Wall clock time and date at job start Tue Mar 31 2020 20:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34884 * 117.00341 * 2 1 4 4 O 1.21598 * 119.99813 * 0.02562 * 3 2 1 5 5 C 1.46721 * 120.00564 * 179.97438 * 3 2 1 6 6 C 1.37895 * 125.78115 * 180.02562 * 5 3 2 7 7 C 1.39677 * 106.90719 * 179.76241 * 6 5 3 8 8 C 1.38241 * 106.85936 * 0.41132 * 7 6 5 9 9 C 1.46182 * 125.82185 * 179.84022 * 8 7 6 10 10 C 1.35484 * 120.00233 * 218.68884 * 9 8 7 11 11 C 1.41834 * 120.00305 * 9.10054 * 10 9 8 12 12 O 1.21799 * 119.99756 * 5.45254 * 11 10 9 13 13 N 1.34775 * 120.00178 * 185.44330 * 11 10 9 14 14 C 1.36484 * 120.00025 * 4.81110 * 13 11 10 15 15 H 1.07997 * 120.00224 * 313.72975 * 14 13 11 16 16 C 1.39291 * 119.99873 * 133.73016 * 14 13 11 17 17 N 1.31215 * 119.99815 * 349.75697 * 16 14 13 18 18 Si 1.86793 * 119.99931 * 169.75844 * 16 14 13 19 19 H 1.48508 * 109.47264 * 89.99861 * 18 16 14 20 20 H 1.48496 * 109.47406 * 210.00084 * 18 16 14 21 21 H 1.48498 * 109.47112 * 330.00156 * 18 16 14 22 22 C 1.46502 * 119.99960 * 184.81201 * 13 11 10 23 23 C 1.52998 * 109.47152 * 89.99821 * 22 13 11 24 24 C 1.50708 * 109.46941 * 179.97438 * 23 22 13 25 25 O 1.20822 * 119.99750 * 0.02562 * 24 23 22 26 26 O 1.34228 * 119.99538 * 180.02562 * 24 23 22 27 27 O 1.34587 * 108.35725 * 359.58447 * 8 7 6 28 28 H 1.08996 * 109.46891 * 300.00278 * 1 2 3 29 29 H 1.09003 * 109.46999 * 59.99830 * 1 2 3 30 30 H 1.08991 * 109.47373 * 179.97438 * 1 2 3 31 31 H 1.07997 * 126.54938 * 0.04183 * 6 5 3 32 32 H 1.07999 * 126.56446 * 180.27193 * 7 6 5 33 33 H 1.08008 * 119.99444 * 38.69269 * 9 8 7 34 34 H 1.07998 * 119.99820 * 189.38174 * 10 9 8 35 35 H 0.97002 * 120.00177 * 185.02525 * 17 16 14 36 36 H 1.08997 * 109.46813 * 210.00575 * 22 13 11 37 37 H 1.09000 * 109.46640 * 329.99852 * 22 13 11 38 38 H 1.08996 * 109.47368 * 300.00188 * 23 22 13 39 39 H 1.09007 * 109.46670 * 60.00416 * 23 22 13 40 40 H 0.96705 * 116.99351 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4022 2.2216 0.0005 5 6 3.5296 1.2786 0.0006 6 6 4.2762 2.4380 0.0011 7 6 5.6197 2.0560 0.0071 8 6 5.6436 0.6738 0.0004 9 6 6.8435 -0.1611 0.0000 10 6 6.8787 -1.2962 -0.7388 11 6 5.8356 -1.5768 -1.6580 12 8 4.9607 -0.7530 -1.8563 13 7 5.8126 -2.7549 -2.3122 14 6 6.7357 -3.7165 -2.0189 15 1 7.7796 -3.4540 -1.9310 16 6 6.3315 -5.0364 -1.8329 17 7 5.0548 -5.3245 -1.7393 18 14 7.6068 -6.3962 -1.7166 19 1 8.0067 -6.5800 -0.2982 20 1 7.0297 -7.6620 -2.2361 21 1 8.7981 -6.0278 -2.5230 22 6 4.7967 -3.0034 -3.3381 23 6 5.3256 -2.5492 -4.7000 24 6 4.2808 -2.8054 -5.7555 25 8 3.2217 -3.3001 -5.4496 26 8 4.5268 -2.4840 -7.0353 27 8 4.3737 0.2280 0.0001 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8949 3.4485 0.0019 32 1 6.4758 2.7144 0.0132 33 1 7.7019 0.1269 0.5888 34 1 7.6987 -1.9897 -0.6245 35 1 4.7757 -6.2312 -1.5372 36 1 4.5692 -4.0688 -3.3735 37 1 3.8917 -2.4465 -3.0956 38 1 5.5531 -1.4838 -4.6646 39 1 6.2307 -3.1062 -4.9425 40 1 3.8262 -2.6668 -7.6763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598974628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:47 Heat of formation + Delta-G solvation = -180.779289 kcal Electronic energy + Delta-G solvation = -29486.659841 eV Core-core repulsion = 25041.096510 eV Total energy + Delta-G solvation = -4445.563331 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.39757 -41.38498 -41.28330 -40.49246 -37.69250 -37.31297 -36.88237 -34.71993 -33.93168 -33.71306 -32.42144 -30.62308 -28.59256 -27.08504 -26.54522 -24.86427 -23.12016 -22.58946 -21.90761 -21.43457 -20.61506 -19.51540 -19.19919 -18.64846 -18.10012 -18.02583 -17.76241 -17.58990 -17.05511 -16.71697 -16.42429 -16.21762 -15.52101 -15.36250 -14.99021 -14.76774 -14.33829 -14.31732 -14.18802 -14.06720 -13.93194 -13.77369 -13.53392 -13.26575 -13.11665 -12.90824 -12.77226 -12.59754 -12.49459 -12.09702 -12.05660 -11.95550 -11.88377 -11.68705 -11.08667 -10.94252 -10.79044 -10.43691 -9.40973 -9.03831 -8.26343 -6.14704 -0.51368 0.37334 1.16217 1.40917 1.47453 1.53110 1.57884 1.63734 1.85906 2.00994 2.19981 2.33690 2.70309 3.13306 3.19142 3.62267 3.88697 3.97793 3.98852 4.11466 4.15335 4.22802 4.38459 4.49318 4.55114 4.60893 4.66418 4.71952 4.80138 4.92478 4.99110 5.08575 5.15784 5.34580 5.36892 5.50686 5.57487 5.62732 6.03259 6.09348 6.40101 6.53871 6.97250 7.12936 7.56390 8.03728 8.76684 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.009270 B = 0.004234 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.656406 B = 6612.160835 C = 7745.828632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.368 6.368 3 C 0.553 3.447 4 O -0.515 6.515 5 C -0.116 4.116 6 C -0.100 4.100 7 C -0.207 4.207 8 C 0.073 3.927 9 C -0.043 4.043 10 C -0.150 4.150 11 C 0.474 3.526 12 O -0.612 6.612 13 N -0.436 5.436 14 C -0.358 4.358 15 H 0.114 0.886 16 C 0.002 3.998 17 N -0.900 5.900 18 Si 0.988 3.012 19 H -0.270 1.270 20 H -0.293 1.293 21 H -0.248 1.248 22 C 0.134 3.866 23 C -0.113 4.113 24 C 0.493 3.507 25 O -0.551 6.551 26 O -0.506 6.506 27 O -0.134 6.134 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.181 0.819 32 H 0.201 0.799 33 H 0.212 0.788 34 H 0.164 0.836 35 H 0.271 0.729 36 H 0.086 0.914 37 H 0.029 0.971 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.635 8.477 0.534 9.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.284 6.284 3 C 0.400 3.600 4 O -0.407 6.407 5 C -0.167 4.167 6 C -0.119 4.119 7 C -0.226 4.226 8 C 0.019 3.981 9 C -0.063 4.063 10 C -0.170 4.170 11 C 0.268 3.732 12 O -0.501 6.501 13 N -0.153 5.153 14 C -0.486 4.486 15 H 0.131 0.869 16 C -0.201 4.201 17 N -0.536 5.536 18 Si 0.811 3.189 19 H -0.195 1.195 20 H -0.219 1.219 21 H -0.172 1.172 22 C 0.010 3.990 23 C -0.152 4.152 24 C 0.337 3.663 25 O -0.442 6.442 26 O -0.320 6.320 27 O -0.027 6.027 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.142 0.858 31 H 0.199 0.801 32 H 0.218 0.782 33 H 0.229 0.771 34 H 0.182 0.818 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.047 0.953 38 H 0.119 0.881 39 H 0.139 0.861 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 3.734 8.543 0.710 9.351 hybrid contribution -0.943 -1.160 -0.552 1.594 sum 2.791 7.383 0.158 7.895 Atomic orbital electron populations 1.23643 0.73655 1.05756 1.03333 1.86744 1.26054 1.32051 1.83583 1.19503 0.86234 0.81838 0.72385 1.90832 1.65051 1.36006 1.48849 1.21260 0.88050 0.87542 1.19861 1.22294 0.92787 0.98047 0.98779 1.22457 0.97945 0.92691 1.09478 1.22014 0.83137 0.94170 0.98823 1.22199 0.93427 0.91829 0.98886 1.22718 1.00381 0.97502 0.96435 1.18174 0.87420 0.84002 0.83653 1.90734 1.41039 1.49338 1.68976 1.43345 1.28108 1.13083 1.30756 1.19821 0.90423 0.87554 1.50787 0.86914 1.26540 0.97807 1.01539 0.94262 1.69883 1.17154 1.21717 1.44877 0.85005 0.78326 0.76534 0.79032 1.19516 1.21930 1.17154 1.20853 0.90431 1.02259 0.85505 1.21608 0.97654 1.04576 0.91328 1.23450 0.87063 0.72761 0.83072 1.90707 1.28304 1.42472 1.82718 1.84504 1.50922 1.78186 1.18388 1.84423 1.16319 1.34429 1.67555 0.90237 0.91403 0.85793 0.80129 0.78162 0.77104 0.81831 0.91960 0.89599 0.95254 0.88099 0.86098 0.71214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.57 113.37 1.20 1.99 16 2 O -0.37 -14.49 10.58 -56.53 -0.60 -15.09 16 3 C 0.55 21.82 7.94 70.04 0.56 22.38 16 4 O -0.51 -19.88 16.66 19.51 0.33 -19.55 16 5 C -0.12 -4.56 7.21 24.41 0.18 -4.39 16 6 C -0.10 -3.07 10.63 22.54 0.24 -2.83 16 7 C -0.21 -5.64 10.88 22.62 0.25 -5.40 16 8 C 0.07 2.49 5.54 24.33 0.13 2.63 16 9 C -0.04 -1.23 10.15 23.70 0.24 -0.99 16 10 C -0.15 -5.34 9.21 22.52 0.21 -5.13 16 11 C 0.47 22.06 7.25 85.13 0.62 22.68 16 12 O -0.61 -31.58 11.89 19.11 0.23 -31.35 16 13 N -0.44 -21.06 2.45 -645.42 -1.58 -22.64 16 14 C -0.36 -16.52 8.26 84.22 0.70 -15.82 16 15 H 0.11 4.57 6.89 -2.91 -0.02 4.55 16 16 C 0.00 0.10 5.15 85.04 0.44 0.54 16 17 N -0.90 -48.32 11.42 21.72 0.25 -48.07 16 18 Si 0.99 36.89 29.57 68.60 2.03 38.92 16 19 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 20 H -0.29 -11.40 7.11 99.48 0.71 -10.70 16 21 H -0.25 -8.44 7.11 99.48 0.71 -7.74 16 22 C 0.13 6.62 4.30 86.38 0.37 6.99 16 23 C -0.11 -4.40 6.14 29.85 0.18 -4.22 16 24 C 0.49 18.07 8.33 71.24 0.59 18.66 16 25 O -0.55 -24.37 16.74 21.98 0.37 -24.00 16 26 O -0.51 -13.49 13.42 -51.40 -0.69 -14.18 16 27 O -0.13 -5.83 7.82 15.28 0.12 -5.71 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.18 4.49 8.06 -2.91 -0.02 4.47 16 32 H 0.20 3.47 8.06 -2.91 -0.02 3.45 16 33 H 0.21 3.33 8.06 -2.91 -0.02 3.31 16 34 H 0.16 5.03 6.48 -2.91 -0.02 5.02 16 35 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 36 H 0.09 4.69 5.71 -2.39 -0.01 4.68 16 37 H 0.03 1.62 7.32 -2.39 -0.02 1.61 16 38 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 39 H 0.12 4.29 8.14 -2.38 -0.02 4.27 16 40 H 0.43 7.09 9.10 -74.05 -0.67 6.42 16 Total: -1.00 -77.84 362.10 6.78 -71.05 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: 0.44 Total: 33.52 kcal Atomic # 6 Polarization: 31.20 SS G_CDS: 5.90 Total: 37.10 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -1.33 Total: -70.71 kcal Atomic # 8 Polarization: -109.63 SS G_CDS: -0.25 Total: -109.88 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Total: -77.84 6.78 -71.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598974628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.727 kcal (2) G-P(sol) polarization free energy of solvation -77.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds