Wall clock time and date at job start Tue Mar 31 2020 20:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47007 * 2 1 4 4 C 1.36932 * 120.00246 * 275.97560 * 3 2 1 5 5 H 1.08001 * 120.00550 * 146.59874 * 4 3 2 6 6 C 1.38818 * 119.99905 * 326.59764 * 4 3 2 7 7 N 1.31619 * 119.99915 * 336.10683 * 6 4 3 8 8 Si 1.86801 * 119.99948 * 156.10669 * 6 4 3 9 9 H 1.48497 * 109.47077 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47265 * 119.99921 * 8 6 4 11 11 H 1.48508 * 109.46889 * 240.00243 * 8 6 4 12 12 S 1.65602 * 119.99715 * 95.97487 * 3 2 1 13 13 O 1.42103 * 106.40247 * 156.45653 * 12 3 2 14 14 O 1.42101 * 106.40006 * 23.54068 * 12 3 2 15 15 C 1.76198 * 107.21762 * 269.99770 * 12 3 2 16 16 C 1.38344 * 119.87873 * 90.00409 * 15 12 3 17 17 C 1.37999 * 120.11343 * 179.97438 * 16 15 12 18 18 C 1.39325 * 119.88520 * 359.97438 * 17 16 15 19 19 C 1.48464 * 120.12066 * 179.72462 * 18 17 16 20 20 N 1.34038 * 126.67715 * 179.68799 * 19 18 17 21 21 N 1.28990 * 107.27092 * 179.89399 * 20 19 18 22 22 N 1.28724 * 108.94156 * 0.37545 * 21 20 19 23 23 H 0.97002 * 125.34587 * 179.78858 * 22 21 20 24 24 N 1.28873 * 109.31950 * 359.76248 * 22 21 20 25 25 C 1.39282 * 119.76239 * 0.02562 * 18 17 16 26 26 C 1.50702 * 120.05489 * 179.97438 * 25 18 17 27 27 C 1.38048 * 119.88121 * 359.97438 * 25 18 17 28 28 H 1.09008 * 109.46915 * 299.99758 * 1 2 3 29 29 H 1.08998 * 109.47036 * 59.99265 * 1 2 3 30 30 H 1.08995 * 109.46974 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46845 * 240.00067 * 2 1 3 32 32 H 1.09002 * 109.47437 * 120.00452 * 2 1 3 33 33 H 0.96997 * 119.99866 * 179.97438 * 7 6 4 34 34 H 1.07996 * 119.94138 * 359.97438 * 16 15 12 35 35 H 1.07997 * 120.06226 * 180.02562 * 17 16 15 36 36 H 1.09007 * 109.46906 * 89.99987 * 26 25 18 37 37 H 1.09004 * 109.46784 * 209.99848 * 26 25 18 38 38 H 1.08998 * 109.47495 * 329.99887 * 26 25 18 39 39 H 1.08001 * 119.93613 * 180.02562 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1302 2.0679 -1.1794 5 1 1.9552 3.1334 -1.2027 6 6 2.4685 1.3946 -2.3452 7 7 3.1245 0.2553 -2.2804 8 14 1.9928 2.1053 -4.0059 9 1 1.2663 3.3851 -3.8069 10 1 3.2177 2.3506 -4.8087 11 1 1.1154 1.1449 -4.7224 12 16 2.4351 2.1121 1.4264 13 8 3.3461 3.1507 1.0939 14 8 2.7471 1.0665 2.3367 15 6 0.9882 2.9002 2.0508 16 6 0.1348 2.2083 2.8916 17 6 -0.9995 2.8210 3.3838 18 6 -1.2843 4.1390 3.0331 19 6 -2.5063 4.8013 3.5548 20 7 -2.9030 6.0577 3.3088 21 7 -4.0102 6.2412 3.9447 22 7 -4.3123 5.1618 4.5776 23 1 -5.0968 5.0389 5.1348 24 7 -3.4093 4.2698 4.3546 25 6 -0.4217 4.8309 2.1863 26 6 -0.7237 6.2566 1.8022 27 6 0.7103 4.2085 1.6995 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8935 -0.5139 0.8899 33 1 3.3606 -0.2153 -3.0950 34 1 0.3567 1.1868 3.1631 35 1 -1.6649 2.2802 4.0404 36 1 -0.2639 6.9323 2.5235 37 1 -0.3227 6.4579 0.8088 38 1 -1.8027 6.4106 1.7966 39 1 1.3799 4.7444 1.0432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590679916.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:23 Heat of formation + Delta-G solvation = 69.296273 kcal Electronic energy + Delta-G solvation = -27207.389501 eV Core-core repulsion = 23280.008633 eV Total energy + Delta-G solvation = -3927.380868 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.55069 -40.55011 -38.03827 -37.66814 -36.58793 -35.70731 -34.77581 -33.75065 -33.51055 -31.84166 -30.91698 -28.18141 -26.47521 -26.18754 -25.34570 -23.37568 -23.12292 -22.66430 -20.33358 -20.17290 -19.05352 -18.40398 -18.22193 -18.09940 -17.47186 -16.90149 -16.46783 -16.01374 -15.41248 -15.25237 -15.13128 -14.91339 -14.51955 -14.33473 -14.17337 -13.96218 -13.70662 -13.43655 -13.23954 -13.09380 -12.96105 -12.90534 -12.81266 -12.64327 -12.55616 -12.48178 -12.32765 -12.20575 -12.05664 -11.96824 -11.90522 -11.59878 -11.46322 -10.90272 -10.12931 -9.82875 -9.56844 -8.14494 -5.88562 -0.78014 -0.24921 0.08465 0.20996 1.04128 1.35238 1.50139 1.53922 1.65899 2.27912 2.46111 2.51328 2.74007 2.94347 3.03589 3.21446 3.47362 3.75023 3.89493 4.00951 4.18766 4.30003 4.32275 4.43506 4.47081 4.71478 4.77560 4.77997 4.83086 4.87114 5.00609 5.01531 5.08327 5.25854 5.33506 5.44328 5.53926 5.57372 5.67029 5.70448 5.99639 6.54714 7.04781 7.11734 7.48494 8.87287 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.003746 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.714868 B = 7473.535630 C = 7977.963440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.103 3.897 3 N -0.852 5.852 4 C -0.305 4.305 5 H 0.092 0.908 6 C -0.002 4.002 7 N -0.890 5.890 8 Si 0.972 3.028 9 H -0.259 1.259 10 H -0.285 1.285 11 H -0.274 1.274 12 S 2.638 3.362 13 O -1.005 7.005 14 O -1.013 7.013 15 C -0.637 4.637 16 C -0.040 4.040 17 C -0.089 4.089 18 C 0.016 3.984 19 C 0.206 3.794 20 N -0.279 5.279 21 N -0.055 5.055 22 N -0.195 5.195 23 H 0.496 0.504 24 N -0.283 5.283 25 C -0.064 4.064 26 C -0.127 4.127 27 C -0.035 4.035 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.269 0.731 34 H 0.153 0.847 35 H 0.167 0.833 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.223 6.566 11.060 21.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.024 4.024 3 N -0.684 5.684 4 C -0.439 4.439 5 H 0.109 0.891 6 C -0.206 4.206 7 N -0.531 5.531 8 Si 0.797 3.203 9 H -0.182 1.182 10 H -0.211 1.211 11 H -0.200 1.200 12 S 2.739 3.261 13 O -0.995 6.995 14 O -1.003 7.003 15 C -0.726 4.726 16 C -0.059 4.059 17 C -0.110 4.110 18 C 0.012 3.988 19 C -0.073 4.073 20 N -0.150 5.150 21 N -0.049 5.049 22 N -0.046 5.046 23 H 0.356 0.644 24 N -0.136 5.136 25 C -0.067 4.067 26 C -0.184 4.184 27 C -0.054 4.054 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.171 0.829 35 H 0.185 0.815 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.771 6.979 11.563 21.533 hybrid contribution -0.403 -0.208 -0.532 0.699 sum -17.175 6.771 11.031 21.506 Atomic orbital electron populations 1.22102 0.95758 1.01880 1.01582 1.21444 0.94141 0.83121 1.03694 1.52681 1.77074 1.21210 1.17402 1.19331 1.45606 0.94225 0.84772 0.89084 1.26058 0.94843 0.97192 1.02515 1.70078 1.35126 1.18194 1.29669 0.85197 0.78032 0.78990 0.78122 1.18227 1.21133 1.19971 1.03962 0.74670 0.73376 0.74124 1.93397 1.61899 1.60131 1.84113 1.93386 1.83797 1.56621 1.66505 1.31022 1.22830 1.06632 1.12152 1.20982 0.92133 1.00191 0.92595 1.21409 0.96977 0.93038 0.99533 1.17482 0.89922 0.93693 0.97672 1.23456 0.96804 0.89617 0.97448 1.76152 1.04931 1.15112 1.18853 1.78905 1.09712 1.10804 1.05511 1.47789 1.19853 1.04754 1.32199 0.64437 1.74904 1.01031 1.19293 1.18392 1.20213 0.92963 0.98124 0.95414 1.21244 1.05179 0.89601 1.02361 1.20852 0.95916 0.92273 0.96397 0.92851 0.93202 0.90700 0.88784 0.92267 0.92168 0.82908 0.81545 0.89784 0.90475 0.88018 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.51 10.20 71.98 0.73 -4.77 16 2 C 0.10 4.58 6.01 86.38 0.52 5.10 16 3 N -0.85 -41.41 2.85 -343.44 -0.98 -42.39 16 4 C -0.30 -15.73 8.87 84.04 0.75 -14.98 16 5 H 0.09 4.58 7.94 -2.91 -0.02 4.56 16 6 C 0.00 -0.10 4.98 84.86 0.42 0.32 16 7 N -0.89 -47.97 11.27 21.65 0.24 -47.72 16 8 Si 0.97 40.53 29.62 68.60 2.03 42.56 16 9 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 10 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 12 S 2.64 122.20 5.65 -56.49 -0.32 121.88 16 13 O -1.01 -52.61 16.48 -128.00 -2.11 -54.72 16 14 O -1.01 -48.99 15.82 -128.00 -2.02 -51.01 16 15 C -0.64 -23.57 5.98 22.31 0.13 -23.43 16 16 C -0.04 -1.23 8.51 22.24 0.19 -1.04 16 17 C -0.09 -2.27 9.70 22.47 0.22 -2.05 16 18 C 0.02 0.42 5.88 -20.04 -0.12 0.30 16 19 C 0.21 4.79 7.79 137.38 1.07 5.86 16 20 N -0.28 -6.35 9.08 -52.18 -0.47 -6.83 16 21 N -0.05 -0.98 13.47 37.02 0.50 -0.48 16 22 N -0.19 -2.35 7.90 37.02 0.29 -2.06 16 23 H 0.50 0.74 8.96 -347.54 -3.12 -2.37 16 24 N -0.28 -5.15 12.08 -52.13 -0.63 -5.78 16 25 C -0.06 -1.85 5.91 -19.66 -0.12 -1.97 16 26 C -0.13 -3.05 9.20 71.24 0.66 -2.40 16 27 C -0.04 -1.20 9.16 22.24 0.20 -1.00 16 28 H 0.05 1.71 7.11 -2.38 -0.02 1.70 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.09 4.67 5.31 -2.39 -0.01 4.65 16 32 H 0.06 2.58 6.90 -2.39 -0.02 2.56 16 33 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 34 H 0.15 4.36 7.61 -2.91 -0.02 4.34 16 35 H 0.17 3.21 7.88 -2.91 -0.02 3.18 16 36 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.08 1.73 8.09 -2.38 -0.02 1.72 16 38 H 0.10 2.40 5.15 -2.39 -0.01 2.39 16 39 H 0.14 4.90 7.60 -2.91 -0.02 4.88 16 Total: -1.00 -70.68 343.00 -0.80 -71.48 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -1.99 Total: 15.13 kcal Atomic # 6 Polarization: -44.72 SS G_CDS: 4.66 Total: -40.07 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -1.05 Total: -105.26 kcal Atomic # 8 Polarization: -101.59 SS G_CDS: -4.13 Total: -105.73 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Atomic # 16 Polarization: 122.20 SS G_CDS: -0.32 Total: 121.88 kcal Total: -70.68 -0.80 -71.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590679916.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.775 kcal (2) G-P(sol) polarization free energy of solvation -70.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds