Wall clock time and date at job start Tue Mar 31 2020 19:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38043 * 120.06342 * 2 1 4 4 C 1.38288 * 120.11973 * 180.02562 * 3 2 1 5 5 S 1.76200 * 119.88375 * 180.02562 * 4 3 2 6 6 O 1.42100 * 106.40054 * 23.52242 * 5 4 3 7 7 O 1.42102 * 106.40445 * 156.44020 * 5 4 3 8 8 N 1.65600 * 107.22089 * 269.98212 * 5 4 3 9 9 C 1.46500 * 119.99956 * 65.00250 * 8 5 4 10 10 C 1.52993 * 109.47170 * 165.00077 * 9 8 5 11 11 C 1.50703 * 109.47320 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99682 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00258 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99954 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99827 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46778 * 90.00083 * 15 13 11 17 17 H 1.48496 * 109.47001 * 209.99729 * 15 13 11 18 18 H 1.48495 * 109.47318 * 330.00324 * 15 13 11 19 19 C 1.38342 * 120.23692 * 0.02562 * 4 3 2 20 20 C 1.38002 * 120.11461 * 359.97438 * 19 4 3 21 21 C 1.39278 * 120.05452 * 180.02562 * 2 1 3 22 22 C 1.48464 * 120.11925 * 0.25464 * 21 2 1 23 23 N 1.34044 * 126.67367 * 359.40938 * 22 21 2 24 24 N 1.28986 * 107.27191 * 179.89266 * 23 22 21 25 25 N 1.28737 * 108.93831 * 0.37728 * 24 23 22 26 26 H 0.97007 * 125.33873 * 179.78833 * 25 24 23 27 27 N 1.28869 * 109.32001 * 359.75740 * 25 24 23 28 28 H 1.09002 * 109.46818 * 269.98279 * 1 2 3 29 29 H 1.09002 * 109.46526 * 29.97490 * 1 2 3 30 30 H 1.08997 * 109.47183 * 149.98156 * 1 2 3 31 31 H 1.08001 * 119.94065 * 0.04267 * 3 2 1 32 32 H 0.96993 * 120.00028 * 244.99601 * 8 5 4 33 33 H 1.09003 * 109.46954 * 284.99836 * 9 8 5 34 34 H 1.09002 * 109.47218 * 44.99357 * 9 8 5 35 35 H 1.09003 * 109.46986 * 299.99740 * 10 9 8 36 36 H 1.09002 * 109.47638 * 59.99537 * 10 9 8 37 37 H 0.97001 * 119.99871 * 179.97438 * 14 13 11 38 38 H 1.07993 * 119.94153 * 180.02562 * 19 4 3 39 39 H 1.08000 * 120.06018 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1986 1.1947 0.0000 4 6 3.5815 1.1961 -0.0005 5 16 4.4579 2.7247 0.0002 6 8 3.5733 3.6941 0.5452 7 8 5.7417 2.4509 0.5443 8 7 4.7016 3.1508 -1.5814 9 6 3.5571 3.4671 -2.4395 10 6 4.0477 4.1763 -3.7032 11 6 2.8704 4.5010 -4.5862 12 1 1.8722 4.2284 -4.2771 13 6 3.0677 5.1462 -5.7887 14 7 2.0404 5.4291 -6.5594 15 14 4.7943 5.6183 -6.3229 16 1 5.3918 4.5064 -7.1052 17 1 4.7352 6.8400 -7.1650 18 1 5.6285 5.8837 -5.1234 19 6 4.2793 0.0016 -0.0016 20 6 3.5978 -1.1984 -0.0016 21 6 2.2046 -1.2055 -0.0005 22 6 1.4662 -2.4935 -0.0068 23 7 0.1353 -2.6534 -0.0013 24 7 -0.0980 -3.9219 -0.0123 25 7 1.0239 -4.5531 -0.0163 26 1 1.1249 -5.5179 -0.0215 27 7 1.9918 -3.7023 -0.0132 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3632 0.8903 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6587 2.1301 0.0007 32 1 5.6020 3.1911 -1.9396 33 1 3.0445 2.5456 -2.7158 34 1 2.8684 4.1184 -1.9013 35 1 4.5602 5.0978 -3.4269 36 1 4.7363 3.5249 -4.2414 37 1 2.1792 5.8833 -7.4052 38 1 5.3592 0.0082 -0.0016 39 1 4.1435 -2.1305 -0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592064812.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:49 Heat of formation + Delta-G solvation = 76.191747 kcal Electronic energy + Delta-G solvation = -26055.324634 eV Core-core repulsion = 22128.242776 eV Total energy + Delta-G solvation = -3927.081857 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.86006 -39.71972 -37.13321 -35.74281 -35.57326 -34.98219 -34.04107 -32.91981 -32.70391 -31.06616 -29.71527 -27.37153 -25.45976 -24.61786 -24.58542 -22.33881 -21.97724 -20.90978 -19.62890 -19.18005 -17.78999 -17.54069 -17.29140 -16.82086 -16.63352 -16.07650 -15.35859 -14.57114 -14.50909 -14.24422 -14.18882 -14.12798 -13.96020 -13.57533 -13.20884 -12.68950 -12.65148 -12.43066 -12.20731 -12.16229 -11.98690 -11.89934 -11.78015 -11.63126 -11.51339 -11.44790 -11.33165 -11.16538 -10.76948 -10.48100 -10.07710 -9.89931 -9.36683 -9.30966 -9.07375 -8.96935 -8.61033 -6.11583 -4.11663 0.02769 0.55452 0.77103 1.05586 1.83173 1.84097 3.09053 3.22558 3.26377 3.34974 3.37089 3.39256 3.77786 3.85824 4.30082 4.38650 4.54244 4.71825 4.80084 4.99077 5.04496 5.15271 5.22257 5.25925 5.52827 5.60466 5.65462 5.67161 5.81726 5.86396 5.96766 6.04424 6.10885 6.24126 6.28546 6.49524 6.53531 7.10989 7.20256 7.27640 7.67954 7.74911 8.41913 8.91533 9.49136 11.01261 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.003104 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.361774 B = 9019.139179 C =10306.471192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.058 4.058 3 C -0.020 4.020 4 C -0.651 4.651 5 S 2.693 3.307 6 O -0.954 6.954 7 O -0.967 6.967 8 N -1.113 6.113 9 C 0.125 3.875 10 C -0.018 4.018 11 C -0.525 4.525 12 H 0.076 0.924 13 C 0.070 3.930 14 N -0.898 5.898 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.264 1.264 19 C -0.030 4.030 20 C -0.099 4.099 21 C 0.024 3.976 22 C 0.217 3.783 23 N -0.259 5.259 24 N -0.050 5.050 25 N -0.225 5.225 26 H 0.476 0.524 27 N -0.288 5.288 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.152 0.848 32 H 0.416 0.584 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.026 0.974 36 H 0.019 0.981 37 H 0.265 0.735 38 H 0.148 0.852 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 -19.381 14.715 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.061 4.061 3 C -0.039 4.039 4 C -0.737 4.737 5 S 2.781 3.219 6 O -0.943 6.943 7 O -0.957 6.957 8 N -0.874 5.874 9 C 0.000 4.000 10 C -0.057 4.057 11 C -0.563 4.563 12 H 0.094 0.906 13 C -0.132 4.132 14 N -0.537 5.537 15 Si 0.707 3.293 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.049 4.049 20 C -0.120 4.120 21 C 0.020 3.980 22 C -0.062 4.062 23 N -0.131 5.131 24 N -0.045 5.045 25 N -0.071 5.071 26 H 0.331 0.669 27 N -0.140 5.140 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.170 0.830 32 H 0.251 0.749 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.045 0.955 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.165 0.835 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.588 -19.262 15.355 24.640 hybrid contribution 1.341 -0.835 -0.995 1.867 sum 1.930 -20.096 14.360 24.775 Atomic orbital electron populations 1.21260 0.89145 1.05099 1.03539 1.20085 0.97406 0.91178 0.97440 1.20885 0.91886 0.98843 0.92328 1.31308 1.06400 1.21093 1.14890 1.01929 0.73367 0.73728 0.72914 1.93597 1.67130 1.56963 1.76648 1.93567 1.39348 1.85808 1.76980 1.55522 1.16520 1.84481 1.30918 1.21497 0.85909 0.99817 0.92769 1.19758 0.98004 0.95819 0.92085 1.20949 0.93792 1.38659 1.02921 0.90559 1.24987 0.96867 0.95090 0.96287 1.69898 1.30198 1.41447 1.12130 0.86785 0.85254 0.78279 0.79001 1.20278 1.21297 1.18874 1.20806 1.00479 0.90413 0.93214 1.21215 0.92242 0.99131 0.99393 1.17401 0.92243 0.86616 1.01727 1.23643 0.88343 0.92311 1.01928 1.76189 1.13595 1.05717 1.17642 1.78980 1.10799 1.00381 1.14308 1.47740 1.01129 1.12474 1.45720 0.66927 1.74932 1.17874 0.99611 1.21572 0.90460 0.90629 0.88157 0.83034 0.74887 0.92226 0.90532 0.95548 0.96258 0.92561 0.83481 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.20 36.01 0.33 -1.09 16 2 C -0.06 -0.70 5.91 -104.30 -0.62 -1.31 16 3 C -0.02 -0.26 9.16 -39.63 -0.36 -0.62 16 4 C -0.65 -8.36 5.95 -39.52 -0.24 -8.59 16 5 S 2.69 38.74 5.73 -107.50 -0.62 38.13 16 6 O -0.95 -16.30 16.74 -57.17 -0.96 -17.25 16 7 O -0.97 -15.09 17.27 -57.17 -0.99 -16.08 16 8 N -1.11 -16.51 6.00 -10.61 -0.06 -16.57 16 9 C 0.12 2.24 6.16 -4.05 -0.02 2.22 16 10 C -0.02 -0.39 4.18 -27.89 -0.12 -0.50 16 11 C -0.52 -14.14 9.66 -34.44 -0.33 -14.48 16 12 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -26.83 13.96 55.43 0.77 -26.06 16 15 Si 0.88 20.85 27.47 -169.99 -4.67 16.18 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 19 C -0.03 -0.34 9.51 -39.63 -0.38 -0.72 16 20 C -0.10 -1.05 9.70 -39.26 -0.38 -1.43 16 21 C 0.02 0.27 5.88 -104.89 -0.62 -0.34 16 22 C 0.22 2.40 7.79 -156.30 -1.22 1.19 16 23 N -0.26 -2.90 9.08 32.16 0.29 -2.60 16 24 N -0.05 -0.46 13.47 60.35 0.81 0.35 16 25 N -0.22 -1.46 7.90 60.35 0.48 -0.99 16 26 H 0.48 0.72 8.96 -340.36 -3.05 -2.33 16 27 N -0.29 -2.64 12.08 32.17 0.39 -2.25 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.10 1.11 5.15 -51.93 -0.27 0.85 16 31 H 0.15 1.80 7.60 -52.49 -0.40 1.40 16 32 H 0.42 5.46 8.65 -34.47 -0.30 5.16 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.40 7.75 -51.93 -0.40 0.99 16 35 H 0.03 0.58 7.20 -51.93 -0.37 0.21 16 36 H 0.02 0.41 7.57 -51.93 -0.39 0.01 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.15 1.39 7.61 -52.49 -0.40 0.99 16 39 H 0.14 1.19 7.88 -52.49 -0.41 0.78 16 LS Contribution 348.07 15.07 5.25 5.25 Total: -1.00 -35.42 348.07 -10.20 -45.62 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.85 Total: 0.09 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -4.05 Total: -23.82 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 2.68 Total: -48.12 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -1.94 Total: -33.33 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.18 kcal Atomic # 16 Polarization: 38.74 SS G_CDS: -0.62 Total: 38.13 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.42 -10.20 -45.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592064812.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.811 kcal (2) G-P(sol) polarization free energy of solvation -35.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds