Wall clock time and date at job start Tue Mar 31 2020 19:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38333 * 119.93741 * 2 1 4 4 C 1.38296 * 120.23704 * 179.97438 * 3 2 1 5 5 C 1.38054 * 120.11637 * 0.03239 * 4 3 2 6 6 S 1.76201 * 120.06166 * 179.97438 * 5 4 3 7 7 O 1.42099 * 106.40080 * 129.92440 * 6 5 4 8 8 O 1.42095 * 106.40095 * 357.00221 * 6 5 4 9 9 N 1.65598 * 107.21550 * 243.46703 * 6 5 4 10 10 C 1.46498 * 120.00363 * 64.48769 * 9 6 5 11 11 H 1.08996 * 109.47133 * 22.77265 * 10 9 6 12 12 C 1.53006 * 109.47111 * 262.77506 * 10 9 6 13 13 C 1.50700 * 109.46964 * 142.77414 * 10 9 6 14 14 H 1.07997 * 120.00486 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99671 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00140 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99845 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.46785 * 90.00508 * 17 15 13 19 19 H 1.48506 * 109.47084 * 210.00335 * 17 15 13 20 20 H 1.48496 * 109.47306 * 330.00378 * 17 15 13 21 21 C 1.39281 * 119.87931 * 0.21817 * 5 4 3 22 22 C 1.48458 * 120.11716 * 179.74708 * 21 5 4 23 23 N 1.34045 * 126.67265 * 353.24645 * 22 21 5 24 24 N 1.28997 * 107.26740 * 179.83451 * 23 22 21 25 25 N 1.28730 * 108.94023 * 0.42830 * 24 23 22 26 26 H 0.97001 * 125.33883 * 179.72172 * 25 24 23 27 27 N 1.28871 * 109.31995 * 359.73260 * 25 24 23 28 28 C 1.38001 * 119.94289 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.46869 * 90.00530 * 1 2 3 30 30 H 1.09005 * 109.46660 * 209.99849 * 1 2 3 31 31 H 1.08996 * 109.47176 * 330.00021 * 1 2 3 32 32 H 1.08002 * 119.88522 * 359.96362 * 3 2 1 33 33 H 1.07994 * 119.94277 * 179.97438 * 4 3 2 34 34 H 0.97003 * 119.99710 * 244.49275 * 9 6 5 35 35 H 1.08998 * 109.47159 * 179.97438 * 12 10 9 36 36 H 1.09003 * 109.47122 * 59.99907 * 12 10 9 37 37 H 1.08996 * 109.46925 * 299.99886 * 12 10 9 38 38 H 0.97006 * 119.99926 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.05865 * 0.04945 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2060 0.0005 5 6 4.2793 0.0155 0.0004 6 16 6.0413 0.0263 0.0004 7 8 6.4479 -0.8461 1.0457 8 8 6.4341 1.3901 -0.0707 9 7 6.5357 -0.6771 -1.4149 10 6 6.2267 -0.0393 -2.6970 11 1 6.0495 1.0247 -2.5402 12 6 4.9745 -0.6816 -3.2975 13 6 7.3869 -0.2216 -3.6413 14 1 8.2663 -0.7591 -3.3189 15 6 7.3252 0.2971 -4.9174 16 7 6.2541 0.9512 -5.3102 17 14 8.7636 0.0717 -6.0877 18 1 8.5832 -1.1854 -6.8573 19 1 8.8238 1.2219 -7.0252 20 1 10.0272 -0.0004 -5.3109 21 6 3.5891 -1.1943 -0.0049 22 6 4.3354 -2.4777 -0.0107 23 7 5.6608 -2.6325 -0.1381 24 7 5.9049 -3.8982 -0.0898 25 7 4.7939 -4.5329 0.0521 26 1 4.7020 -5.4967 0.1114 27 7 3.8231 -3.6869 0.1026 28 6 2.1959 -1.1958 0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6545 2.1324 -0.0006 33 1 4.1145 2.1446 0.0001 34 1 7.0300 -1.5115 -1.3949 35 1 4.7443 -0.2068 -4.2512 36 1 4.1354 -0.5498 -2.6144 37 1 5.1517 -1.7456 -3.4543 38 1 6.2108 1.3164 -6.2079 39 1 1.6559 -2.1312 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592190570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:02 Heat of formation + Delta-G solvation = 72.045532 kcal Electronic energy + Delta-G solvation = -28189.899912 eV Core-core repulsion = 24262.638261 eV Total energy + Delta-G solvation = -3927.261651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.52150 -40.48998 -38.18013 -37.24510 -36.73634 -35.58824 -34.86352 -34.02323 -33.71729 -31.69845 -30.03975 -28.31027 -27.20815 -25.97032 -25.53904 -23.25468 -22.71937 -22.53223 -20.54474 -20.01034 -19.07325 -18.70646 -18.19348 -17.72596 -17.21307 -16.95250 -16.68995 -16.00050 -15.52100 -15.29838 -15.13103 -14.86200 -14.79970 -14.47821 -14.00895 -13.58085 -13.53579 -13.39378 -13.17106 -13.05601 -13.02451 -12.99053 -12.93802 -12.80194 -12.42738 -12.41503 -12.27802 -12.22075 -12.03495 -11.94633 -11.91122 -11.68507 -11.08938 -10.55455 -10.14019 -9.91342 -9.82617 -8.11417 -6.24389 -0.66944 -0.30738 -0.01233 0.18030 1.22025 1.38225 1.44591 1.46261 1.56852 2.22936 2.45220 2.47325 2.54256 2.92564 3.01812 3.17642 3.51959 3.84037 3.89643 4.02360 4.22326 4.27071 4.39518 4.53777 4.61304 4.66363 4.89507 4.89773 4.90807 5.02335 5.03049 5.07147 5.16061 5.26846 5.41540 5.61468 5.61923 5.77545 5.78856 6.05219 6.22583 6.55610 6.87183 7.03458 7.44092 8.94127 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011521 B = 0.005165 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.683746 B = 5419.918894 C = 6149.006313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.029 4.029 3 C -0.119 4.119 4 C -0.033 4.033 5 C -0.662 4.662 6 S 2.701 3.299 7 O -0.977 6.977 8 O -1.006 7.006 9 N -1.083 6.083 10 C 0.275 3.725 11 H 0.020 0.980 12 C -0.134 4.134 13 C -0.539 4.539 14 H 0.060 0.940 15 C 0.018 3.982 16 N -0.913 5.913 17 Si 0.961 3.039 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.272 1.272 21 C 0.072 3.928 22 C 0.177 3.823 23 N -0.280 5.280 24 N -0.047 5.047 25 N -0.196 5.196 26 H 0.497 0.503 27 N -0.268 5.268 28 C -0.105 4.105 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.172 0.828 33 H 0.146 0.854 34 H 0.417 0.583 35 H 0.070 0.930 36 H 0.029 0.971 37 H 0.025 0.975 38 H 0.265 0.735 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.808 -7.865 10.435 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.030 4.030 3 C -0.139 4.139 4 C -0.053 4.053 5 C -0.753 4.753 6 S 2.793 3.207 7 O -0.966 6.966 8 O -0.996 6.996 9 N -0.846 5.846 10 C 0.169 3.831 11 H 0.038 0.962 12 C -0.193 4.193 13 C -0.578 4.578 14 H 0.078 0.922 15 C -0.182 4.182 16 N -0.552 5.552 17 Si 0.786 3.214 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.197 1.197 21 C 0.067 3.933 22 C -0.103 4.103 23 N -0.153 5.153 24 N -0.042 5.042 25 N -0.047 5.047 26 H 0.356 0.644 27 N -0.121 5.121 28 C -0.126 4.126 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.189 0.811 33 H 0.164 0.836 34 H 0.254 0.746 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.859 -7.666 10.909 19.232 hybrid contribution 0.303 -0.816 -0.941 1.282 sum -13.556 -8.482 9.968 18.843 Atomic orbital electron populations 1.21025 0.86871 1.05175 1.04283 1.20586 0.98735 0.91665 0.91991 1.21717 0.92797 1.00098 0.99248 1.21157 0.96220 0.95994 0.91904 1.30773 1.26985 0.99197 1.18309 1.01173 0.74473 0.72203 0.72883 1.93502 1.81766 1.66024 1.55340 1.93493 1.81868 1.36956 1.87284 1.55290 1.70329 1.38322 1.20615 1.18265 0.93990 0.91042 0.79784 0.96194 1.21980 0.96708 0.98935 1.01688 1.21577 1.02176 1.36178 0.97886 0.92185 1.25655 0.98611 0.94547 0.99365 1.69978 1.28968 1.36819 1.19426 0.85516 0.79597 0.77773 0.78481 1.19863 1.20644 1.19687 1.16758 0.93436 0.84663 0.98402 1.23854 0.88815 0.93671 1.03971 1.76003 1.13770 1.08235 1.17290 1.78853 1.11496 0.99135 1.14755 1.47754 1.00384 1.13321 1.43263 0.64352 1.74707 1.17685 0.98717 1.21039 1.21403 0.90759 1.00503 0.99890 0.89124 0.89432 0.88871 0.81070 0.83643 0.74621 0.91105 0.95247 0.95564 0.92532 0.82136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 10.01 71.24 0.71 -0.56 16 2 C -0.03 -0.59 5.87 -19.90 -0.12 -0.71 16 3 C -0.12 -2.67 9.69 22.31 0.22 -2.46 16 4 C -0.03 -1.04 9.54 22.24 0.21 -0.82 16 5 C -0.66 -24.06 5.05 22.48 0.11 -23.95 16 6 S 2.70 118.08 4.88 -56.49 -0.28 117.81 16 7 O -0.98 -44.09 15.06 -128.00 -1.93 -46.02 16 8 O -1.01 -49.27 16.34 -128.00 -2.09 -51.36 16 9 N -1.08 -50.04 4.32 -172.52 -0.75 -50.79 16 10 C 0.27 14.27 2.90 44.25 0.13 14.40 16 11 H 0.02 1.15 7.51 -2.39 -0.02 1.14 16 12 C -0.13 -6.44 9.29 71.98 0.67 -5.77 16 13 C -0.54 -30.10 8.77 25.60 0.22 -29.88 16 14 H 0.06 3.32 7.81 -2.91 -0.02 3.29 16 15 C 0.02 1.00 5.30 84.66 0.45 1.45 16 16 N -0.91 -51.60 11.32 21.45 0.24 -51.36 16 17 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 C 0.07 2.33 5.34 -20.04 -0.11 2.22 16 22 C 0.18 5.90 7.58 137.38 1.04 6.94 16 23 N -0.28 -10.40 5.63 -52.18 -0.29 -10.70 16 24 N -0.05 -1.43 13.47 37.02 0.50 -0.93 16 25 N -0.20 -4.18 7.90 37.02 0.29 -3.89 16 26 H 0.50 4.64 8.96 -347.53 -3.12 1.52 16 27 N -0.27 -6.94 12.10 -52.13 -0.63 -7.58 16 28 C -0.10 -2.54 9.35 22.48 0.21 -2.33 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.72 8.08 -2.38 -0.02 0.70 16 31 H 0.09 0.69 8.08 -2.39 -0.02 0.67 16 32 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.15 4.50 7.34 -2.91 -0.02 4.48 16 34 H 0.42 18.69 7.33 -96.74 -0.71 17.98 16 35 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 36 H 0.03 1.25 6.70 -2.39 -0.02 1.23 16 37 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 39 H 0.16 3.04 7.90 -2.91 -0.02 3.02 16 Total: -1.00 -77.61 339.02 -1.84 -79.45 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -2.69 Total: 21.07 kcal Atomic # 6 Polarization: -45.20 SS G_CDS: 3.75 Total: -41.45 kcal Atomic # 7 Polarization: -124.60 SS G_CDS: -0.64 Total: -125.24 kcal Atomic # 8 Polarization: -93.36 SS G_CDS: -4.02 Total: -97.38 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 118.08 SS G_CDS: -0.28 Total: 117.81 kcal Total: -77.61 -1.84 -79.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592190570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.498 kcal (2) G-P(sol) polarization free energy of solvation -77.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds