Wall clock time and date at job start Tue Mar 31 2020 20:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99676 * 2 1 4 4 H 1.08998 * 109.47390 * 32.80173 * 3 2 1 5 5 C 1.52999 * 109.47205 * 272.79460 * 3 2 1 6 6 S 1.81394 * 109.47444 * 298.03245 * 5 3 2 7 7 O 1.42101 * 110.54254 * 62.85700 * 6 5 3 8 8 O 1.42098 * 110.54220 * 286.10900 * 6 5 3 9 9 N 1.65599 * 104.45037 * 174.48460 * 6 5 3 10 10 C 1.36934 * 120.00339 * 90.00357 * 9 6 5 11 11 H 1.07995 * 119.99855 * 27.26723 * 10 9 6 12 12 C 1.38814 * 119.99928 * 207.27787 * 10 9 6 13 13 N 1.31615 * 120.00341 * 41.27530 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 221.28163 * 12 10 9 15 15 H 1.48501 * 109.46909 * 269.99946 * 14 12 10 16 16 H 1.48498 * 109.47373 * 149.99797 * 14 12 10 17 17 H 1.48501 * 109.46983 * 29.99527 * 14 12 10 18 18 C 1.46503 * 119.99843 * 269.99837 * 9 6 5 19 19 C 1.50707 * 109.47188 * 263.26587 * 18 9 6 20 20 O 1.20824 * 119.99659 * 359.97438 * 19 18 9 21 21 O 1.34227 * 119.99712 * 180.02562 * 19 18 9 22 22 C 1.53005 * 109.47140 * 152.79634 * 3 2 1 23 23 H 1.09004 * 110.80027 * 63.62837 * 22 3 2 24 24 C 1.54808 * 110.90440 * 300.00158 * 22 3 2 25 25 C 1.54102 * 104.18694 * 220.91499 * 24 22 3 26 26 O 1.43748 * 107.29326 * 357.97468 * 25 24 22 27 27 C 1.44382 * 106.97663 * 26.50876 * 26 25 24 28 28 H 1.08996 * 109.47086 * 64.88327 * 1 2 3 29 29 H 1.08997 * 109.46969 * 184.88917 * 1 2 3 30 30 H 1.09004 * 109.46559 * 304.88401 * 1 2 3 31 31 H 1.09001 * 109.47016 * 178.03099 * 5 3 2 32 32 H 1.09007 * 109.47036 * 58.03628 * 5 3 2 33 33 H 0.97001 * 120.00130 * 5.92605 * 13 12 10 34 34 H 1.09000 * 109.47127 * 23.26356 * 18 9 6 35 35 H 1.09004 * 109.47041 * 143.26642 * 18 9 6 36 36 H 0.96699 * 116.99754 * 179.97438 * 21 19 18 37 37 H 1.08991 * 110.49267 * 339.59611 * 24 22 3 38 38 H 1.09002 * 110.48507 * 102.24441 * 24 22 3 39 39 H 1.09002 * 109.87472 * 117.39350 * 25 24 22 40 40 H 1.08994 * 109.88122 * 238.39910 * 25 24 22 41 41 H 1.08993 * 110.61927 * 201.43789 * 27 26 25 42 42 H 1.09005 * 110.61555 * 78.43570 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3689 1.9888 0.5567 5 6 2.1534 1.8000 -1.4408 6 16 3.2673 0.6954 -2.3514 7 8 2.7210 -0.6144 -2.4241 8 8 4.6146 0.9061 -1.9521 9 7 3.2126 1.2478 -3.9116 10 6 4.0977 2.2050 -4.3305 11 1 5.0641 2.2914 -3.8562 12 6 3.7527 3.0644 -5.3646 13 7 2.5392 3.5707 -5.4225 14 14 5.0108 3.5021 -6.6742 15 1 5.7636 4.7109 -6.2530 16 1 4.3152 3.7744 -7.9576 17 1 5.9539 2.3690 -6.8530 18 6 2.2172 0.7124 -4.8438 19 6 2.8418 -0.3805 -5.6724 20 8 3.9996 -0.6809 -5.5021 21 8 2.1120 -1.0194 -6.6003 22 6 3.3897 1.2497 0.6595 23 1 4.0690 0.6214 0.0833 24 6 3.2833 0.7523 2.1216 25 6 4.2676 1.6484 2.8980 26 8 4.8950 2.5212 1.9434 27 6 3.9734 2.6738 0.8425 28 1 -0.3633 0.4362 -0.9305 29 1 -0.3633 -1.0239 0.0876 30 1 -0.3632 0.5878 0.8431 31 1 2.5642 2.8097 -1.4392 32 1 1.1751 1.8066 -1.9216 33 1 1.9129 3.4132 -4.6987 34 1 1.3752 0.3069 -4.2828 35 1 1.8670 1.5101 -5.4990 36 1 2.5561 -1.7128 -7.1072 37 1 2.2687 0.8855 2.4970 38 1 3.5828 -0.2934 2.1916 39 1 3.7272 2.2372 3.6392 40 1 5.0199 1.0326 3.3907 41 1 4.4998 2.9915 -0.0575 42 1 3.1848 3.3819 1.0974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599058808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:41 Heat of formation + Delta-G solvation = -236.950720 kcal Electronic energy + Delta-G solvation = -29857.032445 eV Core-core repulsion = 25544.477289 eV Total energy + Delta-G solvation = -4312.555156 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.117 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.67410 -39.51216 -37.74641 -36.31532 -35.75709 -35.17528 -34.55649 -33.18825 -31.83120 -30.56047 -28.11460 -27.87893 -26.73485 -24.22507 -23.40147 -22.06091 -21.16427 -20.54257 -18.99438 -17.56931 -17.40018 -17.23167 -16.47647 -16.27097 -16.18631 -15.87370 -15.31600 -14.94704 -14.90099 -14.76385 -14.49562 -14.28512 -14.00917 -13.73370 -13.40979 -13.12798 -12.61905 -12.37178 -12.30947 -12.12244 -11.79184 -11.52742 -11.39674 -11.20555 -11.15073 -11.02045 -10.89471 -10.83525 -10.77344 -10.67989 -10.46800 -10.36550 -10.25409 -9.99219 -9.68066 -9.61260 -9.46855 -9.25874 -8.39640 -7.19526 -4.19337 1.39668 2.96052 3.11780 3.23922 3.46926 3.55597 3.70158 3.90867 3.98862 4.16388 4.42115 4.57836 4.76719 4.96727 4.99385 5.10662 5.13135 5.21486 5.32926 5.36886 5.38879 5.47965 5.52319 5.60042 5.72329 5.73588 5.81628 5.84688 5.92619 5.98091 6.04420 6.10387 6.19143 6.29028 6.66306 6.92526 7.08109 7.21402 7.59690 7.83028 8.53731 8.61681 8.71189 9.98635 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.004951 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.781217 B = 5653.950385 C = 6673.666266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.122 3.878 4 H 0.066 0.934 5 C -0.695 4.695 6 S 2.475 3.525 7 O -0.986 6.986 8 O -0.969 6.969 9 N -0.801 5.801 10 C -0.320 4.320 11 H 0.113 0.887 12 C 0.015 3.985 13 N -0.813 5.813 14 Si 1.060 2.940 15 H -0.275 1.275 16 H -0.274 1.274 17 H -0.273 1.273 18 C 0.129 3.871 19 C 0.466 3.534 20 O -0.492 6.492 21 O -0.527 6.527 22 C -0.145 4.145 23 H 0.107 0.893 24 C -0.142 4.142 25 C 0.044 3.956 26 O -0.373 6.373 27 C 0.059 3.941 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.283 0.717 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.400 0.600 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.057 -0.994 6.425 8.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.291 6.291 3 C 0.062 3.938 4 H 0.084 0.916 5 C -0.812 4.812 6 S 2.578 3.422 7 O -0.975 6.975 8 O -0.959 6.959 9 N -0.623 5.623 10 C -0.470 4.470 11 H 0.131 0.869 12 C -0.202 4.202 13 N -0.446 5.446 14 Si 0.883 3.117 15 H -0.201 1.201 16 H -0.199 1.199 17 H -0.198 1.198 18 C -0.001 4.001 19 C 0.304 3.696 20 O -0.377 6.377 21 O -0.339 6.339 22 C -0.164 4.164 23 H 0.125 0.875 24 C -0.180 4.180 25 C -0.032 4.032 26 O -0.291 6.291 27 C -0.017 4.017 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.142 0.858 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.137 0.863 36 H 0.257 0.743 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.126 0.874 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.079 -0.896 5.996 7.909 hybrid contribution -1.082 -0.552 1.244 1.739 sum -6.161 -1.447 7.241 9.617 Atomic orbital electron populations 1.22773 0.81140 1.02692 0.99775 1.88031 1.19719 1.26529 1.94813 1.21544 0.93852 0.85200 0.93162 0.91640 1.31592 1.20091 1.20224 1.09327 1.14146 0.76429 0.77693 0.73939 1.93356 1.80765 1.38295 1.85107 1.93363 1.33568 1.86919 1.82042 1.53799 1.39114 1.49840 1.19509 1.20637 0.95627 1.12083 1.18683 0.86909 1.26825 1.00354 0.91993 1.01068 1.70892 1.07370 1.30964 1.35351 0.83665 0.75135 0.77381 0.75477 1.20110 1.19928 1.19795 1.20571 0.91263 0.94379 0.93875 1.24251 0.85460 0.81820 0.78035 1.90677 1.18152 1.63071 1.65821 1.84542 1.48367 1.51248 1.49716 1.23202 0.96349 0.99404 0.97441 0.87539 1.22873 1.00088 1.01060 0.93958 1.23182 0.95950 0.91978 0.92138 1.88889 1.41288 1.67557 1.31403 1.23554 0.92812 0.94425 0.90931 0.93957 0.89453 0.94342 0.85835 0.87160 0.90614 0.87901 0.86273 0.74261 0.90684 0.89971 0.92619 0.89851 0.87374 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.85 101.05 1.10 1.53 16 2 O -0.37 -6.49 9.00 -45.68 -0.41 -6.90 16 3 C 0.12 2.02 1.81 -26.73 -0.05 1.97 16 4 H 0.07 0.91 7.70 -51.93 -0.40 0.51 16 5 C -0.70 -12.69 5.88 37.16 0.22 -12.47 16 6 S 2.48 57.45 4.51 -107.50 -0.49 56.97 16 7 O -0.99 -24.84 16.09 -62.90 -1.01 -25.85 16 8 O -0.97 -25.10 14.75 -57.54 -0.85 -25.95 16 9 N -0.80 -18.70 2.26 -61.08 -0.14 -18.84 16 10 C -0.32 -7.83 8.77 -15.06 -0.13 -7.96 16 11 H 0.11 2.91 7.34 -52.49 -0.39 2.52 16 12 C 0.01 0.34 4.55 -17.43 -0.08 0.26 16 13 N -0.81 -18.67 12.15 55.49 0.67 -18.00 16 14 Si 1.06 21.22 30.06 -169.99 -5.11 16.12 16 15 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 16 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 17 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 18 C 0.13 2.70 5.33 -5.19 -0.03 2.68 16 19 C 0.47 9.95 8.35 36.01 0.30 10.25 16 20 O -0.49 -12.23 17.04 -18.75 -0.32 -12.55 16 21 O -0.53 -8.73 13.42 -39.25 -0.53 -9.26 16 22 C -0.15 -2.50 2.44 -88.61 -0.22 -2.72 16 23 H 0.11 2.20 5.53 -51.93 -0.29 1.91 16 24 C -0.14 -1.97 6.31 -25.20 -0.16 -2.13 16 25 C 0.04 0.58 7.70 37.73 0.29 0.87 16 26 O -0.37 -6.22 11.52 -35.23 -0.41 -6.62 16 27 C 0.06 0.97 6.42 38.21 0.25 1.21 16 28 H 0.04 0.54 7.72 -51.93 -0.40 0.14 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.04 0.41 7.97 -51.93 -0.41 -0.01 16 31 H 0.12 2.14 7.58 -51.92 -0.39 1.75 16 32 H 0.11 1.82 7.71 -51.92 -0.40 1.42 16 33 H 0.28 6.29 8.01 -40.82 -0.33 5.97 16 34 H 0.10 1.90 7.54 -51.93 -0.39 1.51 16 35 H 0.12 2.44 5.54 -51.93 -0.29 2.15 16 36 H 0.40 4.70 9.10 45.56 0.41 5.12 16 37 H 0.07 0.90 7.86 -51.93 -0.41 0.49 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.11 1.89 8.12 -51.93 -0.42 1.47 16 42 H 0.06 0.82 8.01 -51.93 -0.42 0.41 16 LS Contribution 358.83 15.07 5.41 5.41 Total: -1.00 -32.95 358.83 -6.69 -39.64 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -5.00 Total: 12.35 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 1.49 Total: -6.51 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.54 Total: -36.83 kcal Atomic # 8 Polarization: -83.61 SS G_CDS: -3.52 Total: -87.14 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.11 Total: 16.12 kcal Atomic # 16 Polarization: 57.45 SS G_CDS: -0.49 Total: 56.97 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.95 -6.69 -39.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599058808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.311 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds