Wall clock time and date at job start Tue Mar 31 2020 20:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34884 * 117.00341 * 2 1 4 4 O 1.21598 * 119.99813 * 0.02562 * 3 2 1 5 5 C 1.46721 * 120.00564 * 179.97438 * 3 2 1 6 6 C 1.37895 * 125.78115 * 180.02562 * 5 3 2 7 7 C 1.39677 * 106.90719 * 179.76241 * 6 5 3 8 8 C 1.38241 * 106.85936 * 0.41132 * 7 6 5 9 9 C 1.46182 * 125.82185 * 179.84022 * 8 7 6 10 10 C 1.35484 * 120.00233 * 218.68884 * 9 8 7 11 11 C 1.41834 * 120.00305 * 9.10054 * 10 9 8 12 12 O 1.21799 * 119.99756 * 5.45254 * 11 10 9 13 13 N 1.34775 * 120.00178 * 185.44330 * 11 10 9 14 14 C 1.36484 * 120.00025 * 4.81110 * 13 11 10 15 15 H 1.07997 * 120.00224 * 313.72975 * 14 13 11 16 16 C 1.39291 * 119.99873 * 133.73016 * 14 13 11 17 17 N 1.31215 * 119.99815 * 349.75697 * 16 14 13 18 18 Si 1.86793 * 119.99931 * 169.75844 * 16 14 13 19 19 H 1.48508 * 109.47264 * 89.99861 * 18 16 14 20 20 H 1.48496 * 109.47406 * 210.00084 * 18 16 14 21 21 H 1.48498 * 109.47112 * 330.00156 * 18 16 14 22 22 C 1.46502 * 119.99960 * 184.81201 * 13 11 10 23 23 C 1.52998 * 109.47152 * 89.99821 * 22 13 11 24 24 C 1.50708 * 109.46941 * 179.97438 * 23 22 13 25 25 O 1.20822 * 119.99750 * 0.02562 * 24 23 22 26 26 O 1.34228 * 119.99538 * 180.02562 * 24 23 22 27 27 O 1.34587 * 108.35725 * 359.58447 * 8 7 6 28 28 H 1.08996 * 109.46891 * 300.00278 * 1 2 3 29 29 H 1.09003 * 109.46999 * 59.99830 * 1 2 3 30 30 H 1.08991 * 109.47373 * 179.97438 * 1 2 3 31 31 H 1.07997 * 126.54938 * 0.04183 * 6 5 3 32 32 H 1.07999 * 126.56446 * 180.27193 * 7 6 5 33 33 H 1.08008 * 119.99444 * 38.69269 * 9 8 7 34 34 H 1.07998 * 119.99820 * 189.38174 * 10 9 8 35 35 H 0.97002 * 120.00177 * 185.02525 * 17 16 14 36 36 H 1.08997 * 109.46813 * 210.00575 * 22 13 11 37 37 H 1.09000 * 109.46640 * 329.99852 * 22 13 11 38 38 H 1.08996 * 109.47368 * 300.00188 * 23 22 13 39 39 H 1.09007 * 109.46670 * 60.00416 * 23 22 13 40 40 H 0.96705 * 116.99351 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4022 2.2216 0.0005 5 6 3.5296 1.2786 0.0006 6 6 4.2762 2.4380 0.0011 7 6 5.6197 2.0560 0.0071 8 6 5.6436 0.6738 0.0004 9 6 6.8435 -0.1611 0.0000 10 6 6.8787 -1.2962 -0.7388 11 6 5.8356 -1.5768 -1.6580 12 8 4.9607 -0.7530 -1.8563 13 7 5.8126 -2.7549 -2.3122 14 6 6.7357 -3.7165 -2.0189 15 1 7.7796 -3.4540 -1.9310 16 6 6.3315 -5.0364 -1.8329 17 7 5.0548 -5.3245 -1.7393 18 14 7.6068 -6.3962 -1.7166 19 1 8.0067 -6.5800 -0.2982 20 1 7.0297 -7.6620 -2.2361 21 1 8.7981 -6.0278 -2.5230 22 6 4.7967 -3.0034 -3.3381 23 6 5.3256 -2.5492 -4.7000 24 6 4.2808 -2.8054 -5.7555 25 8 3.2217 -3.3001 -5.4496 26 8 4.5268 -2.4840 -7.0353 27 8 4.3737 0.2280 0.0001 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8949 3.4485 0.0019 32 1 6.4758 2.7144 0.0132 33 1 7.7019 0.1269 0.5888 34 1 7.6987 -1.9897 -0.6245 35 1 4.7757 -6.2312 -1.5372 36 1 4.5692 -4.0688 -3.3735 37 1 3.8917 -2.4465 -3.0956 38 1 5.5531 -1.4838 -4.6646 39 1 6.2307 -3.1062 -4.9425 40 1 3.8262 -2.6668 -7.6763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598974628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:47 Heat of formation + Delta-G solvation = -159.913841 kcal Electronic energy + Delta-G solvation = -29485.755047 eV Core-core repulsion = 25041.096510 eV Total energy + Delta-G solvation = -4444.658537 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.01565 -39.90882 -39.84920 -38.83243 -36.28250 -35.87595 -35.22024 -33.27013 -32.50212 -32.02699 -30.77712 -29.26584 -27.36603 -25.34647 -25.00336 -23.39389 -21.72354 -21.22472 -20.44242 -19.89283 -19.00981 -18.11170 -17.76663 -17.17489 -16.60072 -16.51189 -16.31397 -15.99979 -15.58077 -15.24872 -14.83853 -14.65133 -13.96852 -13.87617 -13.58217 -13.34121 -13.05014 -12.82194 -12.79057 -12.68052 -12.54746 -12.33173 -12.02648 -11.88052 -11.75356 -11.28610 -11.18883 -11.15116 -10.82524 -10.65457 -10.63846 -10.50573 -10.17645 -10.10467 -9.63059 -9.48245 -9.27078 -8.70686 -7.72397 -7.53677 -6.50180 -4.32302 0.89474 1.73226 2.64013 2.68901 2.90240 3.04174 3.11857 3.13951 3.23437 3.39553 3.50473 3.95125 4.35307 4.76009 4.86039 4.92999 5.16732 5.20872 5.22968 5.29040 5.55240 5.61530 5.64856 5.75856 5.89548 5.96026 5.98759 6.06089 6.25687 6.29252 6.43747 6.47907 6.63575 6.75943 6.81007 6.94928 7.19184 7.36168 7.38220 7.83293 7.93482 8.17466 8.27951 8.89811 9.29016 9.76572 10.51271 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.009270 B = 0.004234 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.656406 B = 6612.160835 C = 7745.828632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.340 6.340 3 C 0.558 3.442 4 O -0.506 6.506 5 C -0.077 4.077 6 C -0.110 4.110 7 C -0.234 4.234 8 C 0.110 3.890 9 C -0.088 4.088 10 C -0.109 4.109 11 C 0.482 3.518 12 O -0.582 6.582 13 N -0.417 5.417 14 C -0.358 4.358 15 H 0.092 0.908 16 C 0.051 3.949 17 N -0.851 5.851 18 Si 0.918 3.082 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.266 1.266 22 C 0.125 3.875 23 C -0.123 4.123 24 C 0.482 3.518 25 O -0.513 6.513 26 O -0.525 6.525 27 O -0.095 6.095 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.275 0.725 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 6.898 0.366 7.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.256 6.256 3 C 0.404 3.596 4 O -0.397 6.397 5 C -0.129 4.129 6 C -0.130 4.130 7 C -0.253 4.253 8 C 0.055 3.945 9 C -0.109 4.109 10 C -0.129 4.129 11 C 0.274 3.726 12 O -0.469 6.469 13 N -0.134 5.134 14 C -0.486 4.486 15 H 0.109 0.891 16 C -0.158 4.158 17 N -0.485 5.485 18 Si 0.744 3.256 19 H -0.200 1.200 20 H -0.206 1.206 21 H -0.191 1.191 22 C 0.001 3.999 23 C -0.162 4.162 24 C 0.325 3.675 25 O -0.400 6.400 26 O -0.337 6.337 27 O 0.013 5.987 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.122 0.878 31 H 0.173 0.827 32 H 0.172 0.828 33 H 0.171 0.829 34 H 0.162 0.838 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 0.821 6.940 0.572 7.012 hybrid contribution 0.047 -0.876 -0.505 1.012 sum 0.868 6.064 0.066 6.126 Atomic orbital electron populations 1.23297 0.76088 1.03962 1.02278 1.86767 1.23352 1.31761 1.83694 1.19350 0.85867 0.81825 0.72518 1.90868 1.64792 1.36031 1.48056 1.20816 0.87740 0.86658 1.17725 1.21826 0.92466 0.97819 1.00875 1.21923 0.97138 0.93524 1.12695 1.21202 0.83364 0.92293 0.97638 1.21426 0.93266 0.94488 1.01711 1.22783 1.00324 0.95060 0.94744 1.17420 0.86884 0.84816 0.83474 1.90753 1.39596 1.48592 1.67978 1.43156 1.27889 1.12405 1.29959 1.19367 0.89640 0.87674 1.51881 0.89090 1.25637 0.96315 0.99190 0.94654 1.69707 1.14780 1.21604 1.42387 0.86075 0.80462 0.80194 0.78906 1.19950 1.20642 1.19086 1.21198 0.91139 1.04613 0.82933 1.21846 0.97081 1.04289 0.93008 1.23762 0.88160 0.73597 0.82013 1.90708 1.26925 1.40562 1.81833 1.84589 1.50084 1.79224 1.19755 1.84469 1.14775 1.32925 1.66489 0.91945 0.91821 0.87838 0.82704 0.82752 0.82941 0.83758 0.91430 0.86962 0.91243 0.88631 0.87717 0.74107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.57 101.05 1.07 1.57 16 2 O -0.34 -6.37 10.58 -42.52 -0.45 -6.82 16 3 C 0.56 10.67 7.94 34.16 0.27 10.94 16 4 O -0.51 -9.67 16.66 -19.34 -0.32 -9.99 16 5 C -0.08 -1.51 7.21 -36.28 -0.26 -1.77 16 6 C -0.11 -1.81 10.63 -39.17 -0.42 -2.22 16 7 C -0.23 -3.60 10.88 -39.04 -0.42 -4.02 16 8 C 0.11 2.00 5.54 -36.39 -0.20 1.79 16 9 C -0.09 -1.39 10.15 -37.38 -0.38 -1.77 16 10 C -0.11 -2.00 9.21 -39.19 -0.36 -2.37 16 11 C 0.48 11.02 7.25 -14.89 -0.11 10.91 16 12 O -0.58 -14.50 11.89 -19.77 -0.23 -14.74 16 13 N -0.42 -9.80 2.45 -118.00 -0.29 -10.09 16 14 C -0.36 -8.23 8.26 -15.09 -0.12 -8.35 16 15 H 0.09 1.92 6.89 -52.49 -0.36 1.56 16 16 C 0.05 1.20 5.15 -17.42 -0.09 1.11 16 17 N -0.85 -21.81 11.42 55.51 0.63 -21.17 16 18 Si 0.92 18.03 29.57 -169.99 -5.03 13.00 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 22 C 0.13 2.92 4.30 -4.04 -0.02 2.91 16 23 C -0.12 -2.36 6.14 -27.88 -0.17 -2.53 16 24 C 0.48 8.77 8.33 36.01 0.30 9.07 16 25 O -0.51 -10.93 16.74 -18.75 -0.31 -11.24 16 26 O -0.52 -7.42 13.42 -39.25 -0.53 -7.95 16 27 O -0.10 -2.03 7.82 -22.72 -0.18 -2.21 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 32 H 0.15 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.15 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.14 2.38 6.48 -52.49 -0.34 2.04 16 35 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 36 H 0.11 2.87 5.71 -51.93 -0.30 2.57 16 37 H 0.07 1.78 7.32 -51.93 -0.38 1.40 16 38 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 39 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 40 H 0.40 3.76 9.10 45.56 0.41 4.17 16 LS Contribution 362.10 15.07 5.46 5.46 Total: -1.00 -33.01 362.10 -5.65 -38.65 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -3.48 Total: 11.83 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: -0.92 Total: 15.28 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.34 Total: -31.27 kcal Atomic # 8 Polarization: -50.92 SS G_CDS: -2.03 Total: -52.95 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.01 -5.65 -38.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598974628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.261 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds