 18 17 38 38 H 1.08006 * 119.94087 * 179.76823 * 20 19 18 39 39 H 1.08000 * 120.05888 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5924 1.9861 0.8320 5 6 3.5398 1.4451 0.1470 6 1 4.1570 1.8855 -0.6221 7 6 4.1240 0.8853 1.2634 8 7 3.3723 0.3494 2.2002 9 14 5.9831 0.8878 1.4454 10 1 6.5952 1.5466 0.2636 11 1 6.3590 1.6303 2.6753 12 1 6.4730 -0.5107 1.5421 13 7 1.6718 2.0906 -1.2613 14 16 0.6199 3.3696 -1.2587 15 8 0.5385 3.8248 -2.6024 16 8 -0.5136 2.9555 -0.5083 17 6 1.3785 4.6670 -0.3390 18 6 0.8136 5.0971 0.8450 19 6 1.4107 6.1120 1.5702 20 6 2.5703 6.7088 1.1088 21 6 3.1404 6.2901 -0.0762 22 6 2.5460 5.2645 -0.8081 23 6 3.1550 4.8096 -2.0833 24 7 2.7732 3.7588 -2.8230 25 7 3.5537 3.7087 -3.8486 26 7 4.4042 4.6723 -3.7741 27 1 5.1036 4.8546 -4.4209 28 7 4.1801 5.3569 -2.7055 29 1 -0.3633 0.5402 -0.8742 30 1 -0.3634 0.4870 0.9049 31 1 -0.3633 -1.0273 -0.0308 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.7833 -0.0441 2.9858 35 1 2.0442 1.7705 -2.0977 36 1 -0.0943 4.6378 1.2072 37 1 0.9678 6.4428 2.4980 38 1 3.0305 7.5037 1.6771 39 1 4.0455 6.7571 -0.4357 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590420296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:05 Heat of formation + Delta-G solvation = 98.338534 kcal Electronic energy + Delta-G solvation = -28646.520244 eV Core-core repulsion = 24720.398743 eV Total energy + Delta-G solvation = -3926.121501 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.25138 -39.04072 -36.55056 -35.75531 -35.03696 -34.17172 -33.44966 -32.11405 -31.15668 -30.44999 -30.30009 -26.53915 -24.75945 -24.43661 -22.88626 -22.70812 -21.57816 -19.94560 -19.26911 -18.64960 -17.51670 -17.00322 -16.84434 -16.24714 -16.04940 -15.40212 -14.94098 -14.58472 -14.32352 -13.93039 -13.59829 -13.51862 -13.07743 -12.96426 -12.78235 -12.38356 -11.91542 -11.64292 -11.60053 -11.46322 -11.37457 -11.25071 -11.17246 -11.03120 -10.81314 -10.79034 -10.76648 -10.55473 -10.36379 -10.14618 -9.84645 -9.56118 -9.33209 -9.18514 -8.63484 -8.45428 -8.02375 -6.07765 -4.14881 0.62191 1.15829 1.34725 1.43469 2.38555 2.53933 3.21870 3.30501 3.32642 3.67177 3.74244 3.96240 4.30249 4.37596 4.50589 4.84996 5.01021 5.13482 5.21902 5.38633 5.44668 5.56188 5.70869 5.79624 5.98941 6.23255 6.29131 6.39960 6.40163 6.50884 6.53687 6.56136 6.82388 6.88352 7.06510 7.24655 7.38848 7.70976 7.79309 8.06837 8.16115 8.31578 8.42341 8.89165 9.50782 10.96540 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.006762 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.406903 B = 4139.579623 C = 4595.878501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.280 3.720 4 H 0.043 0.957 5 C -0.518 4.518 6 H 0.057 0.943 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.283 1.283 13 N -1.082 6.082 14 S 2.694 3.306 15 O -0.964 6.964 16 O -0.970 6.970 17 C -0.632 4.632 18 C -0.021 4.021 19 C -0.124 4.124 20 C -0.076 4.076 21 C -0.104 4.104 22 C 0.090 3.910 23 C 0.201 3.799 24 N -0.233 5.233 25 N -0.038 5.038 26 N -0.233 5.233 27 H 0.473 0.527 28 N -0.287 5.287 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.030 0.970 32 H 0.101 0.899 33 H 0.037 0.963 34 H 0.262 0.738 35 H 0.414 0.586 36 H 0.149 0.851 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.574 11.281 -5.121 12.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C 0.175 3.825 4 H 0.061 0.939 5 C -0.558 4.558 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.845 5.845 14 S 2.780 3.220 15 O -0.953 6.953 16 O -0.960 6.960 17 C -0.717 4.717 18 C -0.040 4.040 19 C -0.143 4.143 20 C -0.094 4.094 21 C -0.125 4.125 22 C 0.086 3.914 23 C -0.079 4.079 24 N -0.107 5.107 25 N -0.034 5.034 26 N -0.078 5.078 27 H 0.327 0.673 28 N -0.139 5.139 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.119 0.881 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.250 0.750 36 H 0.166 0.834 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.244 10.913 -5.683 12.307 hybrid contribution 2.425 0.595 0.316 2.517 sum 2.181 11.509 -5.366 12.884 Atomic orbital electron populations 1.21823 0.98418 0.98869 1.01225 1.21898 0.92544 0.99591 1.02677 1.18519 0.94738 0.90198 0.79042 0.93911 1.21420 0.91442 1.37878 1.05017 0.92437 1.24880 0.97850 0.95171 0.95775 1.69875 1.34559 1.38591 1.09304 0.86571 0.85965 0.77752 0.77850 1.20207 1.21009 1.20888 1.55394 1.66047 1.46141 1.16880 1.01851 0.73777 0.73390 0.72982 1.93541 1.86338 1.81579 1.33802 1.93554 1.47556 1.81150 1.73704 1.31350 1.07788 1.21064 1.11476 1.20957 0.98521 0.93719 0.90813 1.21396 0.96161 0.96721 1.00048 1.21281 0.94888 0.98387 0.94819 1.21178 1.00055 0.96254 0.95014 1.16555 0.92174 0.94816 0.87838 1.23598 0.93346 0.93117 0.97855 1.76076 1.17867 1.16767 1.00015 1.78886 0.98424 1.08656 1.17428 1.47632 1.25228 1.17874 1.17026 0.67308 1.74742 1.18176 1.21900 0.99047 0.94010 0.93218 0.95086 0.88070 0.94404 0.92768 0.75025 0.83362 0.84821 0.84880 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.25 37.16 0.34 -2.77 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.28 6.71 2.23 -69.08 -0.15 6.56 16 4 H 0.04 1.10 7.81 -51.93 -0.41 0.70 16 5 C -0.52 -13.41 8.84 -34.44 -0.30 -13.72 16 6 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.91 11.29 55.43 0.63 -23.28 16 9 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -1.08 -23.11 3.75 -5.88 -0.02 -23.13 16 14 S 2.69 55.05 4.76 -107.50 -0.51 54.54 16 15 O -0.96 -20.62 14.86 -57.17 -0.85 -21.47 16 16 O -0.97 -20.96 15.15 -57.17 -0.87 -21.83 16 17 C -0.63 -11.79 5.86 -39.26 -0.23 -12.02 16 18 C -0.02 -0.34 9.54 -39.63 -0.38 -0.72 16 19 C -0.12 -1.64 10.04 -39.53 -0.40 -2.03 16 20 C -0.08 -0.95 10.03 -39.63 -0.40 -1.34 16 21 C -0.10 -1.52 9.70 -39.26 -0.38 -1.90 16 22 C 0.09 1.61 5.87 -104.89 -0.62 1.00 16 23 C 0.20 3.65 7.57 -156.30 -1.18 2.47 16 24 N -0.23 -4.45 5.76 32.16 0.19 -4.27 16 25 N -0.04 -0.61 13.47 60.35 0.81 0.20 16 26 N -0.23 -2.93 7.90 60.35 0.48 -2.45 16 27 H 0.47 3.25 8.96 -340.37 -3.05 0.20 16 28 N -0.29 -4.34 12.10 32.17 0.39 -3.95 16 29 H 0.04 0.87 6.76 -51.93 -0.35 0.52 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 2.60 5.93 -51.93 -0.31 2.29 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.41 8.52 7.66 -34.48 -0.26 8.25 16 36 H 0.15 2.26 7.33 -52.49 -0.38 1.87 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 39 H 0.14 1.69 7.90 -52.49 -0.41 1.28 16 LS Contribution 338.59 15.07 5.10 5.10 Total: -1.00 -33.23 338.59 -10.45 -43.68 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.84 Total: 7.16 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -3.94 Total: -25.98 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 2.47 Total: -56.88 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -1.72 Total: -43.29 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 55.05 SS G_CDS: -0.51 Total: 54.54 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.23 -10.45 -43.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590420296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.023 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds