Wall clock time and date at job start Tue Mar 31 2020 19:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38339 * 119.93760 * 2 1 4 4 C 1.38299 * 120.23375 * 180.27989 * 3 2 1 5 5 C 1.38041 * 120.11862 * 359.97438 * 4 3 2 6 6 C 1.39287 * 119.88253 * 0.02562 * 5 4 3 7 7 C 1.48463 * 120.11804 * 179.97438 * 6 5 4 8 8 N 1.34048 * 126.67131 * 59.54025 * 7 6 5 9 9 N 1.28991 * 107.26586 * 179.83544 * 8 7 6 10 10 N 1.28725 * 108.93934 * 0.43472 * 9 8 7 11 11 H 0.97009 * 125.34025 * 179.74320 * 10 9 8 12 12 N 1.28869 * 109.32475 * 359.72278 * 10 9 8 13 13 C 1.38003 * 119.94322 * 180.28027 * 2 1 3 14 14 S 1.76204 * 120.05930 * 359.69852 * 13 2 1 15 15 O 1.42097 * 106.39899 * 194.80550 * 14 13 2 16 16 O 1.42098 * 106.40140 * 327.72332 * 14 13 2 17 17 N 1.65594 * 107.21889 * 81.26199 * 14 13 2 18 18 C 1.46502 * 119.99861 * 62.78829 * 17 14 13 19 19 H 1.09003 * 109.47206 * 335.80605 * 18 17 14 20 20 C 1.52999 * 109.47156 * 95.80352 * 18 17 14 21 21 C 1.50702 * 109.47337 * 215.80231 * 18 17 14 22 22 H 1.08002 * 119.99876 * 0.02562 * 21 18 17 23 23 C 1.37872 * 120.00086 * 179.97438 * 21 18 17 24 24 N 1.31511 * 120.00052 * 0.02562 * 23 21 18 25 25 Si 1.86799 * 120.00152 * 179.97438 * 23 21 18 26 26 H 1.48498 * 109.47087 * 89.99722 * 25 23 21 27 27 H 1.48494 * 109.47406 * 210.00389 * 25 23 21 28 28 H 1.48501 * 109.47113 * 330.00253 * 25 23 21 29 29 H 1.09002 * 109.46810 * 269.72138 * 1 2 3 30 30 H 1.08996 * 109.47228 * 29.72177 * 1 2 3 31 31 H 1.09002 * 109.46920 * 149.72342 * 1 2 3 32 32 H 1.07997 * 119.88464 * 0.28100 * 3 2 1 33 33 H 1.08000 * 119.93794 * 180.02562 * 4 3 2 34 34 H 1.08003 * 120.06239 * 180.02562 * 5 4 3 35 35 H 0.96999 * 120.00228 * 242.78549 * 17 14 13 36 36 H 1.08998 * 109.47709 * 180.02562 * 20 18 17 37 37 H 1.09002 * 109.47250 * 300.00141 * 20 18 17 38 38 H 1.09002 * 109.47427 * 59.99537 * 20 18 17 39 39 H 0.97002 * 120.00354 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5803 1.2060 -0.0058 5 6 4.2792 0.0155 -0.0112 6 6 3.5890 -1.1943 -0.0112 7 6 4.3353 -2.4777 -0.0175 8 7 5.2129 -2.8980 0.9046 9 7 5.6324 -4.0596 0.5323 10 7 5.0637 -4.3728 -0.5792 11 1 5.2105 -5.1951 -1.0724 12 7 4.2682 -3.4229 -0.9337 13 6 2.1958 -1.1958 -0.0058 14 16 1.3149 -2.7218 -0.0053 15 8 2.2573 -3.7289 0.3365 16 8 0.1195 -2.4948 0.7286 17 7 0.8546 -3.0227 -1.5673 18 6 1.8697 -3.2196 -2.6050 19 1 2.7964 -2.7309 -2.3042 20 6 2.1212 -4.7168 -2.7950 21 6 1.3851 -2.6232 -3.9014 22 1 0.4179 -2.1449 -3.9476 23 6 2.1770 -2.6872 -5.0282 24 7 3.3550 -3.2691 -4.9719 25 14 1.5761 -1.9486 -6.6353 26 1 2.0038 -0.5289 -6.7181 27 1 2.1525 -2.7066 -7.7747 28 1 0.0939 -2.0229 -6.6907 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 0.8924 -0.5095 31 1 -0.3633 -0.8875 -0.5181 32 1 1.6545 2.1324 0.0046 33 1 4.1145 2.1446 -0.0054 34 1 5.3592 0.0222 -0.0153 35 1 -0.0872 -3.0686 -1.7951 36 1 2.8768 -4.8633 -3.5668 37 1 2.4717 -5.1482 -1.8574 38 1 1.1945 -5.2056 -3.0958 39 1 3.9120 -3.3145 -5.7648 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592212660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:31 Heat of formation + Delta-G solvation = 67.375556 kcal Electronic energy + Delta-G solvation = -28824.332063 eV Core-core repulsion = 24896.867907 eV Total energy + Delta-G solvation = -3927.464156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.23376 -40.43232 -38.46682 -37.17626 -36.90115 -35.32205 -34.57651 -34.05681 -33.60755 -31.72769 -30.04268 -28.05101 -27.13541 -25.80519 -25.27347 -23.68166 -22.72963 -22.18091 -20.53232 -19.97659 -19.15641 -18.44965 -17.95565 -17.89412 -17.19764 -17.06907 -16.69303 -15.94191 -15.68060 -15.30063 -15.10234 -14.74416 -14.51167 -14.30241 -14.01507 -13.60779 -13.47628 -13.44402 -13.36690 -13.23518 -13.09688 -12.92453 -12.80342 -12.70586 -12.45109 -12.34622 -12.17297 -12.14106 -11.96642 -11.85638 -11.74961 -11.16473 -10.92235 -10.49067 -10.32189 -10.02025 -9.74000 -8.04644 -6.16543 -0.55258 -0.29620 0.11430 0.37499 1.18365 1.45560 1.48500 1.55998 1.57743 2.13257 2.41125 2.50652 2.71832 2.81124 3.24850 3.36314 3.55715 3.78007 3.96584 4.17024 4.26959 4.31556 4.49873 4.63412 4.69828 4.72177 4.79336 4.83900 5.02416 5.09519 5.21669 5.25402 5.28216 5.30698 5.33791 5.67164 5.71706 5.82688 5.93516 6.14587 6.20629 6.49847 6.92626 7.29691 7.50679 8.99234 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010162 B = 0.006549 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.742247 B = 4274.312082 C = 5020.931212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.010 3.990 3 C -0.125 4.125 4 C -0.049 4.049 5 C -0.119 4.119 6 C 0.071 3.929 7 C 0.180 3.820 8 N -0.280 5.280 9 N -0.064 5.064 10 N -0.200 5.200 11 H 0.486 0.514 12 N -0.243 5.243 13 C -0.667 4.667 14 S 2.697 3.303 15 O -0.991 6.991 16 O -0.987 6.987 17 N -1.099 6.099 18 C 0.276 3.724 19 H 0.057 0.943 20 C -0.137 4.137 21 C -0.539 4.539 22 H 0.062 0.938 23 C 0.024 3.976 24 N -0.903 5.903 25 Si 0.950 3.050 26 H -0.278 1.278 27 H -0.287 1.287 28 H -0.270 1.270 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.177 0.823 33 H 0.182 0.818 34 H 0.148 0.852 35 H 0.413 0.587 36 H 0.073 0.927 37 H 0.026 0.974 38 H 0.022 0.978 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.315 8.081 7.356 10.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.009 3.991 3 C -0.143 4.143 4 C -0.067 4.067 5 C -0.140 4.140 6 C 0.066 3.934 7 C -0.101 4.101 8 N -0.153 5.153 9 N -0.058 5.058 10 N -0.049 5.049 11 H 0.342 0.658 12 N -0.095 5.095 13 C -0.757 4.757 14 S 2.789 3.211 15 O -0.980 6.980 16 O -0.978 6.978 17 N -0.860 5.860 18 C 0.171 3.829 19 H 0.075 0.925 20 C -0.197 4.197 21 C -0.578 4.578 22 H 0.080 0.920 23 C -0.176 4.176 24 N -0.542 5.542 25 Si 0.776 3.224 26 H -0.204 1.204 27 H -0.213 1.213 28 H -0.195 1.195 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.077 0.923 32 H 0.194 0.806 33 H 0.199 0.801 34 H 0.166 0.834 35 H 0.247 0.753 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.924 7.034 8.266 10.893 hybrid contribution -0.434 0.024 -1.848 1.898 sum 0.490 7.058 6.418 9.552 Atomic orbital electron populations 1.21327 0.88826 1.04676 1.04855 1.19870 0.97099 0.91594 0.90566 1.21767 0.94879 0.98148 0.99531 1.21845 0.94379 0.98606 0.91846 1.21503 1.01354 0.90851 1.00247 1.16887 0.89875 0.88809 0.97814 1.23656 0.99286 0.96548 0.90631 1.75868 1.12154 1.03852 1.23454 1.78600 1.18137 1.09052 1.00025 1.47600 1.24648 1.17523 1.15146 0.65781 1.75230 1.11724 0.97747 1.24772 1.30589 1.04369 1.20954 1.19787 1.01346 0.72804 0.74139 0.72783 1.93495 1.64355 1.56980 1.83188 1.93519 1.46374 1.86770 1.71094 1.55414 1.16704 1.87459 1.26414 1.18503 0.86257 0.93275 0.84832 0.92534 1.21995 1.00178 0.97950 0.99592 1.21636 1.03904 1.37320 0.94978 0.91973 1.25508 0.95096 0.95691 1.01352 1.69992 1.10536 1.43780 1.29886 0.85694 0.78649 0.78345 0.79713 1.20416 1.21311 1.19452 0.88377 0.87199 0.92309 0.80574 0.80057 0.83430 0.75290 0.90852 0.95540 0.95915 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.47 71.24 0.60 -3.00 16 2 C 0.01 0.30 5.87 -19.90 -0.12 0.18 16 3 C -0.12 -2.67 9.69 22.31 0.22 -2.45 16 4 C -0.05 -1.01 10.03 22.24 0.22 -0.78 16 5 C -0.12 -3.32 9.78 22.48 0.22 -3.10 16 6 C 0.07 2.55 5.75 -20.04 -0.12 2.44 16 7 C 0.18 7.13 5.49 137.38 0.75 7.88 16 8 N -0.28 -10.76 12.54 -52.18 -0.65 -11.41 16 9 N -0.06 -2.25 13.47 37.02 0.50 -1.75 16 10 N -0.20 -6.86 7.90 37.02 0.29 -6.57 16 11 H 0.49 12.75 8.96 -347.53 -3.12 9.63 16 12 N -0.24 -9.83 6.90 -52.13 -0.36 -10.19 16 13 C -0.67 -24.01 5.68 22.47 0.13 -23.88 16 14 S 2.70 106.65 4.81 -56.49 -0.27 106.38 16 15 O -0.99 -43.43 12.96 -128.00 -1.66 -45.09 16 16 O -0.99 -39.05 14.99 -128.00 -1.92 -40.97 16 17 N -1.10 -44.72 5.31 -172.51 -0.92 -45.64 16 18 C 0.28 12.92 2.39 44.25 0.11 13.02 16 19 H 0.06 2.81 5.14 -2.39 -0.01 2.79 16 20 C -0.14 -6.39 8.88 71.98 0.64 -5.75 16 21 C -0.54 -27.08 8.76 25.60 0.22 -26.85 16 22 H 0.06 3.03 7.81 -2.91 -0.02 3.01 16 23 C 0.02 1.23 5.30 84.65 0.45 1.68 16 24 N -0.90 -47.45 11.32 21.44 0.24 -47.21 16 25 Si 0.95 40.62 29.54 68.60 2.03 42.65 16 26 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 H 0.10 2.36 8.07 -2.39 -0.02 2.34 16 30 H 0.11 2.02 8.08 -2.39 -0.02 2.00 16 31 H 0.06 1.74 5.80 -2.39 -0.01 1.72 16 32 H 0.18 2.22 8.06 -2.91 -0.02 2.19 16 33 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 35 H 0.41 15.25 8.84 -96.75 -0.85 14.40 16 36 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 37 H 0.03 1.14 7.40 -2.39 -0.02 1.13 16 38 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.26 13.16 8.31 -92.71 -0.77 12.39 16 Total: -1.00 -69.54 333.94 -2.22 -71.76 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -2.83 Total: 28.65 kcal Atomic # 6 Polarization: -43.94 SS G_CDS: 3.33 Total: -40.61 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -0.90 Total: -122.78 kcal Atomic # 8 Polarization: -82.47 SS G_CDS: -3.58 Total: -86.05 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: 106.65 SS G_CDS: -0.27 Total: 106.38 kcal Total: -69.54 -2.22 -71.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.131 kcal (2) G-P(sol) polarization free energy of solvation -69.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds