Wall clock time and date at job start Tue Mar 31 2020 20:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47007 * 2 1 4 4 C 1.36932 * 120.00246 * 275.97560 * 3 2 1 5 5 H 1.08001 * 120.00550 * 146.59874 * 4 3 2 6 6 C 1.38818 * 119.99905 * 326.59764 * 4 3 2 7 7 N 1.31619 * 119.99915 * 336.10683 * 6 4 3 8 8 Si 1.86801 * 119.99948 * 156.10669 * 6 4 3 9 9 H 1.48497 * 109.47077 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47265 * 119.99921 * 8 6 4 11 11 H 1.48508 * 109.46889 * 240.00243 * 8 6 4 12 12 S 1.65602 * 119.99715 * 95.97487 * 3 2 1 13 13 O 1.42103 * 106.40247 * 156.45653 * 12 3 2 14 14 O 1.42101 * 106.40006 * 23.54068 * 12 3 2 15 15 C 1.76198 * 107.21762 * 269.99770 * 12 3 2 16 16 C 1.38344 * 119.87873 * 90.00409 * 15 12 3 17 17 C 1.37999 * 120.11343 * 179.97438 * 16 15 12 18 18 C 1.39325 * 119.88520 * 359.97438 * 17 16 15 19 19 C 1.48464 * 120.12066 * 179.72462 * 18 17 16 20 20 N 1.34038 * 126.67715 * 179.68799 * 19 18 17 21 21 N 1.28990 * 107.27092 * 179.89399 * 20 19 18 22 22 N 1.28724 * 108.94156 * 0.37545 * 21 20 19 23 23 H 0.97002 * 125.34587 * 179.78858 * 22 21 20 24 24 N 1.28873 * 109.31950 * 359.76248 * 22 21 20 25 25 C 1.39282 * 119.76239 * 0.02562 * 18 17 16 26 26 C 1.50702 * 120.05489 * 179.97438 * 25 18 17 27 27 C 1.38048 * 119.88121 * 359.97438 * 25 18 17 28 28 H 1.09008 * 109.46915 * 299.99758 * 1 2 3 29 29 H 1.08998 * 109.47036 * 59.99265 * 1 2 3 30 30 H 1.08995 * 109.46974 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46845 * 240.00067 * 2 1 3 32 32 H 1.09002 * 109.47437 * 120.00452 * 2 1 3 33 33 H 0.96997 * 119.99866 * 179.97438 * 7 6 4 34 34 H 1.07996 * 119.94138 * 359.97438 * 16 15 12 35 35 H 1.07997 * 120.06226 * 180.02562 * 17 16 15 36 36 H 1.09007 * 109.46906 * 89.99987 * 26 25 18 37 37 H 1.09004 * 109.46784 * 209.99848 * 26 25 18 38 38 H 1.08998 * 109.47495 * 329.99887 * 26 25 18 39 39 H 1.08001 * 119.93613 * 180.02562 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1302 2.0679 -1.1794 5 1 1.9552 3.1334 -1.2027 6 6 2.4685 1.3946 -2.3452 7 7 3.1245 0.2553 -2.2804 8 14 1.9928 2.1053 -4.0059 9 1 1.2663 3.3851 -3.8069 10 1 3.2177 2.3506 -4.8087 11 1 1.1154 1.1449 -4.7224 12 16 2.4351 2.1121 1.4264 13 8 3.3461 3.1507 1.0939 14 8 2.7471 1.0665 2.3367 15 6 0.9882 2.9002 2.0508 16 6 0.1348 2.2083 2.8916 17 6 -0.9995 2.8210 3.3838 18 6 -1.2843 4.1390 3.0331 19 6 -2.5063 4.8013 3.5548 20 7 -2.9030 6.0577 3.3088 21 7 -4.0102 6.2412 3.9447 22 7 -4.3123 5.1618 4.5776 23 1 -5.0968 5.0389 5.1348 24 7 -3.4093 4.2698 4.3546 25 6 -0.4217 4.8309 2.1863 26 6 -0.7237 6.2566 1.8022 27 6 0.7103 4.2085 1.6995 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8935 -0.5139 0.8899 33 1 3.3606 -0.2153 -3.0950 34 1 0.3567 1.1868 3.1631 35 1 -1.6649 2.2802 4.0404 36 1 -0.2639 6.9323 2.5235 37 1 -0.3227 6.4579 0.8088 38 1 -1.8027 6.4106 1.7966 39 1 1.3799 4.7444 1.0432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590679916.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:24 Heat of formation + Delta-G solvation = 91.621856 kcal Electronic energy + Delta-G solvation = -27206.421391 eV Core-core repulsion = 23280.008633 eV Total energy + Delta-G solvation = -3926.412758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.69222 -39.34048 -36.18559 -35.87069 -34.80312 -34.68429 -33.81015 -32.61888 -31.66623 -30.69388 -29.22979 -27.06720 -25.19095 -24.61152 -24.37815 -22.01485 -21.75337 -21.40791 -19.37818 -18.48585 -17.45104 -17.37274 -16.89161 -16.35349 -16.06146 -15.56972 -14.70695 -14.48833 -14.12917 -14.09427 -13.80986 -13.43426 -13.27732 -12.90215 -12.77849 -12.46061 -12.31413 -12.12968 -12.02584 -11.91998 -11.60430 -11.31912 -11.18414 -11.16010 -11.04185 -10.96972 -10.90898 -10.85717 -10.82509 -10.38218 -10.18648 -10.13591 -9.78147 -9.11532 -8.90184 -8.62729 -7.72645 -6.26368 -3.94268 0.39824 0.93979 1.42389 1.47044 1.99061 2.11185 3.20194 3.29553 3.33715 3.45868 3.60900 3.98047 4.15118 4.46541 4.73354 4.79836 4.85899 5.02486 5.05990 5.20130 5.32254 5.43198 5.49038 5.75119 5.79650 5.87717 6.02377 6.08496 6.09628 6.19898 6.25579 6.37031 6.37943 6.39551 6.51944 6.60276 6.90514 6.93709 7.30435 7.42313 7.79393 7.91549 8.42789 9.00331 9.37862 10.75216 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.003746 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.714868 B = 7473.535630 C = 7977.963440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.109 3.891 3 N -0.839 5.839 4 C -0.284 4.284 5 H 0.093 0.907 6 C 0.039 3.961 7 N -0.856 5.856 8 Si 0.914 3.086 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.281 1.281 12 S 2.628 3.372 13 O -0.968 6.968 14 O -0.994 6.994 15 C -0.626 4.626 16 C -0.036 4.036 17 C -0.100 4.100 18 C 0.008 3.992 19 C 0.225 3.775 20 N -0.262 5.262 21 N -0.055 5.055 22 N -0.227 5.227 23 H 0.475 0.525 24 N -0.292 5.292 25 C -0.063 4.063 26 C -0.130 4.130 27 C -0.022 4.022 28 H 0.037 0.963 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.117 0.883 32 H 0.060 0.940 33 H 0.267 0.733 34 H 0.144 0.856 35 H 0.136 0.864 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.036 5.740 9.888 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.672 5.672 4 C -0.420 4.420 5 H 0.111 0.889 6 C -0.168 4.168 7 N -0.495 5.495 8 Si 0.740 3.260 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.207 1.207 12 S 2.724 3.276 13 O -0.958 6.958 14 O -0.984 6.984 15 C -0.710 4.710 16 C -0.055 4.055 17 C -0.121 4.121 18 C 0.005 3.995 19 C -0.054 4.054 20 N -0.135 5.135 21 N -0.049 5.049 22 N -0.073 5.073 23 H 0.329 0.671 24 N -0.143 5.143 25 C -0.066 4.066 26 C -0.186 4.186 27 C -0.041 4.041 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.134 0.866 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.162 0.838 35 H 0.154 0.846 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.606 6.179 10.420 18.218 hybrid contribution -1.217 -0.016 -0.395 1.279 sum -14.823 6.162 10.026 18.927 Atomic orbital electron populations 1.22209 0.98698 1.00038 1.01364 1.21399 0.91645 0.83906 1.04844 1.52612 1.76495 1.20653 1.17390 1.19136 1.45029 0.94041 0.83764 0.88948 1.25304 0.95080 0.96843 0.99581 1.69978 1.33894 1.16833 1.28840 0.86088 0.78512 0.79250 0.82133 1.19145 1.20774 1.20683 1.04950 0.73856 0.74027 0.74728 1.93449 1.59306 1.59489 1.83551 1.93420 1.82622 1.55750 1.66580 1.31786 1.23627 1.05886 1.09664 1.20815 0.91873 0.99745 0.93018 1.21160 0.97690 0.93141 1.00086 1.17308 0.89745 0.93613 0.98874 1.23718 0.96507 0.89166 0.96048 1.76173 1.04144 1.15073 1.18094 1.78937 1.10274 1.10349 1.05376 1.47715 1.20072 1.06007 1.33523 0.67114 1.74954 1.01145 1.18988 1.19237 1.20033 0.93770 0.97105 0.95658 1.21203 1.04815 0.90889 1.01736 1.20824 0.94909 0.92570 0.95793 0.94357 0.92219 0.93386 0.86610 0.92183 0.92285 0.83827 0.84586 0.90790 0.91074 0.88445 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 10.20 37.16 0.38 -2.62 16 2 C 0.11 2.39 6.01 -4.04 -0.02 2.36 16 3 N -0.84 -19.88 2.85 -59.91 -0.17 -20.05 16 4 C -0.28 -7.14 8.87 -15.06 -0.13 -7.27 16 5 H 0.09 2.25 7.94 -52.49 -0.42 1.83 16 6 C 0.04 0.99 4.98 -17.43 -0.09 0.90 16 7 N -0.86 -22.40 11.27 55.49 0.63 -21.77 16 8 Si 0.91 19.55 29.62 -169.99 -5.03 14.52 16 9 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 12 S 2.63 59.23 5.65 -107.50 -0.61 58.62 16 13 O -0.97 -24.33 16.48 -57.17 -0.94 -25.27 16 14 O -0.99 -23.50 15.82 -57.17 -0.90 -24.41 16 15 C -0.63 -11.61 5.98 -39.52 -0.24 -11.85 16 16 C -0.04 -0.57 8.51 -39.63 -0.34 -0.91 16 17 C -0.10 -1.42 9.70 -39.26 -0.38 -1.80 16 18 C 0.01 0.12 5.88 -104.89 -0.62 -0.50 16 19 C 0.22 2.96 7.79 -156.31 -1.22 1.74 16 20 N -0.26 -3.36 9.08 32.15 0.29 -3.07 16 21 N -0.05 -0.58 13.47 60.35 0.81 0.24 16 22 N -0.23 -1.81 7.90 60.35 0.48 -1.34 16 23 H 0.47 1.35 8.96 -340.37 -3.05 -1.70 16 24 N -0.29 -3.21 12.08 32.17 0.39 -2.82 16 25 C -0.06 -0.95 5.91 -104.30 -0.62 -1.57 16 26 C -0.13 -1.66 9.20 36.01 0.33 -1.33 16 27 C -0.02 -0.38 9.16 -39.63 -0.36 -0.74 16 28 H 0.04 0.64 7.11 -51.92 -0.37 0.27 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.12 2.78 5.31 -51.93 -0.28 2.50 16 32 H 0.06 1.28 6.90 -51.93 -0.36 0.92 16 33 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 34 H 0.14 2.16 7.61 -52.49 -0.40 1.76 16 35 H 0.14 1.59 7.88 -52.49 -0.41 1.18 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 38 H 0.10 1.25 5.15 -51.93 -0.27 0.98 16 39 H 0.15 2.48 7.60 -52.49 -0.40 2.08 16 LS Contribution 343.00 15.07 5.17 5.17 Total: -1.00 -32.23 343.00 -9.97 -42.20 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.77 Total: 1.56 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -3.30 Total: -23.57 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 2.43 Total: -48.82 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -1.85 Total: -49.68 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Atomic # 16 Polarization: 59.23 SS G_CDS: -0.61 Total: 58.62 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.23 -9.97 -42.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590679916.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.823 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds