Wall clock time and date at job start Tue Mar 31 2020 20:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34894 * 117.00000 * 2 1 4 4 O 1.21597 * 119.99972 * 0.02562 * 3 2 1 5 5 C 1.46713 * 119.99998 * 180.02562 * 3 2 1 6 6 C 1.37902 * 125.77733 * 180.02562 * 5 3 2 7 7 C 1.39667 * 106.91003 * 179.74288 * 6 5 3 8 8 C 1.38256 * 106.85870 * 0.41077 * 7 6 5 9 9 C 1.46177 * 125.82037 * 179.84968 * 8 7 6 10 10 C 1.35485 * 119.99821 * 174.96670 * 9 8 7 11 11 C 1.41835 * 119.99743 * 185.08919 * 10 9 8 12 12 O 1.21792 * 120.00550 * 5.14484 * 11 10 9 13 13 N 1.34783 * 119.99768 * 185.15178 * 11 10 9 14 14 C 1.36480 * 120.00137 * 355.65213 * 13 11 10 15 15 H 1.08005 * 120.00072 * 314.96067 * 14 13 11 16 16 C 1.39289 * 120.00253 * 134.96141 * 14 13 11 17 17 N 1.31214 * 119.99545 * 2.18590 * 16 14 13 18 18 Si 1.86791 * 120.00229 * 182.19265 * 16 14 13 19 19 H 1.48507 * 109.47317 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47668 * 119.99801 * 18 16 14 21 21 H 1.48507 * 109.47211 * 239.99862 * 18 16 14 22 22 C 1.46497 * 119.99872 * 175.65519 * 13 11 10 23 23 C 1.53009 * 109.47359 * 89.99956 * 22 13 11 24 24 C 1.50696 * 109.47221 * 180.02562 * 23 22 13 25 25 O 1.20827 * 120.00250 * 359.97438 * 24 23 22 26 26 O 1.34229 * 119.99818 * 179.97438 * 24 23 22 27 27 O 1.34588 * 108.35307 * 359.58264 * 8 7 6 28 28 H 1.09001 * 109.46883 * 299.99559 * 1 2 3 29 29 H 1.09001 * 109.47482 * 59.99710 * 1 2 3 30 30 H 1.09001 * 109.47415 * 179.97438 * 1 2 3 31 31 H 1.08000 * 126.54607 * 0.03857 * 6 5 3 32 32 H 1.07998 * 126.57277 * 180.29689 * 7 6 5 33 33 H 1.08002 * 120.00018 * 354.96124 * 9 8 7 34 34 H 1.07994 * 120.00340 * 5.08084 * 10 9 8 35 35 H 0.97005 * 119.99874 * 185.00753 * 17 16 14 36 36 H 1.09001 * 109.47065 * 209.99585 * 22 13 11 37 37 H 1.09003 * 109.47148 * 329.99612 * 22 13 11 38 38 H 1.09001 * 109.46729 * 299.99834 * 23 22 13 39 39 H 1.08990 * 109.46954 * 59.99687 * 23 22 13 40 40 H 0.96705 * 116.99933 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4021 2.2217 0.0005 5 6 3.5295 1.2787 -0.0006 6 6 4.2761 2.4382 -0.0001 7 6 5.6195 2.0563 0.0051 8 6 5.6435 0.6740 -0.0019 9 6 6.8434 -0.1609 -0.0029 10 6 6.7317 -1.5077 0.0929 11 6 7.8963 -2.3100 0.2007 12 8 8.9905 -1.7848 0.3016 13 7 7.7921 -3.6538 0.1914 14 6 6.5611 -4.2427 0.1678 15 1 5.7779 -3.8832 0.8189 16 6 6.3148 -5.3073 -0.6959 17 7 7.2783 -5.7719 -1.4559 18 14 4.6130 -6.0735 -0.7724 19 1 3.7114 -5.3728 0.1771 20 1 4.0749 -5.9477 -2.1508 21 1 4.6995 -7.5095 -0.4040 22 6 9.0003 -4.4822 0.2068 23 6 9.3971 -4.7788 1.6544 24 6 10.6402 -5.6305 1.6702 25 8 11.1557 -5.9663 0.6302 26 8 11.1748 -6.0160 2.8395 27 8 4.3736 0.2281 -0.0016 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.8948 3.4486 0.0013 32 1 6.4756 2.7146 0.0112 33 1 7.8190 0.2959 -0.0801 34 1 5.7559 -1.9704 0.0873 35 1 7.0899 -6.4640 -2.1090 36 1 8.8052 -5.4188 -0.3156 37 1 9.8116 -3.9508 -0.2908 38 1 9.5921 -3.8422 2.1768 39 1 8.5858 -5.3101 2.1519 40 1 11.9721 -6.5618 2.7990 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598974627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:43 Heat of formation + Delta-G solvation = -189.075388 kcal Electronic energy + Delta-G solvation = -28115.411315 eV Core-core repulsion = 23669.488238 eV Total energy + Delta-G solvation = -4445.923077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.67822 -41.35410 -41.30287 -40.59285 -37.70484 -37.31041 -36.90402 -34.92280 -34.17278 -33.82679 -32.47178 -30.76517 -28.64307 -27.17577 -26.62316 -24.91304 -23.22860 -22.64647 -21.93482 -21.41907 -20.71850 -19.54080 -19.16685 -18.61585 -18.25451 -18.00932 -17.90810 -17.57974 -17.01052 -16.86294 -16.61962 -16.21817 -15.93424 -15.57376 -15.08959 -14.82513 -14.34343 -14.30566 -14.20564 -14.10598 -14.08360 -13.72560 -13.55302 -13.27537 -13.11547 -12.97164 -12.81141 -12.59117 -12.53125 -12.07496 -12.01530 -11.91866 -11.88442 -11.63744 -11.52938 -11.09653 -11.02616 -10.59862 -9.59208 -9.15247 -8.29216 -6.22305 -0.80207 0.31545 1.18374 1.21514 1.40546 1.48210 1.52499 1.60996 1.74370 1.89752 2.05097 2.29893 2.58332 2.98565 3.10706 3.54899 3.75521 3.80926 4.04346 4.17229 4.22475 4.27578 4.31451 4.40877 4.47165 4.53055 4.66252 4.67498 4.77533 4.84134 4.97585 5.03275 5.08315 5.31247 5.32209 5.40709 5.56389 5.66511 5.78507 5.97775 6.38122 6.46539 7.02370 7.04861 7.44950 7.90073 8.66849 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.003010 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.011251 B = 9300.417219 C =11014.489313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.556 3.444 4 O -0.506 6.506 5 C -0.099 4.099 6 C -0.087 4.087 7 C -0.181 4.181 8 C 0.051 3.949 9 C -0.034 4.034 10 C -0.146 4.146 11 C 0.485 3.515 12 O -0.630 6.630 13 N -0.433 5.433 14 C -0.353 4.353 15 H 0.103 0.897 16 C 0.009 3.991 17 N -0.891 5.891 18 Si 0.983 3.017 19 H -0.252 1.252 20 H -0.280 1.280 21 H -0.277 1.277 22 C 0.113 3.887 23 C -0.115 4.115 24 C 0.495 3.505 25 O -0.548 6.548 26 O -0.508 6.508 27 O -0.160 6.160 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.129 0.871 31 H 0.193 0.807 32 H 0.201 0.799 33 H 0.171 0.829 34 H 0.133 0.867 35 H 0.275 0.725 36 H 0.116 0.884 37 H 0.035 0.965 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.062 8.768 5.418 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.402 3.598 4 O -0.398 6.398 5 C -0.149 4.149 6 C -0.106 4.106 7 C -0.200 4.200 8 C -0.001 4.001 9 C -0.054 4.054 10 C -0.166 4.166 11 C 0.278 3.722 12 O -0.521 6.521 13 N -0.148 5.148 14 C -0.481 4.481 15 H 0.120 0.880 16 C -0.195 4.195 17 N -0.528 5.528 18 Si 0.806 3.194 19 H -0.175 1.175 20 H -0.206 1.206 21 H -0.202 1.202 22 C -0.011 4.011 23 C -0.153 4.153 24 C 0.339 3.661 25 O -0.439 6.439 26 O -0.322 6.322 27 O -0.056 6.056 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.147 0.853 31 H 0.210 0.790 32 H 0.218 0.782 33 H 0.188 0.812 34 H 0.151 0.849 35 H 0.086 0.914 36 H 0.134 0.866 37 H 0.054 0.946 38 H 0.118 0.882 39 H 0.132 0.868 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -8.048 8.846 5.118 13.008 hybrid contribution -0.156 -1.043 -0.418 1.134 sum -8.204 7.803 4.699 12.258 Atomic orbital electron populations 1.23700 0.73265 1.06107 1.03399 1.86700 1.26190 1.31417 1.83508 1.19276 0.85591 0.82179 0.72741 1.90899 1.64703 1.36215 1.47957 1.21347 0.88048 0.86695 1.18841 1.22449 0.91989 0.98902 0.97306 1.22605 0.98697 0.92385 1.06270 1.21670 0.81715 0.94013 1.02685 1.21640 0.94018 0.91967 0.97795 1.22354 0.99521 0.94575 1.00196 1.17663 0.89349 0.83555 0.81596 1.90656 1.29896 1.73716 1.57817 1.43466 1.06427 1.03633 1.61322 1.19801 0.89280 1.16113 1.22885 0.87979 1.26449 1.02022 0.97000 0.93994 1.69612 1.33290 1.28368 1.21526 0.85013 0.77786 0.78026 0.78576 1.17539 1.20580 1.20248 1.21430 0.86753 0.99073 0.93796 1.21592 0.93243 0.99545 1.00954 1.23365 0.84877 0.77093 0.80783 1.90700 1.62725 1.55167 1.35318 1.84507 1.46769 1.66847 1.34035 1.84189 1.16022 1.35305 1.70048 0.90826 0.90948 0.85251 0.79005 0.78231 0.81165 0.84928 0.91407 0.86627 0.94596 0.88174 0.86804 0.71190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.57 113.37 1.20 1.66 16 2 O -0.36 -9.39 10.58 -56.63 -0.60 -9.99 16 3 C 0.56 15.13 7.94 70.04 0.56 15.68 16 4 O -0.51 -14.29 16.66 19.52 0.33 -13.96 16 5 C -0.10 -2.71 7.21 24.41 0.18 -2.53 16 6 C -0.09 -1.86 10.63 22.54 0.24 -1.62 16 7 C -0.18 -3.80 10.88 22.62 0.25 -3.55 16 8 C 0.05 1.46 7.02 24.34 0.17 1.63 16 9 C -0.03 -1.08 9.59 23.70 0.23 -0.86 16 10 C -0.15 -5.80 8.80 22.52 0.20 -5.60 16 11 C 0.48 22.87 7.40 85.13 0.63 23.50 16 12 O -0.63 -31.80 15.76 -4.64 -0.07 -31.87 16 13 N -0.43 -21.18 2.51 -645.40 -1.62 -22.79 16 14 C -0.35 -16.90 8.12 84.22 0.68 -16.22 16 15 H 0.10 4.61 7.16 -2.91 -0.02 4.59 16 16 C 0.01 0.44 5.38 85.04 0.46 0.90 16 17 N -0.89 -46.29 10.74 21.72 0.23 -46.06 16 18 Si 0.98 37.89 29.56 68.60 2.03 39.91 16 19 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 20 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.28 -10.54 7.11 99.48 0.71 -9.83 16 22 C 0.11 5.51 4.26 86.38 0.37 5.87 16 23 C -0.11 -4.50 6.14 29.85 0.18 -4.32 16 24 C 0.50 17.95 8.33 71.23 0.59 18.54 16 25 O -0.55 -23.64 16.74 21.96 0.37 -23.27 16 26 O -0.51 -13.44 13.42 -51.41 -0.69 -14.13 16 27 O -0.16 -5.02 10.30 -9.58 -0.10 -5.12 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.19 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.20 2.73 8.06 -2.91 -0.02 2.70 16 33 H 0.17 5.13 7.49 -2.91 -0.02 5.11 16 34 H 0.13 5.31 6.35 -2.91 -0.02 5.29 16 35 H 0.28 13.54 8.31 -92.70 -0.77 12.77 16 36 H 0.12 6.17 5.13 -2.39 -0.01 6.16 16 37 H 0.04 1.89 7.44 -2.39 -0.02 1.87 16 38 H 0.10 3.82 8.14 -2.39 -0.02 3.81 16 39 H 0.11 4.21 8.14 -2.39 -0.02 4.19 16 40 H 0.43 6.90 9.10 -74.05 -0.67 6.23 16 Total: -1.00 -69.63 367.65 6.24 -63.39 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.44 Total: 30.82 kcal Atomic # 6 Polarization: 27.15 SS G_CDS: 5.93 Total: 33.08 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: -1.39 Total: -68.86 kcal Atomic # 8 Polarization: -97.58 SS G_CDS: -0.77 Total: -98.34 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.91 kcal Total: -69.63 6.24 -63.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598974627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.689 kcal (2) G-P(sol) polarization free energy of solvation -69.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds