Wall clock time and date at job start Tue Mar 31 2020 19:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38335 * 119.93969 * 2 1 4 4 C 1.38293 * 120.23741 * 180.02562 * 3 2 1 5 5 C 1.38050 * 120.11559 * 0.02562 * 4 3 2 6 6 C 1.39281 * 119.88191 * 0.02562 * 5 4 3 7 7 C 1.48467 * 120.11452 * 179.97438 * 6 5 4 8 8 N 1.34044 * 126.66896 * 187.42225 * 7 6 5 9 9 N 1.28992 * 107.26624 * 179.83363 * 8 7 6 10 10 N 1.28730 * 108.94114 * 0.42967 * 9 8 7 11 11 H 0.96998 * 125.34120 * 179.72207 * 10 9 8 12 12 N 1.28872 * 109.31910 * 359.73112 * 10 9 8 13 13 C 1.38012 * 119.94370 * 180.02562 * 2 1 3 14 14 S 1.76202 * 120.05601 * 0.24923 * 13 2 1 15 15 O 1.42096 * 106.40374 * 358.79230 * 14 13 2 16 16 O 1.42103 * 106.39900 * 131.71217 * 14 13 2 17 17 N 1.65601 * 107.21757 * 245.24912 * 14 13 2 18 18 C 1.46500 * 120.00008 * 64.99855 * 17 14 13 19 19 H 1.08998 * 109.46795 * 25.00749 * 18 17 14 20 20 C 1.52995 * 109.47400 * 265.00112 * 18 17 14 21 21 C 1.50705 * 109.46715 * 144.99785 * 18 17 14 22 22 H 1.07998 * 119.99668 * 34.45728 * 21 18 17 23 23 C 1.37881 * 119.99922 * 214.44848 * 21 18 17 24 24 N 1.31514 * 119.99750 * 184.04180 * 23 21 18 25 25 Si 1.86792 * 119.99839 * 4.04669 * 23 21 18 26 26 H 1.48503 * 109.47395 * 93.85967 * 25 23 21 27 27 H 1.48505 * 109.47250 * 213.85725 * 25 23 21 28 28 H 1.48500 * 109.47597 * 333.85715 * 25 23 21 29 29 H 1.08997 * 109.46477 * 257.85176 * 1 2 3 30 30 H 1.08998 * 109.47266 * 17.85281 * 1 2 3 31 31 H 1.09007 * 109.46840 * 137.85638 * 1 2 3 32 32 H 1.08004 * 119.88171 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.94217 * 180.02562 * 4 3 2 34 34 H 1.08000 * 120.05894 * 180.02562 * 5 4 3 35 35 H 0.96999 * 119.99947 * 245.00715 * 17 14 13 36 36 H 1.09000 * 109.47157 * 175.80524 * 20 18 17 37 37 H 1.09000 * 109.46921 * 295.80439 * 20 18 17 38 38 H 1.08995 * 109.46822 * 55.80874 * 20 18 17 39 39 H 0.97000 * 119.99502 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1987 0.0000 4 6 3.5804 1.2059 -0.0005 5 6 4.2792 0.0154 -0.0016 6 6 3.5891 -1.1944 -0.0027 7 6 4.3354 -2.4778 -0.0044 8 7 3.8162 -3.7056 -0.1445 9 7 4.7956 -4.5436 -0.0940 10 7 5.8931 -3.8936 0.0795 11 1 6.7747 -4.2910 0.1550 12 7 5.6368 -2.6319 0.1372 13 6 2.1959 -1.1959 -0.0005 14 16 1.3149 -2.7218 -0.0079 15 8 -0.0660 -2.3880 0.0165 16 8 1.9037 -3.5201 -1.0254 17 7 1.6380 -3.4812 1.4279 18 6 1.1878 -2.8863 2.6887 19 1 0.3266 -2.2452 2.5008 20 6 2.3207 -2.0547 3.2934 21 6 0.7994 -3.9802 3.6498 22 1 1.3373 -4.9167 3.6479 23 6 -0.2426 -3.7853 4.5315 24 7 -0.5306 -4.7080 5.4233 25 14 -1.2452 -2.2109 4.4591 26 1 -2.4421 -2.4250 3.6067 27 1 -1.6747 -1.8342 5.8299 28 1 -0.4158 -1.1219 3.8835 29 1 -0.3632 -0.2163 1.0047 30 1 -0.3634 0.9781 -0.3150 31 1 -0.3633 -0.7620 -0.6896 32 1 1.6545 2.1324 0.0004 33 1 4.1146 2.1446 -0.0001 34 1 5.3592 0.0221 -0.0016 35 1 2.1253 -4.3199 1.4340 36 1 1.9629 -1.5522 4.1921 37 1 3.1542 -2.7084 3.5501 38 1 2.6520 -1.3109 2.5688 39 1 -1.2638 -4.5710 6.0434 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592212659.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:27 Heat of formation + Delta-G solvation = 113.621605 kcal Electronic energy + Delta-G solvation = -28699.967410 eV Core-core repulsion = 24774.508633 eV Total energy + Delta-G solvation = -3925.458777 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.39239 -39.49279 -36.79522 -35.56907 -35.16110 -34.29542 -33.79922 -32.49298 -32.14671 -30.83098 -28.93563 -26.98256 -25.26461 -24.79493 -24.55921 -22.60404 -21.04643 -20.66977 -19.31881 -18.91740 -17.73342 -17.10526 -17.00056 -16.26012 -16.02845 -15.78379 -15.26430 -14.86438 -14.30564 -13.88127 -13.77910 -13.47258 -13.41995 -12.88730 -12.56208 -12.54178 -12.47164 -12.37026 -12.06073 -11.84627 -11.73889 -11.58360 -11.43880 -11.19816 -11.02450 -10.89930 -10.79091 -10.72183 -10.47126 -10.24517 -10.02403 -9.76181 -9.32433 -9.15849 -8.67223 -8.65143 -8.37045 -6.17195 -4.17509 0.42997 0.97410 1.17201 1.28500 2.25630 2.34323 3.27108 3.34405 3.38702 3.45934 3.59137 3.82344 4.14267 4.35473 4.38777 4.62412 4.81458 4.88009 5.16243 5.18407 5.25003 5.38261 5.43566 5.61500 5.67054 5.75055 5.99926 6.06045 6.12482 6.16484 6.26918 6.34100 6.40901 6.49201 6.56046 6.60511 6.77040 7.16243 7.18562 7.54120 8.10562 8.20119 8.43720 8.87210 9.43569 10.94999 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011936 B = 0.006286 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.283963 B = 4453.283359 C = 5448.766489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.021 3.979 3 C -0.129 4.129 4 C -0.070 4.070 5 C -0.114 4.114 6 C 0.092 3.908 7 C 0.184 3.816 8 N -0.219 5.219 9 N -0.040 5.040 10 N -0.231 5.231 11 H 0.474 0.526 12 N -0.284 5.284 13 C -0.644 4.644 14 S 2.674 3.326 15 O -0.964 6.964 16 O -0.942 6.942 17 N -1.082 6.082 18 C 0.235 3.765 19 H 0.051 0.949 20 C -0.156 4.156 21 C -0.511 4.511 22 H 0.081 0.919 23 C 0.077 3.923 24 N -0.889 5.889 25 Si 0.866 3.134 26 H -0.268 1.268 27 H -0.285 1.285 28 H -0.259 1.259 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.414 0.586 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.025 0.975 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.779 10.868 -10.815 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.020 3.980 3 C -0.149 4.149 4 C -0.089 4.089 5 C -0.134 4.134 6 C 0.087 3.913 7 C -0.095 4.095 8 N -0.094 5.094 9 N -0.037 5.037 10 N -0.076 5.076 11 H 0.328 0.672 12 N -0.136 5.136 13 C -0.729 4.729 14 S 2.761 3.239 15 O -0.954 6.954 16 O -0.929 6.929 17 N -0.844 5.844 18 C 0.130 3.870 19 H 0.069 0.931 20 C -0.216 4.216 21 C -0.551 4.551 22 H 0.099 0.901 23 C -0.127 4.127 24 N -0.526 5.526 25 Si 0.692 3.308 26 H -0.193 1.193 27 H -0.211 1.211 28 H -0.184 1.184 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.250 0.750 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.044 0.956 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.080 10.041 -11.401 18.803 hybrid contribution 0.873 1.283 0.555 1.648 sum 11.953 11.323 -10.846 19.716 Atomic orbital electron populations 1.21685 0.88924 1.04006 1.06347 1.19708 0.96861 0.91125 0.90346 1.21352 0.94393 0.97858 1.01260 1.21275 0.94292 0.97853 0.95435 1.21165 1.00467 0.90937 1.00880 1.16542 0.89853 0.87604 0.97256 1.23796 0.87540 0.94763 1.03447 1.76822 1.20256 0.97604 1.14743 1.79037 0.88525 1.22380 1.13731 1.47772 1.12277 1.02061 1.45508 0.67244 1.74759 1.17211 1.00242 1.21384 1.31245 1.04206 1.22105 1.15345 1.02591 0.74029 0.73096 0.74150 1.93540 1.31243 1.83862 1.86724 1.93615 1.77170 1.65774 1.56354 1.55667 1.72941 1.34536 1.21282 1.19014 0.92250 0.93994 0.81778 0.93121 1.22422 1.00507 0.98748 0.99936 1.21001 1.16883 1.01197 1.16013 0.90130 1.24982 0.96396 0.96468 0.94825 1.69887 1.29585 1.34062 1.19039 0.87004 0.81693 0.84392 0.77663 1.19312 1.21073 1.18385 0.89113 0.91593 0.86539 0.84828 0.84786 0.84477 0.75007 0.92676 0.93251 0.95629 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.36 36.01 0.30 -1.97 16 2 C 0.02 0.31 5.88 -104.67 -0.61 -0.30 16 3 C -0.13 -1.51 9.66 -39.53 -0.38 -1.89 16 4 C -0.07 -0.74 10.03 -39.63 -0.40 -1.14 16 5 C -0.11 -1.40 9.70 -39.26 -0.38 -1.78 16 6 C 0.09 1.43 5.40 -104.89 -0.57 0.87 16 7 C 0.18 2.99 7.69 -156.31 -1.20 1.78 16 8 N -0.22 -3.92 5.93 32.16 0.19 -3.73 16 9 N -0.04 -0.61 13.47 60.35 0.81 0.21 16 10 N -0.23 -2.56 7.90 60.35 0.48 -2.08 16 11 H 0.47 2.62 8.96 -340.37 -3.05 -0.43 16 12 N -0.28 -3.76 12.11 32.17 0.39 -3.37 16 13 C -0.64 -10.95 4.79 -39.27 -0.19 -11.14 16 14 S 2.67 53.19 4.86 -107.50 -0.52 52.67 16 15 O -0.96 -20.48 12.67 -57.17 -0.72 -21.21 16 16 O -0.94 -19.73 14.28 -57.17 -0.82 -20.54 16 17 N -1.08 -22.96 4.74 -5.88 -0.03 -22.98 16 18 C 0.23 5.45 2.50 -69.08 -0.17 5.28 16 19 H 0.05 1.21 4.52 -51.93 -0.23 0.98 16 20 C -0.16 -3.24 9.50 37.16 0.35 -2.89 16 21 C -0.51 -13.90 9.11 -34.44 -0.31 -14.21 16 22 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 23 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 24 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 25 Si 0.87 20.99 27.18 -169.99 -4.62 16.37 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.26 -5.83 6.45 56.52 0.36 -5.47 16 29 H 0.09 1.47 7.96 -51.93 -0.41 1.06 16 30 H 0.07 0.74 7.98 -51.93 -0.41 0.32 16 31 H 0.12 1.88 5.55 -51.98 -0.29 1.59 16 32 H 0.13 1.16 8.02 -52.48 -0.42 0.73 16 33 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.14 1.40 7.90 -52.49 -0.41 0.98 16 35 H 0.41 8.60 7.87 -34.47 -0.27 8.33 16 36 H 0.05 1.14 8.07 -51.93 -0.42 0.72 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.47 6.46 -51.93 -0.34 0.13 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 331.71 15.07 5.00 5.00 Total: -1.00 -34.58 331.71 -9.43 -44.02 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.70 Total: 6.53 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -3.66 Total: -25.31 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 2.62 Total: -57.53 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -1.54 Total: -41.75 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.62 Total: 16.37 kcal Atomic # 16 Polarization: 53.19 SS G_CDS: -0.52 Total: 52.67 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.58 -9.43 -44.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212659.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.640 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds