Wall clock time and date at job start Tue Mar 31 2020 19:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38043 * 120.06342 * 2 1 4 4 C 1.38288 * 120.11973 * 180.02562 * 3 2 1 5 5 S 1.76200 * 119.88375 * 180.02562 * 4 3 2 6 6 O 1.42100 * 106.40054 * 23.52242 * 5 4 3 7 7 O 1.42102 * 106.40445 * 156.44020 * 5 4 3 8 8 N 1.65600 * 107.22089 * 269.98212 * 5 4 3 9 9 C 1.46500 * 119.99956 * 65.00250 * 8 5 4 10 10 C 1.52993 * 109.47170 * 165.00077 * 9 8 5 11 11 C 1.50703 * 109.47320 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99682 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00258 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99954 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99827 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46778 * 90.00083 * 15 13 11 17 17 H 1.48496 * 109.47001 * 209.99729 * 15 13 11 18 18 H 1.48495 * 109.47318 * 330.00324 * 15 13 11 19 19 C 1.38342 * 120.23692 * 0.02562 * 4 3 2 20 20 C 1.38002 * 120.11461 * 359.97438 * 19 4 3 21 21 C 1.39278 * 120.05452 * 180.02562 * 2 1 3 22 22 C 1.48464 * 120.11925 * 0.25464 * 21 2 1 23 23 N 1.34044 * 126.67367 * 359.40938 * 22 21 2 24 24 N 1.28986 * 107.27191 * 179.89266 * 23 22 21 25 25 N 1.28737 * 108.93831 * 0.37728 * 24 23 22 26 26 H 0.97007 * 125.33873 * 179.78833 * 25 24 23 27 27 N 1.28869 * 109.32001 * 359.75740 * 25 24 23 28 28 H 1.09002 * 109.46818 * 269.98279 * 1 2 3 29 29 H 1.09002 * 109.46526 * 29.97490 * 1 2 3 30 30 H 1.08997 * 109.47183 * 149.98156 * 1 2 3 31 31 H 1.08001 * 119.94065 * 0.04267 * 3 2 1 32 32 H 0.96993 * 120.00028 * 244.99601 * 8 5 4 33 33 H 1.09003 * 109.46954 * 284.99836 * 9 8 5 34 34 H 1.09002 * 109.47218 * 44.99357 * 9 8 5 35 35 H 1.09003 * 109.46986 * 299.99740 * 10 9 8 36 36 H 1.09002 * 109.47638 * 59.99537 * 10 9 8 37 37 H 0.97001 * 119.99871 * 179.97438 * 14 13 11 38 38 H 1.07993 * 119.94153 * 180.02562 * 19 4 3 39 39 H 1.08000 * 120.06018 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1986 1.1947 0.0000 4 6 3.5815 1.1961 -0.0005 5 16 4.4579 2.7247 0.0002 6 8 3.5733 3.6941 0.5452 7 8 5.7417 2.4509 0.5443 8 7 4.7016 3.1508 -1.5814 9 6 3.5571 3.4671 -2.4395 10 6 4.0477 4.1763 -3.7032 11 6 2.8704 4.5010 -4.5862 12 1 1.8722 4.2284 -4.2771 13 6 3.0677 5.1462 -5.7887 14 7 2.0404 5.4291 -6.5594 15 14 4.7943 5.6183 -6.3229 16 1 5.3918 4.5064 -7.1052 17 1 4.7352 6.8400 -7.1650 18 1 5.6285 5.8837 -5.1234 19 6 4.2793 0.0016 -0.0016 20 6 3.5978 -1.1984 -0.0016 21 6 2.2046 -1.2055 -0.0005 22 6 1.4662 -2.4935 -0.0068 23 7 0.1353 -2.6534 -0.0013 24 7 -0.0980 -3.9219 -0.0123 25 7 1.0239 -4.5531 -0.0163 26 1 1.1249 -5.5179 -0.0215 27 7 1.9918 -3.7023 -0.0132 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3632 0.8903 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6587 2.1301 0.0007 32 1 5.6020 3.1911 -1.9396 33 1 3.0445 2.5456 -2.7158 34 1 2.8684 4.1184 -1.9013 35 1 4.5602 5.0978 -3.4269 36 1 4.7363 3.5249 -4.2414 37 1 2.1792 5.8833 -7.4052 38 1 5.3592 0.0082 -0.0016 39 1 4.1435 -2.1305 -0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592064812.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:48 Heat of formation + Delta-G solvation = 48.944008 kcal Electronic energy + Delta-G solvation = -26056.506184 eV Core-core repulsion = 22128.242776 eV Total energy + Delta-G solvation = -3928.263408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.57635 -40.59999 -38.36956 -37.06517 -36.96824 -35.74019 -34.81813 -34.67531 -33.76552 -31.91681 -31.48411 -28.22800 -26.37400 -26.25104 -25.39517 -23.19668 -22.92487 -22.55667 -20.53110 -20.16786 -19.08945 -18.63494 -18.35105 -18.24627 -17.56400 -17.19630 -16.46613 -16.22184 -15.65212 -15.58629 -15.34305 -15.22319 -14.92570 -14.60134 -14.40922 -14.13713 -13.57087 -13.49457 -13.40464 -13.28280 -13.26007 -13.17347 -13.06679 -12.96523 -12.51607 -12.37570 -12.29721 -12.18888 -12.08001 -11.78166 -11.76850 -11.62392 -11.40914 -10.74187 -10.37215 -10.19354 -9.86812 -8.25019 -6.29906 -0.88667 -0.56606 0.05205 0.17524 0.99524 1.32864 1.41005 1.43878 1.54526 1.98854 2.37656 2.40328 2.50351 2.74364 3.01079 3.11014 3.25860 3.70780 3.77096 3.99348 4.11917 4.20114 4.25406 4.30200 4.39240 4.52803 4.67249 4.70458 4.79692 4.84837 4.91501 4.94716 5.00639 5.24675 5.41473 5.43712 5.50013 5.54393 5.65821 5.66450 6.11630 6.30969 6.78501 7.02091 7.34551 8.91118 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.003104 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.361774 B = 9019.139179 C =10306.471192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.068 4.068 3 C -0.035 4.035 4 C -0.657 4.657 5 S 2.713 3.287 6 O -0.984 6.984 7 O -0.976 6.976 8 N -1.108 6.108 9 C 0.135 3.865 10 C -0.018 4.018 11 C -0.531 4.531 12 H 0.041 0.959 13 C 0.006 3.994 14 N -0.949 5.949 15 Si 0.948 3.052 16 H -0.265 1.265 17 H -0.290 1.290 18 H -0.242 1.242 19 C -0.031 4.031 20 C -0.094 4.094 21 C 0.020 3.980 22 C 0.201 3.799 23 N -0.280 5.280 24 N -0.056 5.056 25 N -0.195 5.195 26 H 0.496 0.504 27 N -0.283 5.283 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.151 0.849 32 H 0.426 0.574 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.030 0.970 36 H 0.036 0.964 37 H 0.266 0.734 38 H 0.168 0.832 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.220 -21.269 15.300 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.071 4.071 3 C -0.054 4.054 4 C -0.746 4.746 5 S 2.804 3.196 6 O -0.974 6.974 7 O -0.966 6.966 8 N -0.870 5.870 9 C 0.009 3.991 10 C -0.057 4.057 11 C -0.570 4.570 12 H 0.059 0.941 13 C -0.191 4.191 14 N -0.590 5.590 15 Si 0.771 3.229 16 H -0.190 1.190 17 H -0.216 1.216 18 H -0.165 1.165 19 C -0.050 4.050 20 C -0.115 4.115 21 C 0.016 3.984 22 C -0.078 4.078 23 N -0.152 5.152 24 N -0.051 5.051 25 N -0.046 5.046 26 H 0.356 0.644 27 N -0.135 5.135 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.168 0.832 32 H 0.263 0.737 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.185 0.815 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.683 -21.153 15.961 26.635 hybrid contribution 0.598 -0.434 -1.118 1.340 sum 3.281 -21.587 14.843 26.403 Atomic orbital electron populations 1.21261 0.88599 1.04991 1.04017 1.20216 0.97986 0.91233 0.97670 1.20971 0.92096 0.99252 0.93066 1.30982 1.06309 1.20558 1.16755 1.01102 0.72729 0.73647 0.72152 1.93557 1.67805 1.58862 1.77210 1.93550 1.40009 1.86083 1.76960 1.55297 1.16229 1.84861 1.30589 1.21169 0.86606 0.99743 0.91577 1.19701 0.96312 0.96696 0.93014 1.21331 0.94204 1.37825 1.03671 0.94059 1.25964 1.01405 0.95267 0.96496 1.70059 1.32921 1.43126 1.12894 0.85699 0.79957 0.77981 0.79262 1.19045 1.21586 1.16523 1.21106 1.01530 0.89978 0.92372 1.21477 0.91915 0.99856 0.98253 1.17594 0.92882 0.86833 1.01048 1.23597 0.88441 0.92639 1.03157 1.76174 1.13931 1.06597 1.18460 1.78934 1.11411 1.00023 1.14699 1.47811 1.00091 1.13334 1.43370 0.64433 1.74885 1.18234 0.99280 1.21150 0.89699 0.90460 0.88495 0.83152 0.73739 0.91373 0.91338 0.95217 0.94614 0.92540 0.81469 0.81711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.20 71.24 0.66 -2.14 16 2 C -0.07 -1.60 5.91 -19.66 -0.12 -1.71 16 3 C -0.03 -0.87 9.16 22.24 0.20 -0.66 16 4 C -0.66 -16.15 5.95 22.31 0.13 -16.01 16 5 S 2.71 75.25 5.73 -56.49 -0.32 74.93 16 6 O -0.98 -33.50 16.74 -128.00 -2.14 -35.64 16 7 O -0.98 -28.79 17.27 -128.00 -2.21 -31.00 16 8 N -1.11 -31.18 6.00 -187.49 -1.12 -32.30 16 9 C 0.13 4.75 6.16 86.38 0.53 5.28 16 10 C -0.02 -0.78 4.18 29.85 0.12 -0.65 16 11 C -0.53 -29.00 9.66 25.60 0.25 -28.75 16 12 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 13 C 0.01 0.33 5.47 84.66 0.46 0.79 16 14 N -0.95 -58.09 13.96 21.45 0.30 -57.79 16 15 Si 0.95 42.31 27.47 68.60 1.88 44.19 16 16 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 19 C -0.03 -0.63 9.51 22.24 0.21 -0.42 16 20 C -0.09 -1.79 9.70 22.48 0.22 -1.57 16 21 C 0.02 0.43 5.88 -20.04 -0.12 0.32 16 22 C 0.20 4.14 7.79 137.38 1.07 5.21 16 23 N -0.28 -5.97 9.08 -52.18 -0.47 -6.44 16 24 N -0.06 -0.95 13.47 37.02 0.50 -0.45 16 25 N -0.19 -2.09 7.90 37.02 0.29 -1.79 16 26 H 0.50 0.17 8.96 -347.52 -3.12 -2.94 16 27 N -0.28 -4.51 12.08 -52.13 -0.63 -5.14 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 30 H 0.10 2.15 5.15 -2.39 -0.01 2.13 16 31 H 0.15 3.67 7.60 -2.91 -0.02 3.65 16 32 H 0.43 10.20 8.65 -96.75 -0.84 9.36 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.07 2.52 7.75 -2.39 -0.02 2.50 16 35 H 0.03 1.25 7.20 -2.39 -0.02 1.23 16 36 H 0.04 1.42 7.57 -2.39 -0.02 1.40 16 37 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.17 2.68 7.61 -2.91 -0.02 2.66 16 39 H 0.17 2.26 7.88 -2.91 -0.02 2.24 16 Total: -1.00 -76.14 348.07 -3.18 -79.32 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -2.87 Total: 12.45 kcal Atomic # 6 Polarization: -43.95 SS G_CDS: 3.62 Total: -40.33 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -1.14 Total: -103.92 kcal Atomic # 8 Polarization: -62.29 SS G_CDS: -4.35 Total: -66.64 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.19 kcal Atomic # 16 Polarization: 75.25 SS G_CDS: -0.32 Total: 74.93 kcal Total: -76.14 -3.18 -79.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592064812.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.260 kcal (2) G-P(sol) polarization free energy of solvation -76.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds