Wall clock time and date at job start Tue Mar 31 2020 20:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34894 * 117.00000 * 2 1 4 4 O 1.21597 * 119.99972 * 0.02562 * 3 2 1 5 5 C 1.46713 * 119.99998 * 180.02562 * 3 2 1 6 6 C 1.37902 * 125.77733 * 180.02562 * 5 3 2 7 7 C 1.39667 * 106.91003 * 179.74288 * 6 5 3 8 8 C 1.38256 * 106.85870 * 0.41077 * 7 6 5 9 9 C 1.46177 * 125.82037 * 179.84968 * 8 7 6 10 10 C 1.35485 * 119.99821 * 174.96670 * 9 8 7 11 11 C 1.41835 * 119.99743 * 185.08919 * 10 9 8 12 12 O 1.21792 * 120.00550 * 5.14484 * 11 10 9 13 13 N 1.34783 * 119.99768 * 185.15178 * 11 10 9 14 14 C 1.36480 * 120.00137 * 355.65213 * 13 11 10 15 15 H 1.08005 * 120.00072 * 314.96067 * 14 13 11 16 16 C 1.39289 * 120.00253 * 134.96141 * 14 13 11 17 17 N 1.31214 * 119.99545 * 2.18590 * 16 14 13 18 18 Si 1.86791 * 120.00229 * 182.19265 * 16 14 13 19 19 H 1.48507 * 109.47317 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47668 * 119.99801 * 18 16 14 21 21 H 1.48507 * 109.47211 * 239.99862 * 18 16 14 22 22 C 1.46497 * 119.99872 * 175.65519 * 13 11 10 23 23 C 1.53009 * 109.47359 * 89.99956 * 22 13 11 24 24 C 1.50696 * 109.47221 * 180.02562 * 23 22 13 25 25 O 1.20827 * 120.00250 * 359.97438 * 24 23 22 26 26 O 1.34229 * 119.99818 * 179.97438 * 24 23 22 27 27 O 1.34588 * 108.35307 * 359.58264 * 8 7 6 28 28 H 1.09001 * 109.46883 * 299.99559 * 1 2 3 29 29 H 1.09001 * 109.47482 * 59.99710 * 1 2 3 30 30 H 1.09001 * 109.47415 * 179.97438 * 1 2 3 31 31 H 1.08000 * 126.54607 * 0.03857 * 6 5 3 32 32 H 1.07998 * 126.57277 * 180.29689 * 7 6 5 33 33 H 1.08002 * 120.00018 * 354.96124 * 9 8 7 34 34 H 1.07994 * 120.00340 * 5.08084 * 10 9 8 35 35 H 0.97005 * 119.99874 * 185.00753 * 17 16 14 36 36 H 1.09001 * 109.47065 * 209.99585 * 22 13 11 37 37 H 1.09003 * 109.47148 * 329.99612 * 22 13 11 38 38 H 1.09001 * 109.46729 * 299.99834 * 23 22 13 39 39 H 1.08990 * 109.46954 * 59.99687 * 23 22 13 40 40 H 0.96705 * 116.99933 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4021 2.2217 0.0005 5 6 3.5295 1.2787 -0.0006 6 6 4.2761 2.4382 -0.0001 7 6 5.6195 2.0563 0.0051 8 6 5.6435 0.6740 -0.0019 9 6 6.8434 -0.1609 -0.0029 10 6 6.7317 -1.5077 0.0929 11 6 7.8963 -2.3100 0.2007 12 8 8.9905 -1.7848 0.3016 13 7 7.7921 -3.6538 0.1914 14 6 6.5611 -4.2427 0.1678 15 1 5.7779 -3.8832 0.8189 16 6 6.3148 -5.3073 -0.6959 17 7 7.2783 -5.7719 -1.4559 18 14 4.6130 -6.0735 -0.7724 19 1 3.7114 -5.3728 0.1771 20 1 4.0749 -5.9477 -2.1508 21 1 4.6995 -7.5095 -0.4040 22 6 9.0003 -4.4822 0.2068 23 6 9.3971 -4.7788 1.6544 24 6 10.6402 -5.6305 1.6702 25 8 11.1557 -5.9663 0.6302 26 8 11.1748 -6.0160 2.8395 27 8 4.3736 0.2281 -0.0016 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.8948 3.4486 0.0013 32 1 6.4756 2.7146 0.0112 33 1 7.8190 0.2959 -0.0801 34 1 5.7559 -1.9704 0.0873 35 1 7.0899 -6.4640 -2.1090 36 1 8.8052 -5.4188 -0.3156 37 1 9.8116 -3.9508 -0.2908 38 1 9.5921 -3.8422 2.1768 39 1 8.5858 -5.3101 2.1519 40 1 11.9721 -6.5618 2.7990 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598974627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:44 Heat of formation + Delta-G solvation = -169.789207 kcal Electronic energy + Delta-G solvation = -28114.575003 eV Core-core repulsion = 23669.488238 eV Total energy + Delta-G solvation = -4445.086765 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.54464 -40.25908 -39.84694 -38.91000 -36.65801 -35.85349 -35.25479 -33.51595 -33.03303 -32.07602 -30.85751 -29.58203 -27.70918 -25.43755 -25.19628 -23.55755 -22.04202 -21.43688 -20.63345 -19.97132 -19.11961 -18.44349 -17.75088 -17.23819 -16.91183 -16.83155 -16.48730 -16.00782 -15.78467 -15.56978 -15.18046 -14.57391 -14.42199 -14.08116 -13.83088 -13.41378 -13.29752 -13.19033 -13.10991 -12.73358 -12.60088 -12.37574 -12.22365 -12.01217 -11.73363 -11.35552 -11.16131 -11.13622 -11.00542 -11.00443 -10.87443 -10.45039 -10.30124 -10.13095 -10.10479 -9.88561 -9.31862 -8.80272 -8.00250 -7.67478 -6.52696 -4.38956 0.43463 1.51101 2.21093 2.67441 2.70647 2.82813 2.94547 3.03638 3.11777 3.15025 3.43590 3.92604 4.26638 4.44796 4.71583 4.76352 4.83474 4.91855 4.99963 5.02217 5.32444 5.47333 5.59083 5.60418 5.71863 5.76178 5.81662 6.00804 6.06196 6.15386 6.25969 6.33070 6.47762 6.72217 6.83303 6.91472 6.95422 7.12453 7.48215 7.52375 7.74128 8.17574 8.30921 8.83514 9.20459 9.66361 10.42154 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.003010 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.011251 B = 9300.417219 C =11014.489313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.346 6.346 3 C 0.556 3.444 4 O -0.497 6.497 5 C -0.088 4.088 6 C -0.095 4.095 7 C -0.219 4.219 8 C 0.092 3.908 9 C -0.086 4.086 10 C -0.098 4.098 11 C 0.484 3.516 12 O -0.604 6.604 13 N -0.416 5.416 14 C -0.347 4.347 15 H 0.095 0.905 16 C 0.051 3.949 17 N -0.854 5.854 18 Si 0.920 3.080 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.278 1.278 22 C 0.109 3.891 23 C -0.122 4.122 24 C 0.483 3.517 25 O -0.513 6.513 26 O -0.525 6.525 27 O -0.139 6.139 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.137 0.863 35 H 0.276 0.724 36 H 0.137 0.863 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.633 6.947 4.379 10.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.262 6.262 3 C 0.402 3.598 4 O -0.387 6.387 5 C -0.139 4.139 6 C -0.114 4.114 7 C -0.238 4.238 8 C 0.038 3.962 9 C -0.107 4.107 10 C -0.118 4.118 11 C 0.277 3.723 12 O -0.492 6.492 13 N -0.132 5.132 14 C -0.475 4.475 15 H 0.113 0.887 16 C -0.157 4.157 17 N -0.489 5.489 18 Si 0.745 3.255 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.204 1.204 22 C -0.015 4.015 23 C -0.161 4.161 24 C 0.326 3.674 25 O -0.401 6.401 26 O -0.337 6.337 27 O -0.034 6.034 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.181 0.819 32 H 0.182 0.818 33 H 0.178 0.822 34 H 0.155 0.845 35 H 0.088 0.912 36 H 0.155 0.845 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -6.621 7.036 4.039 10.471 hybrid contribution -0.529 -0.734 -0.139 0.916 sum -7.150 6.301 3.900 10.298 Atomic orbital electron populations 1.23349 0.75524 1.04173 1.02634 1.86713 1.23829 1.31722 1.83889 1.19244 0.85552 0.82030 0.72985 1.90912 1.64497 1.35949 1.47333 1.20888 0.87691 0.86159 1.19143 1.22024 0.92365 0.98264 0.98793 1.22122 0.97519 0.93526 1.10653 1.21719 0.82325 0.93062 0.99066 1.21473 0.92763 0.92940 1.03538 1.22697 1.01124 0.93726 0.94282 1.17216 0.88701 0.83560 0.82859 1.90702 1.28707 1.73301 1.56529 1.43336 1.06326 1.03221 1.60276 1.19569 0.89185 1.16072 1.22657 0.88721 1.25681 0.98962 0.96639 0.94442 1.69468 1.31558 1.27407 1.20452 0.85967 0.81704 0.78977 0.78845 1.18719 1.20164 1.20353 1.21682 0.87491 1.00558 0.91731 1.21817 0.92038 0.98793 1.03478 1.23761 0.85448 0.77757 0.80457 1.90702 1.61784 1.53758 1.33847 1.84592 1.45602 1.66864 1.36630 1.84217 1.15441 1.34224 1.69523 0.91642 0.91641 0.87648 0.81878 0.81790 0.82166 0.84479 0.91220 0.84535 0.91741 0.88632 0.87813 0.74146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.57 101.05 1.07 1.41 16 2 O -0.35 -4.70 10.58 -42.55 -0.45 -5.15 16 3 C 0.56 8.01 7.94 34.15 0.27 8.28 16 4 O -0.50 -7.50 16.66 -19.34 -0.32 -7.82 16 5 C -0.09 -1.30 7.21 -36.28 -0.26 -1.56 16 6 C -0.09 -1.18 10.63 -39.17 -0.42 -1.60 16 7 C -0.22 -2.73 10.88 -39.04 -0.42 -3.16 16 8 C 0.09 1.39 7.02 -36.39 -0.26 1.13 16 9 C -0.09 -1.43 9.59 -37.38 -0.36 -1.79 16 10 C -0.10 -1.90 8.80 -39.19 -0.34 -2.24 16 11 C 0.48 11.05 7.40 -14.88 -0.11 10.94 16 12 O -0.60 -14.81 15.76 5.11 0.08 -14.73 16 13 N -0.42 -9.78 2.51 -117.99 -0.30 -10.08 16 14 C -0.35 -8.07 8.12 -15.09 -0.12 -8.20 16 15 H 0.10 2.09 7.16 -52.48 -0.38 1.72 16 16 C 0.05 1.19 5.38 -17.43 -0.09 1.10 16 17 N -0.85 -21.30 10.74 55.51 0.60 -20.70 16 18 Si 0.92 18.25 29.56 -169.99 -5.02 13.22 16 19 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 20 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 22 C 0.11 2.52 4.26 -4.04 -0.02 2.50 16 23 C -0.12 -2.35 6.14 -27.88 -0.17 -2.53 16 24 C 0.48 8.75 8.33 36.00 0.30 9.05 16 25 O -0.51 -10.81 16.74 -18.75 -0.31 -11.13 16 26 O -0.53 -7.39 13.42 -39.25 -0.53 -7.92 16 27 O -0.14 -2.27 10.30 3.32 0.03 -2.23 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.16 2.54 7.49 -52.49 -0.39 2.15 16 34 H 0.14 2.65 6.35 -52.49 -0.33 2.32 16 35 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 36 H 0.14 3.45 5.13 -51.93 -0.27 3.18 16 37 H 0.06 1.59 7.44 -51.93 -0.39 1.21 16 38 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 39 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 40 H 0.40 3.69 9.10 45.56 0.41 4.11 16 LS Contribution 367.65 15.07 5.54 5.54 Total: -1.00 -30.93 367.65 -5.05 -35.98 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -3.43 Total: 11.68 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: -0.94 Total: 13.34 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.30 Total: -30.78 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -1.50 Total: -48.98 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.02 Total: 13.22 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.93 -5.05 -35.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598974627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.810 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds