Wall clock time and date at job start Tue Mar 31 2020 20:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36025 * 126.34513 * 2 1 4 4 C 1.50697 * 124.95300 * 359.97438 * 3 2 1 5 5 N 1.46499 * 109.46952 * 265.08284 * 4 3 2 6 6 C 1.36934 * 120.00019 * 272.73149 * 5 4 3 7 7 H 1.08003 * 120.00129 * 141.75711 * 6 5 4 8 8 C 1.38811 * 119.99969 * 322.03184 * 6 5 4 9 9 N 1.31620 * 120.00057 * 157.12581 * 8 6 5 10 10 Si 1.86805 * 119.99897 * 337.12060 * 8 6 5 11 11 H 1.48501 * 109.46827 * 94.56359 * 10 8 6 12 12 H 1.48502 * 109.46988 * 214.56172 * 10 8 6 13 13 H 1.48495 * 109.47006 * 334.56340 * 10 8 6 14 14 C 1.46502 * 119.99973 * 92.73396 * 5 4 3 15 15 C 1.53001 * 109.47247 * 264.28933 * 14 5 4 16 16 C 1.50696 * 109.47323 * 181.73147 * 15 14 5 17 17 O 1.20829 * 120.00036 * 359.97438 * 16 15 14 18 18 O 1.34232 * 120.00152 * 180.02562 * 16 15 14 19 19 N 1.30109 * 110.09632 * 179.71028 * 3 2 1 20 20 C 1.35790 * 109.64854 * 0.26579 * 19 3 2 21 21 C 1.39756 * 133.55669 * 180.02562 * 20 19 3 22 22 C 1.37685 * 119.76133 * 179.97438 * 21 20 19 23 23 Cl 1.73600 * 119.75451 * 179.97438 * 22 21 20 24 24 C 1.38900 * 120.50071 * 0.02562 * 22 21 20 25 25 C 1.37815 * 120.43991 * 359.97438 * 24 22 21 26 26 C 1.38129 * 126.35152 * 180.16351 * 2 1 3 27 27 H 1.09005 * 109.47184 * 93.09630 * 1 2 3 28 28 H 1.08995 * 109.46993 * 213.09310 * 1 2 3 29 29 H 1.09000 * 109.47242 * 333.09652 * 1 2 3 30 30 H 1.08998 * 109.46897 * 145.07960 * 4 3 2 31 31 H 1.09007 * 109.46701 * 25.07949 * 4 3 2 32 32 H 0.97005 * 120.00051 * 179.97438 * 9 8 6 33 33 H 1.09003 * 109.47122 * 24.29014 * 14 5 4 34 34 H 1.09005 * 109.47060 * 144.28826 * 14 5 4 35 35 H 1.08997 * 109.47132 * 301.73462 * 15 14 5 36 36 H 1.09003 * 109.46738 * 61.73040 * 15 14 5 37 37 H 0.96697 * 117.00162 * 179.97438 * 18 16 15 38 38 H 1.08006 * 120.12335 * 359.95636 * 21 20 19 39 39 H 1.08000 * 119.78005 * 179.97438 * 24 22 21 40 40 H 1.08006 * 120.07704 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0956 0.0000 4 6 1.7880 2.5230 -0.0006 5 7 1.7440 3.0231 -1.3768 6 6 2.8600 3.5853 -1.9370 7 1 3.0935 3.4025 -2.9755 8 6 3.6941 4.3857 -1.1685 9 7 4.9504 4.5569 -1.5218 10 14 3.0336 5.2199 0.3669 11 1 3.3239 4.3749 1.5530 12 1 3.6861 6.5438 0.5305 13 1 1.5658 5.4040 0.2375 14 6 0.5062 2.9218 -2.1539 15 6 0.5481 1.6596 -3.0176 16 6 -0.7064 1.5776 -3.8485 17 8 -1.5480 2.4399 -3.7587 18 8 -0.8895 0.5460 -4.6876 19 7 3.5203 0.7316 0.0062 20 6 3.6008 -0.6239 0.0046 21 6 4.6689 -1.5252 0.0095 22 6 4.4205 -2.8794 0.0066 23 17 5.7474 -3.9988 0.0120 24 6 3.1162 -3.3569 -0.0017 25 6 2.0521 -2.4811 -0.0066 26 6 2.2838 -1.1125 -0.0032 27 1 -0.3634 -0.0555 -1.0262 28 1 -0.3633 -0.8609 0.5611 29 1 -0.3634 0.9164 0.4650 30 1 2.4694 3.1375 0.5878 31 1 0.7896 2.5688 0.4347 32 1 5.5333 5.1164 -0.9850 33 1 -0.3454 2.8697 -1.4755 34 1 0.4070 3.7977 -2.7950 35 1 1.4171 1.6975 -3.6745 36 1 0.6164 0.7818 -2.3750 37 1 -1.7099 0.5366 -5.1993 38 1 5.6856 -1.1607 0.0153 39 1 2.9347 -4.4215 -0.0043 40 1 1.0403 -2.8588 -0.0135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600913379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:38 Heat of formation + Delta-G solvation = 7.105776 kcal Electronic energy + Delta-G solvation = -27230.041548 eV Core-core repulsion = 23265.627440 eV Total energy + Delta-G solvation = -3964.414107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.87349 -40.09524 -37.74647 -36.58557 -36.02601 -35.67017 -34.02995 -32.22367 -31.14290 -30.29837 -29.23482 -26.81018 -26.53442 -25.16308 -22.45587 -21.95370 -21.62623 -20.32014 -19.90777 -17.99348 -17.37761 -17.15232 -16.80672 -16.42831 -15.99737 -15.63499 -15.41398 -15.21098 -14.32961 -14.12727 -14.01877 -13.63731 -13.52635 -13.27883 -12.98662 -12.83272 -12.70202 -12.52645 -12.29334 -12.12758 -11.73173 -11.62687 -11.45391 -11.26313 -10.88754 -10.83585 -10.77900 -10.44501 -10.37273 -10.22675 -10.06986 -9.74900 -9.40841 -8.64505 -7.99690 -7.88179 -7.21742 -6.09926 -3.58208 1.07547 1.47923 2.23426 2.33281 2.80906 3.04224 3.21695 3.24668 3.39582 3.41664 3.98388 4.41526 4.49841 4.68914 4.72189 4.83062 5.00078 5.07456 5.16468 5.21851 5.32271 5.36846 5.39519 5.45696 5.54684 5.68733 5.73045 5.77475 5.90941 6.04251 6.18085 6.26772 6.33659 6.50383 6.56976 6.61862 6.65117 6.93349 7.40556 7.81919 7.99196 8.21900 8.42173 8.73428 9.54287 9.82271 11.04066 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009205 B = 0.004673 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.163521 B = 5990.215572 C = 7903.899718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.497 5.497 3 C 0.297 3.703 4 C 0.195 3.805 5 N -0.579 5.579 6 C -0.286 4.286 7 H 0.081 0.919 8 C 0.059 3.941 9 N -0.876 5.876 10 Si 0.866 3.134 11 H -0.279 1.279 12 H -0.295 1.295 13 H -0.265 1.265 14 C 0.160 3.840 15 C -0.140 4.140 16 C 0.481 3.519 17 O -0.520 6.520 18 O -0.523 6.523 19 N -0.465 5.465 20 C 0.065 3.935 21 C -0.054 4.054 22 C -0.048 4.048 23 Cl -0.079 7.079 24 C -0.108 4.108 25 C -0.096 4.096 26 C 0.040 3.960 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.267 0.733 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.402 0.598 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.140 -13.913 2.579 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.188 5.188 3 C 0.029 3.971 4 C 0.066 3.934 5 N -0.298 5.298 6 C -0.414 4.414 7 H 0.098 0.902 8 C -0.145 4.145 9 N -0.513 5.513 10 Si 0.695 3.305 11 H -0.207 1.207 12 H -0.222 1.222 13 H -0.190 1.190 14 C 0.033 3.967 15 C -0.180 4.180 16 C 0.323 3.677 17 O -0.408 6.408 18 O -0.334 6.334 19 N -0.183 5.183 20 C -0.054 4.054 21 C -0.074 4.074 22 C -0.077 4.077 23 Cl -0.050 7.050 24 C -0.129 4.129 25 C -0.117 4.117 26 C -0.070 4.070 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.260 0.740 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.136 -13.051 2.848 16.184 hybrid contribution -1.267 -0.420 0.327 1.375 sum -10.404 -13.471 3.175 17.314 Atomic orbital electron populations 1.21984 0.77066 1.04373 1.03100 1.45483 1.06726 1.05142 1.61416 1.25768 0.84981 0.91883 0.94475 1.20319 0.99262 0.83948 0.89824 1.44146 1.09575 1.65550 1.10544 1.18571 0.99815 1.25205 0.97826 0.90174 1.25323 0.94991 0.96657 0.97535 1.69873 1.03649 1.37794 1.39999 0.87121 0.80083 0.79360 0.83977 1.20708 1.22245 1.18964 1.20789 0.87800 0.94243 0.93843 1.22359 0.92912 1.03860 0.98867 1.23959 0.88664 0.77713 0.77323 1.90692 1.45302 1.39449 1.65368 1.84623 1.46567 1.48416 1.53786 1.70714 1.17626 1.08672 1.21279 1.19002 0.91192 0.91205 1.04049 1.20025 0.98723 0.89388 0.99269 1.20312 0.88484 0.89844 1.09048 1.98340 1.47500 1.61857 1.97292 1.20540 0.89831 0.99581 1.02905 1.19708 0.98948 0.88693 1.04395 1.18943 0.91889 0.89314 1.06866 0.91132 0.90102 0.89235 0.89040 0.91565 0.92327 0.93076 0.90687 0.87272 0.89079 0.73969 0.84465 0.84875 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.51 59.85 0.63 1.45 16 2 N -0.50 -7.71 2.92 -118.50 -0.35 -8.06 16 3 C 0.30 5.76 7.43 -154.84 -1.15 4.61 16 4 C 0.19 3.83 4.99 -5.20 -0.03 3.81 16 5 N -0.58 -12.26 2.06 -174.60 -0.36 -12.62 16 6 C -0.29 -7.40 9.89 -15.06 -0.15 -7.55 16 7 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 8 C 0.06 1.60 5.31 -17.43 -0.09 1.51 16 9 N -0.88 -25.68 13.97 55.49 0.78 -24.90 16 10 Si 0.87 20.53 25.14 -169.99 -4.27 16.25 16 11 H -0.28 -6.51 6.63 56.52 0.37 -6.14 16 12 H -0.30 -7.17 7.11 56.52 0.40 -6.76 16 13 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 14 C 0.16 2.82 5.02 -4.04 -0.02 2.80 16 15 C -0.14 -2.20 6.10 -27.88 -0.17 -2.37 16 16 C 0.48 6.86 8.33 36.00 0.30 7.16 16 17 O -0.52 -8.53 16.73 -18.75 -0.31 -8.84 16 18 O -0.52 -6.02 13.42 -39.26 -0.53 -6.55 16 19 N -0.46 -10.32 11.27 -8.24 -0.09 -10.41 16 20 C 0.07 1.25 7.23 -84.70 -0.61 0.64 16 21 C -0.05 -0.91 9.86 -39.22 -0.39 -1.29 16 22 C -0.05 -0.68 6.31 -39.54 -0.25 -0.93 16 23 Cl -0.08 -0.99 28.94 -51.86 -1.50 -2.49 16 24 C -0.11 -1.34 9.80 -39.49 -0.39 -1.73 16 25 C -0.10 -1.23 10.04 -39.52 -0.40 -1.63 16 26 C 0.04 0.64 6.87 -83.97 -0.58 0.06 16 27 H 0.07 0.71 6.45 -51.93 -0.33 0.37 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.84 6.82 -51.93 -0.35 0.49 16 30 H 0.09 2.04 3.22 -51.93 -0.17 1.87 16 31 H 0.07 1.04 6.49 -51.93 -0.34 0.70 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.05 0.79 7.79 -51.93 -0.40 0.39 16 34 H 0.07 1.42 8.00 -51.93 -0.42 1.00 16 35 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 36 H 0.09 1.38 5.49 -51.93 -0.29 1.10 16 37 H 0.40 2.73 9.10 45.56 0.41 3.15 16 38 H 0.14 2.27 8.06 -52.48 -0.42 1.85 16 39 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 353.17 15.07 5.32 5.32 Total: -1.00 -32.81 353.17 -8.19 -41.00 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.58 Total: 4.78 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -3.29 Total: 6.53 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.02 Total: -55.99 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.84 Total: -15.39 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.27 Total: 16.25 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.81 -8.19 -41.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600913379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.102 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds