Wall clock time and date at job start Tue Mar 31 2020 20:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99676 * 2 1 4 4 H 1.08998 * 109.47390 * 32.80173 * 3 2 1 5 5 C 1.52999 * 109.47205 * 272.79460 * 3 2 1 6 6 S 1.81394 * 109.47444 * 298.03245 * 5 3 2 7 7 O 1.42101 * 110.54254 * 62.85700 * 6 5 3 8 8 O 1.42098 * 110.54220 * 286.10900 * 6 5 3 9 9 N 1.65599 * 104.45037 * 174.48460 * 6 5 3 10 10 C 1.36934 * 120.00339 * 90.00357 * 9 6 5 11 11 H 1.07995 * 119.99855 * 27.26723 * 10 9 6 12 12 C 1.38814 * 119.99928 * 207.27787 * 10 9 6 13 13 N 1.31615 * 120.00341 * 41.27530 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 221.28163 * 12 10 9 15 15 H 1.48501 * 109.46909 * 269.99946 * 14 12 10 16 16 H 1.48498 * 109.47373 * 149.99797 * 14 12 10 17 17 H 1.48501 * 109.46983 * 29.99527 * 14 12 10 18 18 C 1.46503 * 119.99843 * 269.99837 * 9 6 5 19 19 C 1.50707 * 109.47188 * 263.26587 * 18 9 6 20 20 O 1.20824 * 119.99659 * 359.97438 * 19 18 9 21 21 O 1.34227 * 119.99712 * 180.02562 * 19 18 9 22 22 C 1.53005 * 109.47140 * 152.79634 * 3 2 1 23 23 H 1.09004 * 110.80027 * 63.62837 * 22 3 2 24 24 C 1.54808 * 110.90440 * 300.00158 * 22 3 2 25 25 C 1.54102 * 104.18694 * 220.91499 * 24 22 3 26 26 O 1.43748 * 107.29326 * 357.97468 * 25 24 22 27 27 C 1.44382 * 106.97663 * 26.50876 * 26 25 24 28 28 H 1.08996 * 109.47086 * 64.88327 * 1 2 3 29 29 H 1.08997 * 109.46969 * 184.88917 * 1 2 3 30 30 H 1.09004 * 109.46559 * 304.88401 * 1 2 3 31 31 H 1.09001 * 109.47016 * 178.03099 * 5 3 2 32 32 H 1.09007 * 109.47036 * 58.03628 * 5 3 2 33 33 H 0.97001 * 120.00130 * 5.92605 * 13 12 10 34 34 H 1.09000 * 109.47127 * 23.26356 * 18 9 6 35 35 H 1.09004 * 109.47041 * 143.26642 * 18 9 6 36 36 H 0.96699 * 116.99754 * 179.97438 * 21 19 18 37 37 H 1.08991 * 110.49267 * 339.59611 * 24 22 3 38 38 H 1.09002 * 110.48507 * 102.24441 * 24 22 3 39 39 H 1.09002 * 109.87472 * 117.39350 * 25 24 22 40 40 H 1.08994 * 109.88122 * 238.39910 * 25 24 22 41 41 H 1.08993 * 110.61927 * 201.43789 * 27 26 25 42 42 H 1.09005 * 110.61555 * 78.43570 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3689 1.9888 0.5567 5 6 2.1534 1.8000 -1.4408 6 16 3.2673 0.6954 -2.3514 7 8 2.7210 -0.6144 -2.4241 8 8 4.6146 0.9061 -1.9521 9 7 3.2126 1.2478 -3.9116 10 6 4.0977 2.2050 -4.3305 11 1 5.0641 2.2914 -3.8562 12 6 3.7527 3.0644 -5.3646 13 7 2.5392 3.5707 -5.4225 14 14 5.0108 3.5021 -6.6742 15 1 5.7636 4.7109 -6.2530 16 1 4.3152 3.7744 -7.9576 17 1 5.9539 2.3690 -6.8530 18 6 2.2172 0.7124 -4.8438 19 6 2.8418 -0.3805 -5.6724 20 8 3.9996 -0.6809 -5.5021 21 8 2.1120 -1.0194 -6.6003 22 6 3.3897 1.2497 0.6595 23 1 4.0690 0.6214 0.0833 24 6 3.2833 0.7523 2.1216 25 6 4.2676 1.6484 2.8980 26 8 4.8950 2.5212 1.9434 27 6 3.9734 2.6738 0.8425 28 1 -0.3633 0.4362 -0.9305 29 1 -0.3633 -1.0239 0.0876 30 1 -0.3632 0.5878 0.8431 31 1 2.5642 2.8097 -1.4392 32 1 1.1751 1.8066 -1.9216 33 1 1.9129 3.4132 -4.6987 34 1 1.3752 0.3069 -4.2828 35 1 1.8670 1.5101 -5.4990 36 1 2.5561 -1.7128 -7.1072 37 1 2.2687 0.8855 2.4970 38 1 3.5828 -0.2934 2.1916 39 1 3.7272 2.2372 3.6392 40 1 5.0199 1.0326 3.3907 41 1 4.4998 2.9915 -0.0575 42 1 3.1848 3.3819 1.0974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599058808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:40 Heat of formation + Delta-G solvation = -263.296915 kcal Electronic energy + Delta-G solvation = -29858.174902 eV Core-core repulsion = 25544.477289 eV Total energy + Delta-G solvation = -4313.697612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.117 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.17513 -40.86657 -38.96593 -37.95684 -37.74315 -36.82768 -36.54557 -34.46424 -33.55095 -31.78155 -29.59414 -29.36632 -27.80064 -25.95643 -24.68491 -23.22278 -22.78290 -21.81138 -20.75992 -19.29540 -19.07565 -18.76534 -17.95967 -17.76864 -17.53229 -17.27199 -16.88579 -16.50881 -16.35065 -16.05741 -15.95026 -15.68865 -15.55972 -15.40467 -14.64394 -14.43085 -14.12569 -14.01709 -13.69192 -13.54534 -13.32360 -12.93090 -12.79176 -12.74514 -12.65259 -12.59767 -12.56032 -12.44480 -12.25389 -12.12022 -11.99537 -11.97159 -11.78556 -11.71027 -11.19745 -10.98649 -10.78510 -10.72652 -10.11054 -8.95674 -6.02098 -0.39531 1.28527 1.49689 1.60441 1.85979 1.93748 2.29905 2.48057 2.54204 2.69025 2.83023 3.24887 3.38889 3.42790 3.63435 3.77371 3.87302 3.93757 4.04508 4.09156 4.21727 4.26612 4.31507 4.37137 4.45431 4.48384 4.53027 4.66784 4.72207 4.74601 4.78505 4.84011 4.98341 5.00268 5.06705 5.63670 5.80627 5.85712 6.01916 6.07244 6.83426 6.91924 7.09188 8.25826 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014083 B = 0.004951 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.781217 B = 5653.950385 C = 6673.666266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.400 6.400 3 C 0.121 3.879 4 H 0.111 0.889 5 C -0.674 4.674 6 S 2.502 3.498 7 O -1.007 7.007 8 O -1.005 7.005 9 N -0.820 5.820 10 C -0.366 4.366 11 H 0.080 0.920 12 C 0.001 3.999 13 N -0.824 5.824 14 Si 1.088 2.912 15 H -0.261 1.261 16 H -0.263 1.263 17 H -0.290 1.290 18 C 0.121 3.879 19 C 0.466 3.534 20 O -0.538 6.538 21 O -0.509 6.509 22 C -0.158 4.158 23 H 0.061 0.939 24 C -0.136 4.136 25 C 0.039 3.961 26 O -0.399 6.399 27 C 0.059 3.941 28 H 0.045 0.955 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.283 0.717 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.423 0.577 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.773 -0.417 8.115 11.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.319 6.319 3 C 0.062 3.938 4 H 0.129 0.871 5 C -0.799 4.799 6 S 2.609 3.391 7 O -0.997 6.997 8 O -0.995 6.995 9 N -0.644 5.644 10 C -0.511 4.511 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.456 5.456 14 Si 0.909 3.091 15 H -0.185 1.185 16 H -0.187 1.187 17 H -0.217 1.217 18 C -0.009 4.009 19 C 0.306 3.694 20 O -0.427 6.427 21 O -0.322 6.322 22 C -0.177 4.177 23 H 0.079 0.921 24 C -0.173 4.173 25 C -0.037 4.037 26 O -0.319 6.319 27 C -0.018 4.018 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.093 0.907 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.284 0.716 37 H 0.122 0.878 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.767 -0.316 7.560 10.843 hybrid contribution -0.380 -0.926 0.936 1.371 sum -8.147 -1.243 8.496 11.837 Atomic orbital electron populations 1.23103 0.78959 1.04296 1.01359 1.88026 1.22245 1.26811 1.94847 1.21664 0.94385 0.86122 0.91614 0.87096 1.31287 1.19316 1.18792 1.10537 1.11645 0.76133 0.77218 0.74136 1.93344 1.81082 1.39488 1.85834 1.93351 1.36039 1.87394 1.82719 1.53308 1.40663 1.50264 1.20133 1.20226 0.95684 1.13664 1.21555 0.90244 1.27406 1.01190 0.91554 1.01178 1.70924 1.07592 1.31448 1.35639 0.83302 0.73982 0.77105 0.74759 1.18531 1.18676 1.21651 1.20821 0.91425 0.94473 0.94133 1.24434 0.84926 0.81755 0.78271 1.90663 1.20026 1.64587 1.67395 1.84476 1.47454 1.51564 1.48682 1.23214 0.95943 0.99400 0.99183 0.92051 1.22888 1.01937 1.00856 0.91644 1.23435 0.96392 0.92031 0.91814 1.88854 1.42476 1.68422 1.32110 1.23562 0.93264 0.94628 0.90313 0.93668 0.88397 0.91092 0.84473 0.84393 0.90677 0.85545 0.85689 0.71602 0.87832 0.90424 0.89500 0.88880 0.90018 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.85 113.37 1.23 1.64 16 2 O -0.40 -12.71 9.00 -138.99 -1.25 -13.96 16 3 C 0.12 3.63 1.81 30.60 0.06 3.69 16 4 H 0.11 2.42 7.70 -2.39 -0.02 2.41 16 5 C -0.67 -23.10 5.88 71.98 0.42 -22.68 16 6 S 2.50 117.39 4.51 -56.49 -0.25 117.14 16 7 O -1.01 -50.89 16.09 -122.53 -1.97 -52.86 16 8 O -1.00 -54.52 14.75 -127.65 -1.88 -56.40 16 9 N -0.82 -39.11 2.26 -347.16 -0.78 -39.90 16 10 C -0.37 -18.72 8.77 84.03 0.74 -17.98 16 11 H 0.08 4.44 7.34 -2.91 -0.02 4.42 16 12 C 0.00 0.05 4.55 84.86 0.39 0.44 16 13 N -0.82 -37.85 12.15 21.65 0.26 -37.58 16 14 Si 1.09 43.81 30.06 68.60 2.06 45.87 16 15 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 16 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 17 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 18 C 0.12 5.05 5.33 85.63 0.46 5.50 16 19 C 0.47 19.98 8.35 71.24 0.60 20.58 16 20 O -0.54 -27.54 17.04 21.97 0.37 -27.17 16 21 O -0.51 -16.22 13.42 -51.39 -0.69 -16.91 16 22 C -0.16 -5.22 2.44 -9.49 -0.02 -5.24 16 23 H 0.06 2.59 5.53 -2.38 -0.01 2.57 16 24 C -0.14 -3.38 6.31 31.58 0.20 -3.18 16 25 C 0.04 0.92 7.70 72.35 0.56 1.48 16 26 O -0.40 -12.83 11.52 -148.98 -1.72 -14.54 16 27 C 0.06 1.84 6.42 72.66 0.47 2.30 16 28 H 0.04 0.96 7.72 -2.39 -0.02 0.95 16 29 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 1.11 7.97 -2.38 -0.02 1.09 16 31 H 0.14 4.48 7.58 -2.39 -0.02 4.46 16 32 H 0.14 4.05 7.71 -2.39 -0.02 4.03 16 33 H 0.28 12.50 8.01 -92.71 -0.74 11.76 16 34 H 0.13 4.52 7.54 -2.39 -0.02 4.50 16 35 H 0.13 5.10 5.54 -2.38 -0.01 5.09 16 36 H 0.42 9.32 9.10 -74.06 -0.67 8.64 16 37 H 0.10 1.98 7.86 -2.39 -0.02 1.96 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 39 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 2.92 8.12 -2.39 -0.02 2.90 16 42 H 0.09 2.25 8.01 -2.38 -0.02 2.23 16 Total: -1.00 -75.07 358.83 -0.36 -75.43 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: 0.41 Total: 34.34 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 5.08 Total: -13.46 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -0.52 Total: -77.48 kcal Atomic # 8 Polarization: -174.71 SS G_CDS: -7.14 Total: -181.85 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.06 Total: 45.87 kcal Atomic # 16 Polarization: 117.39 SS G_CDS: -0.25 Total: 117.14 kcal Total: -75.07 -0.36 -75.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599058808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.869 kcal (2) G-P(sol) polarization free energy of solvation -75.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -263.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds