Wall clock time and date at job start Tue Mar 31 2020 20:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99856 * 2 1 4 4 H 1.08995 * 109.46959 * 30.00037 * 3 2 1 5 5 C 1.53001 * 109.46698 * 150.00226 * 3 2 1 6 6 S 1.81402 * 109.47243 * 299.99595 * 5 3 2 7 7 O 1.42102 * 110.54330 * 291.63393 * 6 5 3 8 8 O 1.42102 * 110.54013 * 68.37986 * 6 5 3 9 9 N 1.65598 * 104.45344 * 180.02562 * 6 5 3 10 10 C 1.36939 * 119.99955 * 89.99986 * 9 6 5 11 11 H 1.08004 * 119.99877 * 326.59827 * 10 9 6 12 12 C 1.38810 * 120.00050 * 146.60208 * 10 9 6 13 13 N 1.31622 * 119.99823 * 336.15612 * 12 10 9 14 14 Si 1.86795 * 120.00213 * 156.16044 * 12 10 9 15 15 H 1.48503 * 109.47262 * 89.99723 * 14 12 10 16 16 H 1.48497 * 109.47255 * 210.00054 * 14 12 10 17 17 H 1.48505 * 109.46945 * 329.99629 * 14 12 10 18 18 C 1.46492 * 119.99942 * 270.00440 * 9 6 5 19 19 C 1.50701 * 109.47290 * 96.17944 * 18 9 6 20 20 O 1.20820 * 119.99929 * 359.97438 * 19 18 9 21 21 O 1.34235 * 120.00031 * 179.97438 * 19 18 9 22 22 C 1.53000 * 109.46958 * 269.99967 * 3 2 1 23 23 H 1.09000 * 110.90725 * 296.41090 * 22 3 2 24 24 C 1.55294 * 110.84940 * 60.00190 * 22 3 2 25 25 C 1.54951 * 100.98446 * 152.30260 * 24 22 3 26 26 O 1.43698 * 105.10679 * 323.61464 * 25 24 22 27 27 C 1.43241 * 109.99443 * 24.35918 * 26 25 24 28 28 H 1.08999 * 109.47281 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47171 * 299.99951 * 1 2 3 30 30 H 1.09008 * 109.47138 * 60.00102 * 1 2 3 31 31 H 1.08995 * 109.47569 * 60.00185 * 5 3 2 32 32 H 1.09004 * 109.46677 * 180.02562 * 5 3 2 33 33 H 0.96994 * 119.99888 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.47497 * 216.17743 * 18 9 6 35 35 H 1.08996 * 109.47473 * 336.17993 * 18 9 6 36 36 H 0.96703 * 116.99524 * 179.97438 * 21 19 18 37 37 H 1.09004 * 111.12667 * 270.23930 * 24 22 3 38 38 H 1.09002 * 111.12799 * 34.35836 * 24 22 3 39 39 H 1.09000 * 110.31065 * 82.48549 * 25 24 22 40 40 H 1.08996 * 110.30972 * 204.66273 * 25 24 22 41 41 H 1.08997 * 109.82912 * 238.81544 * 27 26 25 42 42 H 1.09002 * 109.82571 * 117.84036 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3588 1.2632 0.7212 6 16 3.1129 0.7109 2.4315 7 8 2.4090 1.6948 3.1770 8 8 2.7176 -0.6537 2.4628 9 7 4.6330 0.7113 3.0886 10 6 5.1132 1.8373 3.7025 11 1 4.8269 2.8136 3.3403 12 6 5.9679 1.7237 4.7903 13 7 5.9593 0.6301 5.5227 14 14 7.1303 3.1230 5.2149 15 1 6.4592 4.0559 6.1554 16 1 8.3543 2.5738 5.8515 17 1 7.5014 3.8516 3.9753 18 6 5.4640 -0.4927 3.0130 19 6 6.3929 -0.3886 1.8309 20 8 6.3634 0.5906 1.1238 21 8 7.2530 -1.3839 1.5636 22 6 2.2176 1.7714 -1.4425 23 1 2.9298 1.1288 -1.9602 24 6 0.8661 1.8259 -2.2055 25 6 1.1628 2.9283 -3.2532 26 8 1.9930 3.8812 -2.5694 27 6 2.6766 3.2448 -1.4833 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8901 31 1 4.0241 0.5694 0.2074 32 1 3.8020 2.2591 0.7216 33 1 6.5568 0.5506 6.2826 34 1 6.0492 -0.5884 3.9276 35 1 4.8253 -1.3683 2.8972 36 1 7.8286 -1.2720 0.7945 37 1 0.6489 0.8732 -2.6885 38 1 0.0526 2.1221 -1.5431 39 1 1.6950 2.5065 -4.1058 40 1 0.2356 3.3989 -3.5801 41 1 2.4205 3.7380 -0.5456 42 1 3.7534 3.2923 -1.6456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599058810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:44 Heat of formation + Delta-G solvation = -259.026611 kcal Electronic energy + Delta-G solvation = -29557.803617 eV Core-core repulsion = 25244.291179 eV Total energy + Delta-G solvation = -4313.512438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.117 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.00900 -40.98848 -38.91902 -37.94055 -37.58309 -36.77737 -36.54633 -34.41206 -33.35734 -32.16202 -29.61825 -29.41339 -27.60580 -26.11886 -24.87341 -23.17573 -22.61667 -21.79321 -20.36424 -19.17102 -19.00677 -18.52832 -18.35579 -17.84018 -17.18987 -17.07320 -16.79255 -16.67846 -16.43104 -16.24638 -15.94401 -15.88811 -15.49763 -15.19911 -14.45814 -14.18589 -14.08214 -13.93584 -13.62781 -13.34975 -13.18191 -13.13430 -13.04852 -12.95443 -12.80952 -12.58419 -12.52794 -12.47122 -12.34117 -12.22414 -12.05958 -11.94679 -11.89865 -11.74061 -11.44951 -11.02981 -10.63244 -10.55365 -9.74621 -8.25038 -5.99205 -0.53264 1.38461 1.45051 1.47814 1.58785 1.87125 2.38005 2.45516 2.53920 2.82973 2.89897 3.14259 3.27639 3.39055 3.53342 3.75530 3.78097 3.91973 4.19127 4.21411 4.22421 4.30952 4.35572 4.41106 4.50774 4.51760 4.66512 4.73830 4.79365 4.82321 4.85196 4.92388 4.93706 5.09918 5.28294 5.69866 5.73561 5.94616 5.98009 6.37470 6.97703 7.19707 7.35501 8.79525 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.004351 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.208344 B = 6434.107578 C = 6653.371992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.396 6.396 3 C 0.108 3.892 4 H 0.080 0.920 5 C -0.606 4.606 6 S 2.583 3.417 7 O -0.994 6.994 8 O -0.992 6.992 9 N -0.844 5.844 10 C -0.314 4.314 11 H 0.090 0.910 12 C -0.003 4.003 13 N -0.893 5.893 14 Si 0.968 3.032 15 H -0.274 1.274 16 H -0.275 1.275 17 H -0.267 1.267 18 C 0.109 3.891 19 C 0.463 3.537 20 O -0.530 6.530 21 O -0.514 6.514 22 C -0.128 4.128 23 H 0.100 0.900 24 C -0.152 4.152 25 C 0.046 3.954 26 O -0.405 6.405 27 C 0.051 3.949 28 H 0.105 0.895 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.272 0.728 34 H 0.140 0.860 35 H 0.114 0.886 36 H 0.420 0.580 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 -0.875 -15.397 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.315 6.315 3 C 0.048 3.952 4 H 0.098 0.902 5 C -0.737 4.737 6 S 2.684 3.316 7 O -0.984 6.984 8 O -0.982 6.982 9 N -0.673 5.673 10 C -0.446 4.446 11 H 0.108 0.892 12 C -0.206 4.206 13 N -0.533 5.533 14 Si 0.792 3.208 15 H -0.200 1.200 16 H -0.200 1.200 17 H -0.191 1.191 18 C -0.020 4.020 19 C 0.304 3.696 20 O -0.419 6.419 21 O -0.327 6.327 22 C -0.148 4.148 23 H 0.119 0.881 24 C -0.189 4.189 25 C -0.029 4.029 26 O -0.325 6.325 27 C -0.026 4.026 28 H 0.124 0.876 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.161 0.839 32 H 0.171 0.829 33 H 0.082 0.918 34 H 0.157 0.843 35 H 0.131 0.869 36 H 0.281 0.719 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.335 -0.948 -14.702 16.037 hybrid contribution 1.410 0.764 -0.260 1.624 sum -4.926 -0.184 -14.963 15.753 Atomic orbital electron populations 1.23440 0.79044 1.05035 1.01897 1.88028 1.22108 1.26264 1.95108 1.21758 0.91261 0.86142 0.96025 0.90227 1.30593 1.05474 1.14671 1.22926 1.05769 0.74233 0.73662 0.77911 1.93454 1.72689 1.63343 1.68948 1.93438 1.82149 1.35081 1.87520 1.52478 1.28599 1.18200 1.68027 1.19164 1.29153 0.85449 1.10826 0.89193 1.25977 1.00831 0.99973 0.93836 1.69958 1.37605 1.29721 1.16059 0.85322 0.78218 0.78747 0.78512 1.19990 1.20037 1.19129 1.20963 0.94444 0.89342 0.97259 1.24773 0.79512 0.79645 0.85700 1.90582 1.69051 1.32267 1.49992 1.84548 1.49415 1.46354 1.52376 1.23116 0.99817 0.97058 0.94853 0.88139 1.23537 0.96148 1.01201 0.98031 1.23612 0.95213 0.89274 0.94831 1.88390 1.62081 1.36225 1.45773 1.23219 0.97433 0.91302 0.90627 0.87641 0.94161 0.89922 0.83912 0.82877 0.91808 0.84318 0.86852 0.71895 0.87419 0.89356 0.91000 0.87797 0.91131 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 10.51 113.37 1.19 1.22 16 2 O -0.40 -11.81 9.32 -142.53 -1.33 -13.14 16 3 C 0.11 3.08 1.76 30.59 0.05 3.14 16 4 H 0.08 2.20 7.70 -2.39 -0.02 2.18 16 5 C -0.61 -20.67 5.36 71.98 0.39 -20.28 16 6 S 2.58 116.15 5.18 -56.49 -0.29 115.86 16 7 O -0.99 -50.74 17.22 -127.65 -2.20 -52.94 16 8 O -0.99 -47.15 15.86 -123.49 -1.96 -49.11 16 9 N -0.84 -41.12 2.32 -347.19 -0.80 -41.92 16 10 C -0.31 -16.46 8.61 84.03 0.72 -15.74 16 11 H 0.09 4.63 7.94 -2.91 -0.02 4.60 16 12 C 0.00 -0.16 4.99 84.86 0.42 0.26 16 13 N -0.89 -47.61 11.26 21.65 0.24 -47.37 16 14 Si 0.97 41.34 29.62 68.60 2.03 43.37 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 16 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 17 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 18 C 0.11 4.89 5.87 85.63 0.50 5.39 16 19 C 0.46 17.97 8.36 71.24 0.60 18.56 16 20 O -0.53 -21.79 15.87 21.98 0.35 -21.44 16 21 O -0.51 -15.42 13.42 -51.46 -0.69 -16.11 16 22 C -0.13 -2.90 2.75 -9.54 -0.03 -2.93 16 23 H 0.10 2.22 8.14 -2.39 -0.02 2.21 16 24 C -0.15 -2.51 4.77 32.05 0.15 -2.36 16 25 C 0.05 0.78 7.78 72.65 0.57 1.34 16 26 O -0.40 -9.86 11.36 -148.98 -1.69 -11.55 16 27 C 0.05 1.22 6.60 72.45 0.48 1.70 16 28 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.04 0.92 8.09 -2.39 -0.02 0.90 16 30 H 0.08 1.27 4.77 -2.38 -0.01 1.25 16 31 H 0.14 4.72 7.36 -2.39 -0.02 4.70 16 32 H 0.15 4.91 7.53 -2.39 -0.02 4.89 16 33 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 34 H 0.14 6.75 5.31 -2.39 -0.01 6.74 16 35 H 0.11 4.80 6.80 -2.39 -0.02 4.79 16 36 H 0.42 8.04 9.10 -74.06 -0.67 7.36 16 37 H 0.11 1.40 7.89 -2.38 -0.02 1.38 16 38 H 0.09 1.36 6.74 -2.39 -0.02 1.34 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.75 7.75 -2.39 -0.02 1.73 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -72.10 356.10 -0.91 -73.00 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.39 Total: 31.04 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 5.05 Total: -9.70 kcal Atomic # 7 Polarization: -88.73 SS G_CDS: -0.56 Total: -89.29 kcal Atomic # 8 Polarization: -156.77 SS G_CDS: -7.52 Total: -164.29 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: 116.15 SS G_CDS: -0.29 Total: 115.86 kcal Total: -72.10 -0.91 -73.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599058810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.023 kcal (2) G-P(sol) polarization free energy of solvation -72.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds