Wall clock time and date at job start Tue Mar 31 2020 19:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38339 * 119.93760 * 2 1 4 4 C 1.38299 * 120.23375 * 180.27989 * 3 2 1 5 5 C 1.38041 * 120.11862 * 359.97438 * 4 3 2 6 6 C 1.39287 * 119.88253 * 0.02562 * 5 4 3 7 7 C 1.48463 * 120.11804 * 179.97438 * 6 5 4 8 8 N 1.34048 * 126.67131 * 59.54025 * 7 6 5 9 9 N 1.28991 * 107.26586 * 179.83544 * 8 7 6 10 10 N 1.28725 * 108.93934 * 0.43472 * 9 8 7 11 11 H 0.97009 * 125.34025 * 179.74320 * 10 9 8 12 12 N 1.28869 * 109.32475 * 359.72278 * 10 9 8 13 13 C 1.38003 * 119.94322 * 180.28027 * 2 1 3 14 14 S 1.76204 * 120.05930 * 359.69852 * 13 2 1 15 15 O 1.42097 * 106.39899 * 194.80550 * 14 13 2 16 16 O 1.42098 * 106.40140 * 327.72332 * 14 13 2 17 17 N 1.65594 * 107.21889 * 81.26199 * 14 13 2 18 18 C 1.46502 * 119.99861 * 62.78829 * 17 14 13 19 19 H 1.09003 * 109.47206 * 335.80605 * 18 17 14 20 20 C 1.52999 * 109.47156 * 95.80352 * 18 17 14 21 21 C 1.50702 * 109.47337 * 215.80231 * 18 17 14 22 22 H 1.08002 * 119.99876 * 0.02562 * 21 18 17 23 23 C 1.37872 * 120.00086 * 179.97438 * 21 18 17 24 24 N 1.31511 * 120.00052 * 0.02562 * 23 21 18 25 25 Si 1.86799 * 120.00152 * 179.97438 * 23 21 18 26 26 H 1.48498 * 109.47087 * 89.99722 * 25 23 21 27 27 H 1.48494 * 109.47406 * 210.00389 * 25 23 21 28 28 H 1.48501 * 109.47113 * 330.00253 * 25 23 21 29 29 H 1.09002 * 109.46810 * 269.72138 * 1 2 3 30 30 H 1.08996 * 109.47228 * 29.72177 * 1 2 3 31 31 H 1.09002 * 109.46920 * 149.72342 * 1 2 3 32 32 H 1.07997 * 119.88464 * 0.28100 * 3 2 1 33 33 H 1.08000 * 119.93794 * 180.02562 * 4 3 2 34 34 H 1.08003 * 120.06239 * 180.02562 * 5 4 3 35 35 H 0.96999 * 120.00228 * 242.78549 * 17 14 13 36 36 H 1.08998 * 109.47709 * 180.02562 * 20 18 17 37 37 H 1.09002 * 109.47250 * 300.00141 * 20 18 17 38 38 H 1.09002 * 109.47427 * 59.99537 * 20 18 17 39 39 H 0.97002 * 120.00354 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5803 1.2060 -0.0058 5 6 4.2792 0.0155 -0.0112 6 6 3.5890 -1.1943 -0.0112 7 6 4.3353 -2.4777 -0.0175 8 7 5.2129 -2.8980 0.9046 9 7 5.6324 -4.0596 0.5323 10 7 5.0637 -4.3728 -0.5792 11 1 5.2105 -5.1951 -1.0724 12 7 4.2682 -3.4229 -0.9337 13 6 2.1958 -1.1958 -0.0058 14 16 1.3149 -2.7218 -0.0053 15 8 2.2573 -3.7289 0.3365 16 8 0.1195 -2.4948 0.7286 17 7 0.8546 -3.0227 -1.5673 18 6 1.8697 -3.2196 -2.6050 19 1 2.7964 -2.7309 -2.3042 20 6 2.1212 -4.7168 -2.7950 21 6 1.3851 -2.6232 -3.9014 22 1 0.4179 -2.1449 -3.9476 23 6 2.1770 -2.6872 -5.0282 24 7 3.3550 -3.2691 -4.9719 25 14 1.5761 -1.9486 -6.6353 26 1 2.0038 -0.5289 -6.7181 27 1 2.1525 -2.7066 -7.7747 28 1 0.0939 -2.0229 -6.6907 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 0.8924 -0.5095 31 1 -0.3633 -0.8875 -0.5181 32 1 1.6545 2.1324 0.0046 33 1 4.1145 2.1446 -0.0054 34 1 5.3592 0.0222 -0.0153 35 1 -0.0872 -3.0686 -1.7951 36 1 2.8768 -4.8633 -3.5668 37 1 2.4717 -5.1482 -1.8574 38 1 1.1945 -5.2056 -3.0958 39 1 3.9120 -3.3145 -5.7648 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592212660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:31 Heat of formation + Delta-G solvation = 91.054164 kcal Electronic energy + Delta-G solvation = -28823.305282 eV Core-core repulsion = 24896.867907 eV Total energy + Delta-G solvation = -3926.437375 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.83605 -39.31411 -36.93441 -35.44116 -35.33073 -33.98229 -33.22643 -32.51553 -32.16252 -30.48855 -28.26321 -26.95671 -25.20551 -24.52857 -23.89073 -22.49810 -21.01229 -20.84806 -19.06224 -18.60028 -17.57206 -17.03929 -16.57919 -16.23754 -15.90986 -15.62662 -15.04344 -14.55585 -14.42241 -13.81658 -13.68963 -13.42786 -13.28122 -12.67058 -12.45923 -12.30115 -12.17819 -12.09719 -11.84902 -11.67436 -11.61426 -11.41085 -11.34820 -11.14368 -11.01380 -10.73421 -10.59392 -10.53772 -10.42607 -10.22490 -10.11287 -9.79316 -9.18669 -9.11132 -8.62146 -8.56911 -8.27679 -6.12286 -4.18913 0.75835 1.05282 1.24390 1.77043 2.57623 2.82779 3.22195 3.29619 3.31776 3.45384 3.73683 3.99836 4.27170 4.34264 4.63211 4.84623 4.91540 5.05741 5.19843 5.24476 5.37575 5.45892 5.69713 5.77149 5.80495 5.87660 6.09318 6.20008 6.26391 6.33344 6.39928 6.44138 6.84621 6.86262 6.97745 7.05826 7.15826 7.62364 7.71083 7.89557 8.04677 8.30330 8.70527 8.83847 9.46145 10.92698 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010162 B = 0.006549 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.742247 B = 4274.312082 C = 5020.931212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.024 3.976 3 C -0.133 4.133 4 C -0.064 4.064 5 C -0.112 4.112 6 C 0.106 3.894 7 C 0.184 3.816 8 N -0.264 5.264 9 N -0.069 5.069 10 N -0.212 5.212 11 H 0.473 0.527 12 N -0.214 5.214 13 C -0.644 4.644 14 S 2.690 3.310 15 O -0.966 6.966 16 O -0.980 6.980 17 N -1.097 6.097 18 C 0.271 3.729 19 H 0.066 0.934 20 C -0.147 4.147 21 C -0.525 4.525 22 H 0.061 0.939 23 C 0.067 3.933 24 N -0.883 5.883 25 Si 0.894 3.106 26 H -0.281 1.281 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.407 0.593 36 H 0.090 0.910 37 H 0.019 0.981 38 H 0.025 0.975 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 5.362 7.482 9.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.022 3.978 3 C -0.152 4.152 4 C -0.082 4.082 5 C -0.132 4.132 6 C 0.101 3.899 7 C -0.098 4.098 8 N -0.138 5.138 9 N -0.063 5.063 10 N -0.058 5.058 11 H 0.327 0.673 12 N -0.066 5.066 13 C -0.731 4.731 14 S 2.778 3.222 15 O -0.955 6.955 16 O -0.970 6.970 17 N -0.859 5.859 18 C 0.167 3.833 19 H 0.084 0.916 20 C -0.206 4.206 21 C -0.565 4.565 22 H 0.079 0.921 23 C -0.136 4.136 24 N -0.521 5.521 25 Si 0.722 3.278 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.241 0.759 36 H 0.108 0.892 37 H 0.038 0.962 38 H 0.044 0.956 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.263 4.365 8.391 9.542 hybrid contribution -0.550 0.801 -1.950 2.178 sum 0.713 5.166 6.441 8.287 Atomic orbital electron populations 1.21219 0.89656 1.03988 1.04256 1.19484 0.96207 0.91369 0.90710 1.21230 0.94409 0.97667 1.01889 1.21269 0.94275 0.97851 0.94817 1.21154 1.00393 0.90965 1.00717 1.16593 0.89638 0.88247 0.95392 1.23278 0.99448 0.96021 0.91020 1.75901 1.11474 1.03360 1.23050 1.78679 1.18345 1.09312 0.99977 1.47571 1.25433 1.17385 1.15370 0.67325 1.75288 1.10595 0.96885 1.23785 1.30932 1.04254 1.21205 1.16708 1.01859 0.73143 0.73807 0.73369 1.93537 1.63917 1.55077 1.82944 1.93536 1.45846 1.86425 1.71185 1.55576 1.16828 1.86830 1.26684 1.18752 0.85992 0.93710 0.84851 0.91606 1.22122 1.00950 0.97670 0.99899 1.21334 1.03834 1.37304 0.93985 0.92050 1.24852 0.94878 0.95191 0.98701 1.69881 1.09820 1.43047 1.29344 0.86568 0.79030 0.79134 0.83075 1.20714 1.21208 1.19890 0.88998 0.90484 0.90342 0.84883 0.84753 0.84765 0.75935 0.89199 0.96193 0.95619 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.47 36.00 0.31 -1.56 16 2 C 0.02 0.37 5.87 -104.67 -0.61 -0.24 16 3 C -0.13 -1.71 9.69 -39.52 -0.38 -2.09 16 4 C -0.06 -0.79 10.03 -39.63 -0.40 -1.19 16 5 C -0.11 -1.67 9.78 -39.26 -0.38 -2.06 16 6 C 0.11 1.93 5.75 -104.89 -0.60 1.33 16 7 C 0.18 3.59 5.49 -156.31 -0.86 2.73 16 8 N -0.26 -5.02 12.54 32.15 0.40 -4.62 16 9 N -0.07 -1.20 13.47 60.35 0.81 -0.39 16 10 N -0.21 -3.55 7.90 60.35 0.48 -3.07 16 11 H 0.47 6.01 8.96 -340.36 -3.05 2.96 16 12 N -0.21 -4.24 6.90 32.17 0.22 -4.02 16 13 C -0.64 -11.75 5.68 -39.27 -0.22 -11.98 16 14 S 2.69 52.43 4.81 -107.50 -0.52 51.91 16 15 O -0.97 -20.61 12.96 -57.17 -0.74 -21.35 16 16 O -0.98 -19.21 14.99 -57.17 -0.86 -20.07 16 17 N -1.10 -22.00 5.31 -5.88 -0.03 -22.03 16 18 C 0.27 6.25 2.39 -69.08 -0.17 6.08 16 19 H 0.07 1.60 5.14 -51.93 -0.27 1.33 16 20 C -0.15 -3.34 8.88 37.16 0.33 -3.01 16 21 C -0.52 -13.19 8.76 -34.44 -0.30 -13.49 16 22 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 23 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 24 N -0.88 -23.05 11.32 55.43 0.63 -22.42 16 25 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 29 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.08 1.19 5.80 -51.93 -0.30 0.89 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 35 H 0.41 7.39 8.84 -34.47 -0.30 7.08 16 36 H 0.09 2.18 6.07 -51.93 -0.32 1.87 16 37 H 0.02 0.41 7.40 -51.93 -0.38 0.03 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.26 6.56 8.31 -40.82 -0.34 6.23 16 LS Contribution 333.94 15.07 5.03 5.03 Total: -1.00 -32.10 333.94 -9.68 -41.78 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.70 Total: 8.11 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -3.39 Total: -23.87 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 2.51 Total: -56.55 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -1.60 Total: -41.42 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 52.43 SS G_CDS: -0.52 Total: 51.91 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.10 -9.68 -41.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.831 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds