Wall clock time and date at job start Tue Mar 31 2020 20:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99856 * 2 1 4 4 H 1.08995 * 109.46959 * 30.00037 * 3 2 1 5 5 C 1.53001 * 109.46698 * 150.00226 * 3 2 1 6 6 S 1.81402 * 109.47243 * 299.99595 * 5 3 2 7 7 O 1.42102 * 110.54330 * 291.63393 * 6 5 3 8 8 O 1.42102 * 110.54013 * 68.37986 * 6 5 3 9 9 N 1.65598 * 104.45344 * 180.02562 * 6 5 3 10 10 C 1.36939 * 119.99955 * 89.99986 * 9 6 5 11 11 H 1.08004 * 119.99877 * 326.59827 * 10 9 6 12 12 C 1.38810 * 120.00050 * 146.60208 * 10 9 6 13 13 N 1.31622 * 119.99823 * 336.15612 * 12 10 9 14 14 Si 1.86795 * 120.00213 * 156.16044 * 12 10 9 15 15 H 1.48503 * 109.47262 * 89.99723 * 14 12 10 16 16 H 1.48497 * 109.47255 * 210.00054 * 14 12 10 17 17 H 1.48505 * 109.46945 * 329.99629 * 14 12 10 18 18 C 1.46492 * 119.99942 * 270.00440 * 9 6 5 19 19 C 1.50701 * 109.47290 * 96.17944 * 18 9 6 20 20 O 1.20820 * 119.99929 * 359.97438 * 19 18 9 21 21 O 1.34235 * 120.00031 * 179.97438 * 19 18 9 22 22 C 1.53000 * 109.46958 * 269.99967 * 3 2 1 23 23 H 1.09000 * 110.90725 * 296.41090 * 22 3 2 24 24 C 1.55294 * 110.84940 * 60.00190 * 22 3 2 25 25 C 1.54951 * 100.98446 * 152.30260 * 24 22 3 26 26 O 1.43698 * 105.10679 * 323.61464 * 25 24 22 27 27 C 1.43241 * 109.99443 * 24.35918 * 26 25 24 28 28 H 1.08999 * 109.47281 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47171 * 299.99951 * 1 2 3 30 30 H 1.09008 * 109.47138 * 60.00102 * 1 2 3 31 31 H 1.08995 * 109.47569 * 60.00185 * 5 3 2 32 32 H 1.09004 * 109.46677 * 180.02562 * 5 3 2 33 33 H 0.96994 * 119.99888 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.47497 * 216.17743 * 18 9 6 35 35 H 1.08996 * 109.47473 * 336.17993 * 18 9 6 36 36 H 0.96703 * 116.99524 * 179.97438 * 21 19 18 37 37 H 1.09004 * 111.12667 * 270.23930 * 24 22 3 38 38 H 1.09002 * 111.12799 * 34.35836 * 24 22 3 39 39 H 1.09000 * 110.31065 * 82.48549 * 25 24 22 40 40 H 1.08996 * 110.30972 * 204.66273 * 25 24 22 41 41 H 1.08997 * 109.82912 * 238.81544 * 27 26 25 42 42 H 1.09002 * 109.82571 * 117.84036 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3588 1.2632 0.7212 6 16 3.1129 0.7109 2.4315 7 8 2.4090 1.6948 3.1770 8 8 2.7176 -0.6537 2.4628 9 7 4.6330 0.7113 3.0886 10 6 5.1132 1.8373 3.7025 11 1 4.8269 2.8136 3.3403 12 6 5.9679 1.7237 4.7903 13 7 5.9593 0.6301 5.5227 14 14 7.1303 3.1230 5.2149 15 1 6.4592 4.0559 6.1554 16 1 8.3543 2.5738 5.8515 17 1 7.5014 3.8516 3.9753 18 6 5.4640 -0.4927 3.0130 19 6 6.3929 -0.3886 1.8309 20 8 6.3634 0.5906 1.1238 21 8 7.2530 -1.3839 1.5636 22 6 2.2176 1.7714 -1.4425 23 1 2.9298 1.1288 -1.9602 24 6 0.8661 1.8259 -2.2055 25 6 1.1628 2.9283 -3.2532 26 8 1.9930 3.8812 -2.5694 27 6 2.6766 3.2448 -1.4833 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8901 31 1 4.0241 0.5694 0.2074 32 1 3.8020 2.2591 0.7216 33 1 6.5568 0.5506 6.2826 34 1 6.0492 -0.5884 3.9276 35 1 4.8253 -1.3683 2.8972 36 1 7.8286 -1.2720 0.7945 37 1 0.6489 0.8732 -2.6885 38 1 0.0526 2.1221 -1.5431 39 1 1.6950 2.5065 -4.1058 40 1 0.2356 3.3989 -3.5801 41 1 2.4205 3.7380 -0.5456 42 1 3.7534 3.2923 -1.6456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599058810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:45 Heat of formation + Delta-G solvation = -232.526195 kcal Electronic energy + Delta-G solvation = -29556.654473 eV Core-core repulsion = 25244.291179 eV Total energy + Delta-G solvation = -4312.363294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.117 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.02152 -39.45616 -37.86951 -36.12288 -35.92371 -35.05508 -34.82890 -33.31717 -31.46215 -31.17193 -28.60844 -27.66246 -26.57199 -24.28567 -23.74254 -22.31214 -21.07762 -20.72798 -18.56016 -17.51467 -17.44841 -17.38710 -16.78152 -16.49340 -16.05945 -15.72849 -15.36846 -15.05469 -14.97714 -14.82667 -14.67231 -14.55168 -14.30581 -13.54209 -13.44074 -13.14594 -12.62491 -12.55638 -12.26992 -12.03926 -11.86992 -11.56106 -11.53463 -11.38232 -11.22501 -11.11331 -11.00588 -10.96621 -10.95382 -10.86976 -10.77402 -10.56295 -10.30757 -10.20767 -9.88026 -9.66567 -9.58343 -9.14197 -7.89336 -6.34414 -4.03586 1.16294 2.97583 3.18492 3.26718 3.32074 3.50428 3.54895 3.71204 3.97237 4.19501 4.33745 4.45604 4.67573 4.74506 4.83540 4.91740 4.98456 5.02779 5.10209 5.19596 5.28668 5.29654 5.43366 5.49241 5.55420 5.63145 5.67918 5.72944 5.78039 5.97000 6.01294 6.06117 6.12338 6.66714 6.81778 7.02719 7.06112 7.16107 7.57786 8.26907 8.63399 8.88347 9.27368 10.70195 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.004351 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.208344 B = 6434.107578 C = 6653.371992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.373 6.373 3 C 0.111 3.889 4 H 0.076 0.924 5 C -0.634 4.634 6 S 2.588 3.412 7 O -0.956 6.956 8 O -0.971 6.971 9 N -0.828 5.828 10 C -0.295 4.295 11 H 0.094 0.906 12 C 0.038 3.962 13 N -0.866 5.866 14 Si 0.913 3.087 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.269 1.269 18 C 0.116 3.884 19 C 0.453 3.547 20 O -0.516 6.516 21 O -0.526 6.526 22 C -0.133 4.133 23 H 0.097 0.903 24 C -0.157 4.157 25 C 0.051 3.949 26 O -0.385 6.385 27 C 0.054 3.946 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.270 0.730 34 H 0.157 0.843 35 H 0.109 0.891 36 H 0.393 0.607 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.463 -1.070 -13.190 14.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.291 6.291 3 C 0.052 3.948 4 H 0.094 0.906 5 C -0.759 4.759 6 S 2.684 3.316 7 O -0.946 6.946 8 O -0.961 6.961 9 N -0.657 5.657 10 C -0.427 4.427 11 H 0.111 0.889 12 C -0.168 4.168 13 N -0.505 5.505 14 Si 0.739 3.261 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.194 1.194 18 C -0.014 4.014 19 C 0.293 3.707 20 O -0.404 6.404 21 O -0.337 6.337 22 C -0.153 4.153 23 H 0.115 0.885 24 C -0.194 4.194 25 C -0.025 4.025 26 O -0.304 6.304 27 C -0.023 4.023 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.080 0.920 34 H 0.174 0.826 35 H 0.126 0.874 36 H 0.250 0.750 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.380 -1.104 -12.536 14.109 hybrid contribution 1.467 0.910 -0.839 1.920 sum -4.913 -0.194 -13.375 14.250 Atomic orbital electron populations 1.23141 0.80841 1.03627 1.00609 1.88067 1.20038 1.26137 1.94878 1.21666 0.92797 0.85839 0.94527 0.90611 1.30889 1.03210 1.14244 1.27564 1.05955 0.75012 0.74389 0.76266 1.93508 1.71851 1.62829 1.66444 1.93476 1.81984 1.34194 1.86409 1.52451 1.27997 1.18275 1.67012 1.18973 1.28538 0.84870 1.10367 0.88870 1.25244 0.99783 0.97826 0.93898 1.69871 1.36898 1.28224 1.15556 0.86158 0.79893 0.81237 0.78807 1.20096 1.20756 1.19413 1.21076 0.93963 0.89634 0.96683 1.25516 0.79304 0.79355 0.86492 1.90592 1.68494 1.31633 1.49636 1.84649 1.49829 1.48198 1.51017 1.23199 0.97957 0.97537 0.96617 0.88450 1.23506 0.97583 1.00133 0.98216 1.23386 0.94647 0.89618 0.94867 1.88410 1.61504 1.34920 1.45584 1.23221 0.97332 0.91061 0.90642 0.88959 0.93595 0.93023 0.84646 0.83953 0.92021 0.82632 0.87355 0.75001 0.89319 0.90006 0.92149 0.89734 0.90587 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 10.51 101.05 1.06 1.23 16 2 O -0.37 -5.84 9.32 -41.98 -0.39 -6.23 16 3 C 0.11 1.67 1.76 -26.73 -0.05 1.62 16 4 H 0.08 1.08 7.70 -51.93 -0.40 0.68 16 5 C -0.63 -11.03 5.36 37.16 0.20 -10.83 16 6 S 2.59 57.29 5.18 -107.50 -0.56 56.73 16 7 O -0.96 -23.73 17.22 -57.54 -0.99 -24.72 16 8 O -0.97 -22.69 15.86 -61.89 -0.98 -23.67 16 9 N -0.83 -19.84 2.32 -61.09 -0.14 -19.98 16 10 C -0.30 -7.62 8.61 -15.06 -0.13 -7.75 16 11 H 0.09 2.34 7.94 -52.48 -0.42 1.93 16 12 C 0.04 0.98 4.99 -17.43 -0.09 0.89 16 13 N -0.87 -22.67 11.26 55.49 0.63 -22.05 16 14 Si 0.91 20.13 29.62 -169.99 -5.03 15.09 16 15 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 C 0.12 2.57 5.87 -5.20 -0.03 2.54 16 19 C 0.45 8.99 8.36 36.01 0.30 9.29 16 20 O -0.52 -10.91 15.87 -18.75 -0.30 -11.21 16 21 O -0.53 -8.43 13.42 -39.27 -0.53 -8.96 16 22 C -0.13 -1.66 2.75 -88.68 -0.24 -1.90 16 23 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 24 C -0.16 -1.55 4.77 -24.49 -0.12 -1.67 16 25 C 0.05 0.51 7.78 38.19 0.30 0.80 16 26 O -0.38 -5.08 11.36 -35.23 -0.40 -5.48 16 27 C 0.05 0.69 6.60 37.88 0.25 0.94 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.05 0.47 4.77 -51.92 -0.25 0.23 16 31 H 0.14 2.32 7.36 -51.93 -0.38 1.94 16 32 H 0.14 2.33 7.53 -51.92 -0.39 1.94 16 33 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.16 3.70 5.31 -51.93 -0.28 3.42 16 35 H 0.11 2.25 6.80 -51.93 -0.35 1.89 16 36 H 0.39 4.35 9.10 45.56 0.41 4.76 16 37 H 0.09 0.76 7.89 -51.93 -0.41 0.35 16 38 H 0.08 0.76 6.74 -51.93 -0.35 0.41 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.98 7.75 -51.93 -0.40 0.57 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -33.27 356.10 -6.76 -40.03 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.88 Total: 9.91 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 1.45 Total: -4.83 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.48 Total: -42.03 kcal Atomic # 8 Polarization: -76.68 SS G_CDS: -3.59 Total: -80.27 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.09 kcal Atomic # 16 Polarization: 57.29 SS G_CDS: -0.56 Total: 56.73 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.27 -6.76 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599058810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.496 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds