Wall clock time and date at job start Tue Mar 31 2020 20:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34228 * 116.99845 * 2 1 4 4 O 1.20819 * 120.00168 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99957 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47156 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.47416 * 179.97438 * 6 5 3 8 8 C 1.36490 * 120.00168 * 266.62675 * 7 6 5 9 9 H 1.07993 * 120.00028 * 140.60726 * 8 7 6 10 10 C 1.39289 * 119.99616 * 320.60715 * 8 7 6 11 11 N 1.31218 * 119.99607 * 159.60570 * 10 8 7 12 12 Si 1.86796 * 120.00036 * 339.60544 * 10 8 7 13 13 H 1.48500 * 109.47168 * 91.24002 * 12 10 8 14 14 H 1.48505 * 109.47090 * 211.23449 * 12 10 8 15 15 H 1.48492 * 109.47513 * 331.23724 * 12 10 8 16 16 C 1.34776 * 120.00249 * 86.62008 * 7 6 5 17 17 O 1.21795 * 119.99387 * 354.51841 * 16 7 6 18 18 C 1.41828 * 120.00471 * 174.52490 * 16 7 6 19 19 C 1.35488 * 120.00246 * 188.15861 * 18 16 7 20 20 C 1.46175 * 120.00054 * 29.00464 * 19 18 16 21 21 C 1.38239 * 125.82615 * 185.69737 * 20 19 18 22 22 C 1.39671 * 106.86685 * 179.73993 * 21 20 19 23 23 C 1.37898 * 106.90228 * 0.41072 * 22 21 20 24 24 C 1.46720 * 125.77674 * 179.84170 * 23 22 21 25 25 O 1.21599 * 119.99893 * 359.72306 * 24 23 22 26 26 O 1.34891 * 120.00173 * 179.71628 * 24 23 22 27 27 O 1.34593 * 125.81813 * 5.69416 * 20 19 18 28 28 H 1.09006 * 109.47226 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47602 * 299.99711 * 1 2 3 30 30 H 1.09006 * 109.47332 * 60.00190 * 1 2 3 31 31 H 1.09001 * 109.47146 * 59.99736 * 5 3 2 32 32 H 1.09003 * 109.46947 * 299.99906 * 5 3 2 33 33 H 1.09001 * 109.47318 * 59.99829 * 6 5 3 34 34 H 1.08994 * 109.47280 * 299.99668 * 6 5 3 35 35 H 0.97002 * 119.99610 * 180.02562 * 11 10 8 36 36 H 1.08003 * 120.00085 * 8.15989 * 18 16 7 37 37 H 1.08000 * 120.00443 * 208.99700 * 19 18 16 38 38 H 1.08003 * 126.56906 * 359.97438 * 21 20 19 39 39 H 1.07991 * 126.55194 * 180.25720 * 22 21 20 40 40 H 0.96706 * 116.99904 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7421 0.0002 7 7 5.4630 2.8188 0.0002 8 6 6.1409 2.9234 1.1803 9 1 7.0663 2.3849 1.3209 10 6 5.6390 3.7249 2.2030 11 7 6.0334 3.5336 3.4398 12 14 4.4048 5.0719 1.8138 13 1 3.0271 4.5308 1.9346 14 1 4.5807 6.1954 2.7688 15 1 4.6251 5.5602 0.4289 16 6 6.1396 2.7860 -1.1649 17 8 5.5441 2.5925 -2.2096 18 6 7.5450 2.9768 -1.1746 19 6 8.2027 3.1091 -2.3517 20 6 7.5186 3.6789 -3.5111 21 6 8.0329 3.7674 -4.7912 22 6 7.0509 4.3686 -5.5817 23 6 5.9785 4.6337 -4.7564 24 6 4.7193 5.2676 -5.1629 25 8 4.5576 5.6132 -6.3175 26 8 3.7409 5.4669 -4.2560 27 8 6.2805 4.2068 -3.5142 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9557 0.7809 -0.8908 32 1 3.9563 0.7806 0.8892 33 1 3.6107 3.2356 0.8906 34 1 3.6100 3.2367 -0.8893 35 1 5.6836 4.0915 4.1521 36 1 8.0910 3.0165 -0.2435 37 1 9.2324 2.7938 -2.4335 38 1 9.0060 3.4320 -5.1183 39 1 7.1194 4.5868 -6.6372 40 1 2.9292 5.8878 -4.5711 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598855862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:43 Heat of formation + Delta-G solvation = -168.605446 kcal Electronic energy + Delta-G solvation = -29595.189354 eV Core-core repulsion = 25150.153920 eV Total energy + Delta-G solvation = -4445.035434 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.47981 -41.69601 -41.06712 -40.72269 -37.80333 -37.33538 -37.06070 -34.82118 -34.21756 -33.88992 -32.71766 -30.44649 -28.82319 -27.07545 -26.56919 -25.29104 -23.22038 -22.65891 -21.98166 -21.56574 -20.47551 -19.56062 -19.09054 -18.85278 -18.26218 -18.19000 -17.83555 -17.64475 -17.47671 -16.89583 -16.32941 -16.15558 -15.90067 -15.34169 -15.12970 -14.86904 -14.73243 -14.46836 -14.37005 -14.11651 -13.99526 -13.94278 -13.78983 -13.53882 -13.11849 -13.07048 -12.87593 -12.81464 -12.70247 -12.18069 -12.08778 -11.91036 -11.80345 -11.69601 -11.19211 -11.13499 -10.82637 -10.53454 -9.79476 -8.96431 -8.57965 -6.14484 -0.75367 0.32897 1.03092 1.16107 1.27447 1.37564 1.50856 1.57725 1.62715 1.82417 2.12366 2.30677 2.45475 2.78286 3.00830 3.64786 3.69718 3.85323 3.89918 4.06171 4.12189 4.26057 4.26986 4.33274 4.40325 4.54785 4.62867 4.63962 4.64924 4.73485 4.83350 4.95503 5.09113 5.22949 5.24958 5.28528 5.37757 5.54720 6.02437 6.07860 6.20968 6.59281 6.78725 6.92143 7.38881 7.78082 8.54774 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.009050 B = 0.004691 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.013202 B = 5966.916314 C = 7352.681311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.473 3.527 4 O -0.540 6.540 5 C -0.113 4.113 6 C 0.113 3.887 7 N -0.462 5.462 8 C -0.338 4.338 9 H 0.106 0.894 10 C 0.047 3.953 11 N -0.879 5.879 12 Si 0.902 3.098 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.275 1.275 16 C 0.491 3.509 17 O -0.594 6.594 18 C -0.173 4.173 19 C -0.025 4.025 20 C 0.048 3.952 21 C -0.190 4.190 22 C -0.100 4.100 23 C -0.116 4.116 24 C 0.574 3.426 25 O -0.522 6.522 26 O -0.509 6.509 27 O -0.133 6.133 28 H 0.138 0.862 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.281 0.719 36 H 0.160 0.840 37 H 0.216 0.784 38 H 0.207 0.793 39 H 0.185 0.815 40 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.924 -3.484 -10.548 11.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.317 3.683 4 O -0.430 6.430 5 C -0.151 4.151 6 C -0.010 4.010 7 N -0.182 5.182 8 C -0.466 4.466 9 H 0.123 0.877 10 C -0.159 4.159 11 N -0.515 5.515 12 Si 0.730 3.270 13 H -0.200 1.200 14 H -0.205 1.205 15 H -0.200 1.200 16 C 0.286 3.714 17 O -0.481 6.481 18 C -0.193 4.193 19 C -0.045 4.045 20 C -0.006 4.006 21 C -0.208 4.208 22 C -0.120 4.120 23 C -0.168 4.168 24 C 0.421 3.579 25 O -0.415 6.415 26 O -0.323 6.323 27 O -0.027 6.027 28 H 0.156 0.844 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.178 0.822 37 H 0.232 0.768 38 H 0.224 0.776 39 H 0.203 0.797 40 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 0.441 -3.298 -10.698 11.203 hybrid contribution -1.804 1.229 0.225 2.194 sum -1.363 -2.068 -10.473 10.762 Atomic orbital electron populations 1.23609 0.74602 1.05993 1.02523 1.86508 1.25287 1.32171 1.83671 1.23837 0.92115 0.81386 0.70952 1.90631 1.67908 1.37464 1.47044 1.21613 0.86920 0.99633 1.06972 1.21357 0.83251 0.95117 1.01307 1.43642 1.03934 1.64331 1.06288 1.19021 1.09715 1.28394 0.89454 0.87668 1.25687 0.97884 0.97540 0.94820 1.69669 1.43965 1.38128 0.99705 0.86561 0.80391 0.81449 0.78589 1.19965 1.20526 1.20044 1.17836 0.89767 0.81098 0.82741 1.90744 1.71230 1.54371 1.31784 1.22664 0.94092 1.02029 1.00546 1.22245 1.00868 0.94788 0.86572 1.22218 0.82271 0.98549 0.97534 1.22609 1.03110 1.05349 0.89724 1.22385 0.90418 0.97763 1.01402 1.21445 0.96887 1.13112 0.85333 1.19072 0.81999 0.74512 0.82360 1.90916 1.80678 1.50350 1.19524 1.84765 1.28976 1.75063 1.43480 1.84554 1.30765 1.57690 1.29661 0.84354 0.92037 0.91986 0.86744 0.86069 0.91856 0.92261 0.90864 0.82240 0.76785 0.77578 0.79736 0.70401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.55 113.37 1.20 1.76 16 2 O -0.36 -11.00 10.56 -51.40 -0.54 -11.54 16 3 C 0.47 17.54 7.96 71.24 0.57 18.11 16 4 O -0.54 -22.97 15.73 21.98 0.35 -22.62 16 5 C -0.11 -4.31 6.12 29.85 0.18 -4.13 16 6 C 0.11 5.17 3.28 86.38 0.28 5.46 16 7 N -0.46 -21.34 2.14 -645.44 -1.38 -22.72 16 8 C -0.34 -16.39 8.74 84.22 0.74 -15.65 16 9 H 0.11 5.12 7.11 -2.91 -0.02 5.10 16 10 C 0.05 2.40 5.31 85.04 0.45 2.85 16 11 N -0.88 -46.13 13.95 21.72 0.30 -45.82 16 12 Si 0.90 43.02 25.16 68.60 1.73 44.75 16 13 H -0.27 -13.17 6.52 99.48 0.65 -12.52 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 15 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 16 C 0.49 21.52 6.90 85.13 0.59 22.11 16 17 O -0.59 -28.00 12.67 19.00 0.24 -27.76 16 18 C -0.17 -6.03 9.12 22.52 0.21 -5.83 16 19 C -0.02 -0.66 9.99 23.70 0.24 -0.43 16 20 C 0.05 1.48 6.25 24.33 0.15 1.64 16 21 C -0.19 -4.36 10.88 22.62 0.25 -4.11 16 22 C -0.10 -2.64 10.63 22.54 0.24 -2.40 16 23 C -0.12 -4.04 7.21 24.41 0.18 -3.86 16 24 C 0.57 19.42 8.31 70.04 0.58 20.00 16 25 O -0.52 -17.80 17.65 19.51 0.34 -17.46 16 26 O -0.51 -16.24 13.45 -56.60 -0.76 -17.00 16 27 O -0.13 -5.28 7.31 15.09 0.11 -5.17 16 28 H 0.14 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.06 1.37 8.13 -2.39 -0.02 1.36 16 30 H 0.06 1.37 8.13 -2.38 -0.02 1.35 16 31 H 0.11 4.21 8.14 -2.39 -0.02 4.19 16 32 H 0.12 4.41 8.14 -2.39 -0.02 4.40 16 33 H 0.06 3.07 3.38 -2.39 -0.01 3.06 16 34 H 0.06 2.89 7.57 -2.39 -0.02 2.87 16 35 H 0.28 13.95 8.30 -92.71 -0.77 13.18 16 36 H 0.16 5.26 6.50 -2.91 -0.02 5.24 16 37 H 0.22 3.11 8.06 -2.91 -0.02 3.08 16 38 H 0.21 2.66 8.06 -2.91 -0.02 2.63 16 39 H 0.19 3.78 8.06 -2.92 -0.02 3.76 16 40 H 0.43 8.50 9.11 -74.05 -0.67 7.83 16 Total: -1.00 -74.23 357.46 6.61 -67.62 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.38 Total: 22.22 kcal Atomic # 6 Polarization: 29.67 SS G_CDS: 5.84 Total: 35.51 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: -1.08 Total: -68.54 kcal Atomic # 8 Polarization: -101.29 SS G_CDS: -0.26 Total: -101.55 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.73 Total: 44.75 kcal Total: -74.23 6.61 -67.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598855862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.983 kcal (2) G-P(sol) polarization free energy of solvation -74.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds