Wall clock time and date at job start Tue Mar 31 2020 19:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47028 * 2 1 4 4 H 1.09000 * 109.47107 * 54.05969 * 3 2 1 5 5 C 1.50696 * 109.47374 * 174.06110 * 3 2 1 6 6 H 1.07999 * 120.00299 * 120.00016 * 5 3 2 7 7 C 1.37880 * 119.99712 * 300.00126 * 5 3 2 8 8 N 1.31517 * 119.99962 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00086 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46891 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46820 * 119.99532 * 9 7 5 12 12 H 1.48498 * 109.47387 * 240.00153 * 9 7 5 13 13 N 1.46505 * 109.46963 * 294.06164 * 3 2 1 14 14 S 1.65600 * 119.99898 * 115.36639 * 13 3 2 15 15 O 1.42103 * 106.40104 * 176.20451 * 14 13 3 16 16 O 1.42104 * 106.40524 * 309.12549 * 14 13 3 17 17 C 1.76199 * 107.21875 * 62.66541 * 14 13 3 18 18 C 1.38056 * 120.06014 * 244.68107 * 17 14 13 19 19 C 1.38287 * 120.11463 * 179.76927 * 18 17 14 20 20 C 1.38342 * 120.23895 * 0.51070 * 19 18 17 21 21 C 1.38005 * 120.11866 * 359.74376 * 20 19 18 22 22 C 1.39284 * 120.06064 * 64.95806 * 17 14 13 23 23 C 1.48462 * 120.11314 * 359.95856 * 22 17 14 24 24 N 1.34052 * 126.67553 * 353.13180 * 23 22 17 25 25 N 1.28982 * 107.26690 * 179.87635 * 24 23 22 26 26 N 1.28737 * 108.94867 * 0.40293 * 25 24 23 27 27 H 0.96990 * 125.34738 * 179.77054 * 26 25 24 28 28 N 1.28877 * 109.31028 * 359.74647 * 26 25 24 29 29 H 1.09000 * 109.46844 * 58.28772 * 1 2 3 30 30 H 1.08996 * 109.47830 * 298.28779 * 1 2 3 31 31 H 1.09007 * 109.46950 * 178.28504 * 1 2 3 32 32 H 1.09001 * 109.46504 * 119.99741 * 2 1 3 33 33 H 1.09000 * 109.47521 * 239.99846 * 2 1 3 34 34 H 0.97004 * 119.99680 * 180.02562 * 8 7 5 35 35 H 0.96998 * 119.99534 * 295.36430 * 13 3 2 36 36 H 1.07996 * 119.93767 * 359.97438 * 18 17 14 37 37 H 1.08002 * 119.88273 * 180.25170 * 19 18 17 38 38 H 1.08006 * 119.94087 * 179.76823 * 20 19 18 39 39 H 1.08000 * 120.05888 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5924 1.9861 0.8320 5 6 3.5398 1.4451 0.1470 6 1 4.1570 1.8855 -0.6221 7 6 4.1240 0.8853 1.2634 8 7 3.3723 0.3494 2.2002 9 14 5.9831 0.8878 1.4454 10 1 6.5952 1.5466 0.2636 11 1 6.3590 1.6303 2.6753 12 1 6.4730 -0.5107 1.5421 13 7 1.6718 2.0906 -1.2613 14 16 0.6199 3.3696 -1.2587 15 8 0.5385 3.8248 -2.6024 16 8 -0.5136 2.9555 -0.5083 17 6 1.3785 4.6670 -0.3390 18 6 0.8136 5.0971 0.8450 19 6 1.4107 6.1120 1.5702 20 6 2.5703 6.7088 1.1088 21 6 3.1404 6.2901 -0.0762 22 6 2.5460 5.2645 -0.8081 23 6 3.1550 4.8096 -2.0833 24 7 2.7732 3.7588 -2.8230 25 7 3.5537 3.7087 -3.8486 26 7 4.4042 4.6723 -3.7741 27 1 5.1036 4.8546 -4.4209 28 7 4.1801 5.3569 -2.7055 29 1 -0.3633 0.5402 -0.8742 30 1 -0.3634 0.4870 0.9049 31 1 -0.3633 -1.0273 -0.0308 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.7833 -0.0441 2.9858 35 1 2.0442 1.7705 -2.0977 36 1 -0.0943 4.6378 1.2072 37 1 0.9678 6.4428 2.4980 38 1 3.0305 7.5037 1.6771 39 1 4.0455 6.7571 -0.4357 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590420296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:04 Heat of formation + Delta-G solvation = 74.495401 kcal Electronic energy + Delta-G solvation = -28647.554159 eV Core-core repulsion = 24720.398743 eV Total energy + Delta-G solvation = -3927.155417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.47101 -40.17868 -38.19793 -37.55355 -36.67733 -35.43313 -34.65906 -34.06472 -32.32876 -32.08412 -31.58286 -28.47390 -25.96290 -25.66113 -24.77692 -23.91027 -22.77590 -21.80088 -20.54574 -20.09115 -19.00007 -18.56741 -18.13419 -17.93592 -17.31146 -17.08704 -16.55608 -15.87588 -15.72170 -15.29209 -15.21223 -14.79214 -14.76754 -14.57835 -14.24126 -13.59832 -13.46714 -13.35557 -13.11938 -13.03897 -12.97976 -12.94989 -12.67820 -12.56594 -12.46637 -12.30850 -12.05265 -11.99242 -11.94876 -11.75079 -11.60298 -11.44478 -11.21301 -10.46660 -10.35191 -9.80925 -9.78627 -8.07335 -6.20223 -0.60015 -0.23852 0.05483 0.22869 1.28991 1.38238 1.41148 1.41641 1.49849 2.26650 2.45825 2.53209 2.61423 2.98510 3.07455 3.19374 3.56972 3.94065 4.05527 4.14289 4.34635 4.38559 4.45450 4.57012 4.61242 4.70116 4.76484 4.87047 4.99791 5.08090 5.21971 5.23317 5.32403 5.42733 5.54937 5.63712 5.71258 5.82133 5.87536 6.14051 6.27539 6.59712 6.89959 7.07477 7.47784 8.96276 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.006762 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.406903 B = 4139.579623 C = 4595.878501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C 0.289 3.711 4 H 0.022 0.978 5 C -0.524 4.524 6 H 0.049 0.951 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.279 1.279 12 H -0.280 1.280 13 N -1.082 6.082 14 S 2.703 3.297 15 O -0.979 6.979 16 O -0.992 6.992 17 C -0.657 4.657 18 C -0.041 4.041 19 C -0.118 4.118 20 C -0.060 4.060 21 C -0.107 4.107 22 C 0.063 3.937 23 C 0.178 3.822 24 N -0.271 5.271 25 N -0.049 5.049 26 N -0.200 5.200 27 H 0.495 0.505 28 N -0.275 5.275 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.415 0.585 36 H 0.148 0.852 37 H 0.173 0.827 38 H 0.182 0.818 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.141 13.175 -4.432 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.183 3.817 4 H 0.039 0.961 5 C -0.564 4.564 6 H 0.067 0.933 7 C -0.175 4.175 8 N -0.547 5.547 9 Si 0.773 3.227 10 H -0.202 1.202 11 H -0.205 1.205 12 H -0.206 1.206 13 N -0.843 5.843 14 S 2.793 3.207 15 O -0.968 6.968 16 O -0.982 6.982 17 C -0.747 4.747 18 C -0.060 4.060 19 C -0.137 4.137 20 C -0.078 4.078 21 C -0.128 4.128 22 C 0.059 3.941 23 C -0.102 4.102 24 N -0.144 5.144 25 N -0.045 5.045 26 N -0.051 5.051 27 H 0.355 0.645 28 N -0.127 5.127 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.251 0.749 36 H 0.165 0.835 37 H 0.191 0.809 38 H 0.199 0.801 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.312 12.767 -5.049 13.792 hybrid contribution 1.998 0.142 0.088 2.005 sum 3.310 12.909 -4.961 14.220 Atomic orbital electron populations 1.21737 0.96881 1.00278 1.00730 1.21807 0.93939 0.99138 1.01645 1.18227 0.93769 0.90243 0.79444 0.96050 1.21569 0.92338 1.37646 1.04857 0.93251 1.25507 1.01446 0.95004 0.95592 1.69981 1.35955 1.39099 1.09650 0.85694 0.81576 0.77702 0.77699 1.20231 1.20472 1.20630 1.55233 1.66024 1.47115 1.15969 1.01234 0.73297 0.73417 0.72735 1.93511 1.86601 1.81704 1.34978 1.93513 1.48875 1.81877 1.73961 1.30914 1.09335 1.21532 1.12882 1.21213 0.99029 0.95119 0.90687 1.21883 0.96061 0.95061 1.00740 1.21882 0.93863 0.98261 0.93795 1.21581 1.00608 0.95219 0.95385 1.16863 0.92488 0.96274 0.88502 1.23874 0.94280 0.93455 0.98558 1.76012 1.19305 1.18033 1.01052 1.78799 0.98976 1.09600 1.17078 1.47710 1.24559 1.16276 1.16541 0.64526 1.74685 1.17229 1.21588 0.99238 0.93951 0.94187 0.92728 0.90210 0.94159 0.92663 0.74900 0.83470 0.80916 0.80062 0.82371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.00 9.25 71.98 0.67 -5.33 16 2 C -0.13 -6.00 5.45 30.60 0.17 -5.84 16 3 C 0.29 14.24 2.23 44.24 0.10 14.34 16 4 H 0.02 1.15 7.81 -2.39 -0.02 1.13 16 5 C -0.52 -27.52 8.84 25.60 0.23 -27.29 16 6 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 7 C 0.02 1.30 5.29 84.66 0.45 1.75 16 8 N -0.91 -49.43 11.29 21.45 0.24 -49.19 16 9 Si 0.95 42.12 29.54 68.60 2.03 44.15 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 13 N -1.08 -47.77 3.75 -172.52 -0.65 -48.41 16 14 S 2.70 114.32 4.76 -56.49 -0.27 114.05 16 15 O -0.98 -43.35 14.86 -128.00 -1.90 -45.26 16 16 O -0.99 -44.54 15.15 -128.00 -1.94 -46.48 16 17 C -0.66 -24.81 5.86 22.48 0.13 -24.68 16 18 C -0.04 -1.32 9.54 22.24 0.21 -1.11 16 19 C -0.12 -2.78 10.04 22.31 0.22 -2.55 16 20 C -0.06 -1.27 10.03 22.24 0.22 -1.04 16 21 C -0.11 -2.86 9.70 22.47 0.22 -2.64 16 22 C 0.06 2.22 5.87 -20.04 -0.12 2.10 16 23 C 0.18 6.43 7.57 137.38 1.04 7.47 16 24 N -0.27 -10.48 5.76 -52.18 -0.30 -10.78 16 25 N -0.05 -1.57 13.47 37.02 0.50 -1.07 16 26 N -0.20 -4.77 7.90 37.02 0.29 -4.48 16 27 H 0.50 5.84 8.96 -347.54 -3.12 2.73 16 28 N -0.27 -7.93 12.10 -52.13 -0.63 -8.56 16 29 H 0.04 1.79 6.76 -2.39 -0.02 1.78 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.08 4.19 5.93 -2.39 -0.01 4.18 16 33 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 35 H 0.41 17.78 7.66 -96.74 -0.74 17.04 16 36 H 0.15 4.57 7.33 -2.91 -0.02 4.55 16 37 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 38 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 39 H 0.16 3.41 7.90 -2.91 -0.02 3.38 16 Total: -1.00 -73.06 338.59 -1.82 -74.87 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -2.73 Total: 25.99 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 3.54 Total: -44.82 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -0.54 Total: -122.50 kcal Atomic # 8 Polarization: -87.90 SS G_CDS: -3.84 Total: -91.74 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: 114.32 SS G_CDS: -0.27 Total: 114.05 kcal Total: -73.06 -1.82 -74.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590420296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.370 kcal (2) G-P(sol) polarization free energy of solvation -73.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds