Wall clock time and date at job start Tue Mar 31 2020 19:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38333 * 119.93741 * 2 1 4 4 C 1.38296 * 120.23704 * 179.97438 * 3 2 1 5 5 C 1.38054 * 120.11637 * 0.03239 * 4 3 2 6 6 S 1.76201 * 120.06166 * 179.97438 * 5 4 3 7 7 O 1.42099 * 106.40080 * 129.92440 * 6 5 4 8 8 O 1.42095 * 106.40095 * 357.00221 * 6 5 4 9 9 N 1.65598 * 107.21550 * 243.46703 * 6 5 4 10 10 C 1.46498 * 120.00363 * 64.48769 * 9 6 5 11 11 H 1.08996 * 109.47133 * 22.77265 * 10 9 6 12 12 C 1.53006 * 109.47111 * 262.77506 * 10 9 6 13 13 C 1.50700 * 109.46964 * 142.77414 * 10 9 6 14 14 H 1.07997 * 120.00486 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99671 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00140 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99845 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.46785 * 90.00508 * 17 15 13 19 19 H 1.48506 * 109.47084 * 210.00335 * 17 15 13 20 20 H 1.48496 * 109.47306 * 330.00378 * 17 15 13 21 21 C 1.39281 * 119.87931 * 0.21817 * 5 4 3 22 22 C 1.48458 * 120.11716 * 179.74708 * 21 5 4 23 23 N 1.34045 * 126.67265 * 353.24645 * 22 21 5 24 24 N 1.28997 * 107.26740 * 179.83451 * 23 22 21 25 25 N 1.28730 * 108.94023 * 0.42830 * 24 23 22 26 26 H 0.97001 * 125.33883 * 179.72172 * 25 24 23 27 27 N 1.28871 * 109.31995 * 359.73260 * 25 24 23 28 28 C 1.38001 * 119.94289 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.46869 * 90.00530 * 1 2 3 30 30 H 1.09005 * 109.46660 * 209.99849 * 1 2 3 31 31 H 1.08996 * 109.47176 * 330.00021 * 1 2 3 32 32 H 1.08002 * 119.88522 * 359.96362 * 3 2 1 33 33 H 1.07994 * 119.94277 * 179.97438 * 4 3 2 34 34 H 0.97003 * 119.99710 * 244.49275 * 9 6 5 35 35 H 1.08998 * 109.47159 * 179.97438 * 12 10 9 36 36 H 1.09003 * 109.47122 * 59.99907 * 12 10 9 37 37 H 1.08996 * 109.46925 * 299.99886 * 12 10 9 38 38 H 0.97006 * 119.99926 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.05865 * 0.04945 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2060 0.0005 5 6 4.2793 0.0155 0.0004 6 16 6.0413 0.0263 0.0004 7 8 6.4479 -0.8461 1.0457 8 8 6.4341 1.3901 -0.0707 9 7 6.5357 -0.6771 -1.4149 10 6 6.2267 -0.0393 -2.6970 11 1 6.0495 1.0247 -2.5402 12 6 4.9745 -0.6816 -3.2975 13 6 7.3869 -0.2216 -3.6413 14 1 8.2663 -0.7591 -3.3189 15 6 7.3252 0.2971 -4.9174 16 7 6.2541 0.9512 -5.3102 17 14 8.7636 0.0717 -6.0877 18 1 8.5832 -1.1854 -6.8573 19 1 8.8238 1.2219 -7.0252 20 1 10.0272 -0.0004 -5.3109 21 6 3.5891 -1.1943 -0.0049 22 6 4.3354 -2.4777 -0.0107 23 7 5.6608 -2.6325 -0.1381 24 7 5.9049 -3.8982 -0.0898 25 7 4.7939 -4.5329 0.0521 26 1 4.7020 -5.4967 0.1114 27 7 3.8231 -3.6869 0.1026 28 6 2.1959 -1.1958 0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6545 2.1324 -0.0006 33 1 4.1145 2.1446 0.0001 34 1 7.0300 -1.5115 -1.3949 35 1 4.7443 -0.2068 -4.2512 36 1 4.1354 -0.5498 -2.6144 37 1 5.1517 -1.7456 -3.4543 38 1 6.2108 1.3164 -6.2079 39 1 1.6559 -2.1312 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592190570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:03 Heat of formation + Delta-G solvation = 97.953134 kcal Electronic energy + Delta-G solvation = -28188.776474 eV Core-core repulsion = 24262.638261 eV Total energy + Delta-G solvation = -3926.138213 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.37695 -39.41623 -36.50258 -35.39535 -35.03860 -34.37629 -33.74271 -32.67869 -32.02510 -30.60182 -28.14461 -27.41989 -25.15047 -24.85055 -24.38413 -22.14135 -21.42913 -20.77044 -19.26221 -18.62612 -17.48399 -17.09503 -17.00656 -16.11956 -15.78786 -15.56634 -15.03920 -14.45689 -14.29038 -14.01536 -13.97390 -13.68841 -13.41160 -12.64523 -12.51833 -12.50047 -12.40355 -12.07917 -11.93269 -11.62567 -11.46412 -11.39135 -11.28461 -11.14609 -11.00038 -10.92209 -10.84478 -10.72167 -10.51047 -10.34386 -10.24753 -9.96636 -9.11437 -9.03698 -8.72733 -8.50383 -8.08251 -6.03946 -4.09544 0.49890 1.05051 1.29913 1.31860 2.27610 2.40209 3.31486 3.38068 3.42834 3.52696 3.60618 3.96117 4.17419 4.42858 4.48869 4.68203 4.79792 4.97634 5.03237 5.28364 5.32677 5.38008 5.41655 5.53071 5.59164 5.68408 5.79269 5.93573 6.13012 6.17149 6.35583 6.43746 6.54118 6.78829 6.86563 6.93409 7.11367 7.68738 7.76905 8.05755 8.18348 8.20058 8.44480 8.94279 9.55539 11.02353 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011521 B = 0.005165 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.683746 B = 5419.918894 C = 6149.006313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.044 4.044 3 C -0.124 4.124 4 C -0.016 4.016 5 C -0.641 4.641 6 S 2.693 3.307 7 O -0.963 6.963 8 O -0.970 6.970 9 N -1.081 6.081 10 C 0.268 3.732 11 H 0.049 0.951 12 C -0.153 4.153 13 C -0.514 4.514 14 H 0.065 0.935 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.900 3.100 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.090 3.910 22 C 0.198 3.802 23 N -0.238 5.238 24 N -0.034 5.034 25 N -0.231 5.231 26 H 0.474 0.526 27 N -0.286 5.286 28 C -0.105 4.105 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.135 0.865 33 H 0.151 0.849 34 H 0.415 0.585 35 H 0.092 0.908 36 H 0.009 0.991 37 H 0.027 0.973 38 H 0.262 0.738 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.170 -6.860 10.434 17.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.044 4.044 3 C -0.143 4.143 4 C -0.035 4.035 5 C -0.725 4.725 6 S 2.779 3.221 7 O -0.952 6.952 8 O -0.959 6.959 9 N -0.845 5.845 10 C 0.163 3.837 11 H 0.067 0.933 12 C -0.212 4.212 13 C -0.554 4.554 14 H 0.083 0.917 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.727 3.273 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.197 1.197 21 C 0.086 3.914 22 C -0.082 4.082 23 N -0.112 5.112 24 N -0.030 5.030 25 N -0.076 5.076 26 H 0.328 0.672 27 N -0.137 5.137 28 C -0.126 4.126 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.153 0.847 33 H 0.168 0.832 34 H 0.252 0.748 35 H 0.110 0.890 36 H 0.028 0.972 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.292 -6.629 10.902 17.038 hybrid contribution -0.337 -1.057 -1.030 1.514 sum -11.629 -7.686 9.872 17.081 Atomic orbital electron populations 1.20889 0.90347 1.03211 1.03050 1.20042 0.96439 0.92757 0.95194 1.21298 0.94214 0.97956 1.00880 1.20968 0.94442 0.96909 0.91200 1.31458 1.29712 0.97336 1.14040 1.01898 0.73227 0.73396 0.73616 1.93535 1.80412 1.65984 1.55272 1.93550 1.80051 1.35312 1.87026 1.55459 1.69219 1.38569 1.21232 1.18563 0.93919 0.92300 0.78896 0.93294 1.22234 0.96653 0.99708 1.02612 1.21256 1.01478 1.35740 0.96879 0.91713 1.24908 0.96185 0.94921 0.97968 1.69871 1.27589 1.36514 1.18986 0.86473 0.82720 0.77518 0.80546 1.20804 1.21177 1.19718 1.16530 0.92052 0.85364 0.97465 1.23626 0.88991 0.92613 1.02962 1.76075 1.12514 1.07011 1.15607 1.78934 1.10502 0.99569 1.13970 1.47671 1.01540 1.12330 1.46059 0.67169 1.74757 1.17786 0.99484 1.21716 1.21037 0.92066 0.98640 1.00871 0.90317 0.91115 0.90943 0.84729 0.83171 0.74756 0.88976 0.97186 0.95384 0.92772 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.04 -0.52 5.87 -104.67 -0.61 -1.13 16 3 C -0.12 -1.55 9.69 -39.52 -0.38 -1.94 16 4 C -0.02 -0.25 9.54 -39.63 -0.38 -0.63 16 5 C -0.64 -11.49 5.05 -39.26 -0.20 -11.69 16 6 S 2.69 56.20 4.88 -107.50 -0.53 55.68 16 7 O -0.96 -20.82 15.06 -57.17 -0.86 -21.69 16 8 O -0.97 -22.41 16.34 -57.17 -0.93 -23.34 16 9 N -1.08 -23.90 4.32 -5.88 -0.03 -23.93 16 10 C 0.27 6.70 2.90 -69.08 -0.20 6.50 16 11 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 12 C -0.15 -3.61 9.29 37.16 0.35 -3.26 16 13 C -0.51 -13.97 8.77 -34.44 -0.30 -14.27 16 14 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 17 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.09 1.50 5.34 -104.89 -0.56 0.94 16 22 C 0.20 3.36 7.58 -156.31 -1.19 2.17 16 23 N -0.24 -4.37 5.63 32.15 0.18 -4.19 16 24 N -0.03 -0.52 13.47 60.35 0.81 0.29 16 25 N -0.23 -2.64 7.90 60.35 0.48 -2.17 16 26 H 0.47 2.74 8.96 -340.36 -3.05 -0.31 16 27 N -0.29 -3.94 12.10 32.17 0.39 -3.55 16 28 C -0.11 -1.42 9.35 -39.26 -0.37 -1.78 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.15 2.24 7.34 -52.49 -0.39 1.85 16 34 H 0.42 8.87 7.33 -34.47 -0.25 8.61 16 35 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 36 H 0.01 0.20 6.70 -51.93 -0.35 -0.15 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.14 1.55 7.90 -52.48 -0.41 1.14 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -34.75 339.02 -10.16 -44.91 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.81 Total: 5.00 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -3.58 Total: -24.07 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 2.46 Total: -57.75 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -1.80 Total: -45.03 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 56.20 SS G_CDS: -0.53 Total: 55.68 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.75 -10.16 -44.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592190570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.865 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds