Wall clock time and date at job start Tue Mar 31 2020 20:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36025 * 126.34513 * 2 1 4 4 C 1.50697 * 124.95300 * 359.97438 * 3 2 1 5 5 N 1.46499 * 109.46952 * 265.08284 * 4 3 2 6 6 C 1.36934 * 120.00019 * 272.73149 * 5 4 3 7 7 H 1.08003 * 120.00129 * 141.75711 * 6 5 4 8 8 C 1.38811 * 119.99969 * 322.03184 * 6 5 4 9 9 N 1.31620 * 120.00057 * 157.12581 * 8 6 5 10 10 Si 1.86805 * 119.99897 * 337.12060 * 8 6 5 11 11 H 1.48501 * 109.46827 * 94.56359 * 10 8 6 12 12 H 1.48502 * 109.46988 * 214.56172 * 10 8 6 13 13 H 1.48495 * 109.47006 * 334.56340 * 10 8 6 14 14 C 1.46502 * 119.99973 * 92.73396 * 5 4 3 15 15 C 1.53001 * 109.47247 * 264.28933 * 14 5 4 16 16 C 1.50696 * 109.47323 * 181.73147 * 15 14 5 17 17 O 1.20829 * 120.00036 * 359.97438 * 16 15 14 18 18 O 1.34232 * 120.00152 * 180.02562 * 16 15 14 19 19 N 1.30109 * 110.09632 * 179.71028 * 3 2 1 20 20 C 1.35790 * 109.64854 * 0.26579 * 19 3 2 21 21 C 1.39756 * 133.55669 * 180.02562 * 20 19 3 22 22 C 1.37685 * 119.76133 * 179.97438 * 21 20 19 23 23 Cl 1.73600 * 119.75451 * 179.97438 * 22 21 20 24 24 C 1.38900 * 120.50071 * 0.02562 * 22 21 20 25 25 C 1.37815 * 120.43991 * 359.97438 * 24 22 21 26 26 C 1.38129 * 126.35152 * 180.16351 * 2 1 3 27 27 H 1.09005 * 109.47184 * 93.09630 * 1 2 3 28 28 H 1.08995 * 109.46993 * 213.09310 * 1 2 3 29 29 H 1.09000 * 109.47242 * 333.09652 * 1 2 3 30 30 H 1.08998 * 109.46897 * 145.07960 * 4 3 2 31 31 H 1.09007 * 109.46701 * 25.07949 * 4 3 2 32 32 H 0.97005 * 120.00051 * 179.97438 * 9 8 6 33 33 H 1.09003 * 109.47122 * 24.29014 * 14 5 4 34 34 H 1.09005 * 109.47060 * 144.28826 * 14 5 4 35 35 H 1.08997 * 109.47132 * 301.73462 * 15 14 5 36 36 H 1.09003 * 109.46738 * 61.73040 * 15 14 5 37 37 H 0.96697 * 117.00162 * 179.97438 * 18 16 15 38 38 H 1.08006 * 120.12335 * 359.95636 * 21 20 19 39 39 H 1.08000 * 119.78005 * 179.97438 * 24 22 21 40 40 H 1.08006 * 120.07704 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0956 0.0000 4 6 1.7880 2.5230 -0.0006 5 7 1.7440 3.0231 -1.3768 6 6 2.8600 3.5853 -1.9370 7 1 3.0935 3.4025 -2.9755 8 6 3.6941 4.3857 -1.1685 9 7 4.9504 4.5569 -1.5218 10 14 3.0336 5.2199 0.3669 11 1 3.3239 4.3749 1.5530 12 1 3.6861 6.5438 0.5305 13 1 1.5658 5.4040 0.2375 14 6 0.5062 2.9218 -2.1539 15 6 0.5481 1.6596 -3.0176 16 6 -0.7064 1.5776 -3.8485 17 8 -1.5480 2.4399 -3.7587 18 8 -0.8895 0.5460 -4.6876 19 7 3.5203 0.7316 0.0062 20 6 3.6008 -0.6239 0.0046 21 6 4.6689 -1.5252 0.0095 22 6 4.4205 -2.8794 0.0066 23 17 5.7474 -3.9988 0.0120 24 6 3.1162 -3.3569 -0.0017 25 6 2.0521 -2.4811 -0.0066 26 6 2.2838 -1.1125 -0.0032 27 1 -0.3634 -0.0555 -1.0262 28 1 -0.3633 -0.8609 0.5611 29 1 -0.3634 0.9164 0.4650 30 1 2.4694 3.1375 0.5878 31 1 0.7896 2.5688 0.4347 32 1 5.5333 5.1164 -0.9850 33 1 -0.3454 2.8697 -1.4755 34 1 0.4070 3.7977 -2.7950 35 1 1.4171 1.6975 -3.6745 36 1 0.6164 0.7818 -2.3750 37 1 -1.7099 0.5366 -5.1993 38 1 5.6856 -1.1607 0.0153 39 1 2.9347 -4.4215 -0.0043 40 1 1.0403 -2.8588 -0.0135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600913379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:37 Heat of formation + Delta-G solvation = -14.510805 kcal Electronic energy + Delta-G solvation = -27230.978913 eV Core-core repulsion = 23265.627440 eV Total energy + Delta-G solvation = -3965.351473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.12331 -41.22991 -38.95229 -37.97666 -37.10368 -36.88116 -35.22160 -34.06774 -32.63544 -31.41196 -30.61083 -28.08679 -27.71615 -26.78222 -23.82226 -23.15735 -22.94030 -21.67133 -21.22813 -19.16823 -18.89867 -18.44168 -17.99197 -17.70195 -17.31558 -16.95259 -16.72009 -16.62809 -15.62692 -15.45275 -15.16889 -14.95882 -14.92165 -14.54010 -14.45302 -14.22084 -14.00703 -13.74232 -13.37945 -13.29416 -13.07164 -12.92817 -12.75729 -12.59977 -12.52292 -12.08808 -11.98314 -11.92570 -11.85300 -11.62828 -11.56603 -11.23154 -10.75977 -10.63428 -9.22407 -9.07660 -8.99822 -8.17718 -5.63112 -0.10732 0.33129 1.13457 1.19150 1.33754 1.43591 1.53030 1.68700 1.80402 2.13274 2.44604 2.74060 3.06935 3.30366 3.40151 3.53251 3.87141 3.96043 3.99673 4.05178 4.10812 4.27830 4.29609 4.33706 4.45919 4.49808 4.60443 4.61390 4.68774 4.72145 4.89336 4.96147 5.17456 5.22849 5.37498 5.49983 5.60436 5.75499 5.89136 6.15605 6.24617 6.85188 7.02502 7.09657 7.54887 7.89505 9.00889 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009205 B = 0.004673 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.163521 B = 5990.215572 C = 7903.899718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.484 5.484 3 C 0.283 3.717 4 C 0.195 3.805 5 N -0.588 5.588 6 C -0.265 4.265 7 H 0.037 0.963 8 C 0.000 4.000 9 N -0.936 5.936 10 Si 0.930 3.070 11 H -0.277 1.277 12 H -0.308 1.308 13 H -0.237 1.237 14 C 0.160 3.840 15 C -0.130 4.130 16 C 0.497 3.503 17 O -0.540 6.540 18 O -0.515 6.515 19 N -0.529 5.529 20 C 0.021 3.979 21 C -0.082 4.082 22 C -0.043 4.043 23 Cl -0.065 7.065 24 C -0.097 4.097 25 C -0.081 4.081 26 C 0.038 3.962 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.114 0.886 32 H 0.262 0.738 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.427 0.573 38 H 0.120 0.880 39 H 0.172 0.828 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.323 -16.996 3.582 22.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.174 5.174 3 C 0.015 3.985 4 C 0.067 3.933 5 N -0.309 5.309 6 C -0.394 4.394 7 H 0.055 0.945 8 C -0.199 4.199 9 N -0.577 5.577 10 Si 0.758 3.242 11 H -0.205 1.205 12 H -0.236 1.236 13 H -0.160 1.160 14 C 0.034 3.966 15 C -0.170 4.170 16 C 0.340 3.660 17 O -0.430 6.430 18 O -0.329 6.329 19 N -0.249 5.249 20 C -0.098 4.098 21 C -0.102 4.102 22 C -0.072 4.072 23 Cl -0.036 7.036 24 C -0.117 4.117 25 C -0.102 4.102 26 C -0.072 4.072 27 H 0.098 0.902 28 H 0.134 0.866 29 H 0.123 0.877 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.289 0.711 38 H 0.138 0.862 39 H 0.190 0.810 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -13.413 -16.187 3.837 21.370 hybrid contribution 0.022 0.259 -0.081 0.272 sum -13.391 -15.929 3.756 21.146 Atomic orbital electron populations 1.22455 0.73773 1.06906 1.04553 1.45524 1.08341 1.03676 1.59847 1.25271 0.85068 0.92587 0.95588 1.20243 1.01018 0.83820 0.88222 1.44098 1.09309 1.66161 1.11312 1.18339 1.00695 1.24202 0.96174 0.94534 1.25970 0.94941 0.97812 1.01162 1.70025 1.05336 1.40043 1.42314 0.86080 0.80701 0.77203 0.80254 1.20472 1.23609 1.15970 1.20856 0.87180 0.94384 0.94130 1.22038 0.92993 1.03327 0.98689 1.23344 0.87547 0.77835 0.77280 1.90698 1.45861 1.40286 1.66180 1.84544 1.48223 1.46820 1.53278 1.70550 1.20061 1.11193 1.23091 1.19316 0.93556 0.90527 1.06383 1.20060 0.97865 0.90748 1.01573 1.20484 0.90000 0.88994 1.07726 1.98346 1.47245 1.60904 1.97145 1.21030 0.88540 1.01512 1.00599 1.20205 1.01197 0.86806 1.02000 1.19238 0.90589 0.90695 1.06715 0.90169 0.86642 0.87745 0.91957 0.86822 0.92916 0.89643 0.92507 0.89967 0.88021 0.71119 0.86220 0.81034 0.81244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 10.51 127.77 1.34 2.37 16 2 N -0.48 -13.75 2.92 -528.82 -1.54 -15.29 16 3 C 0.28 10.89 7.43 137.92 1.02 11.91 16 4 C 0.19 7.45 4.99 85.63 0.43 7.87 16 5 N -0.59 -24.92 2.06 -706.33 -1.46 -26.37 16 6 C -0.26 -14.37 9.89 84.03 0.83 -13.53 16 7 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 8 C 0.00 -0.02 5.31 84.86 0.45 0.43 16 9 N -0.94 -58.74 13.97 21.65 0.30 -58.44 16 10 Si 0.93 43.92 25.14 68.60 1.72 45.64 16 11 H -0.28 -12.84 6.63 99.48 0.66 -12.18 16 12 H -0.31 -14.96 7.11 99.48 0.71 -14.25 16 13 H -0.24 -9.93 7.11 99.48 0.71 -9.23 16 14 C 0.16 5.42 5.02 86.38 0.43 5.86 16 15 C -0.13 -3.94 6.10 29.85 0.18 -3.76 16 16 C 0.50 12.93 8.33 71.23 0.59 13.52 16 17 O -0.54 -16.32 16.73 21.95 0.37 -15.95 16 18 O -0.51 -10.18 13.42 -51.44 -0.69 -10.87 16 19 N -0.53 -24.45 11.27 -179.98 -2.03 -26.48 16 20 C 0.02 0.83 7.23 39.44 0.29 1.12 16 21 C -0.08 -2.85 9.86 22.51 0.22 -2.63 16 22 C -0.04 -1.16 6.31 22.30 0.14 -1.02 16 23 Cl -0.07 -1.55 28.94 -2.72 -0.08 -1.63 16 24 C -0.10 -2.01 9.80 22.33 0.22 -1.79 16 25 C -0.08 -1.71 10.04 22.31 0.22 -1.48 16 26 C 0.04 1.14 6.87 38.83 0.27 1.41 16 27 H 0.08 1.19 6.45 -2.38 -0.02 1.18 16 28 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 1.40 6.82 -2.39 -0.02 1.38 16 30 H 0.06 2.77 3.22 -2.39 -0.01 2.76 16 31 H 0.11 3.16 6.49 -2.38 -0.02 3.14 16 32 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 33 H 0.09 2.33 7.79 -2.39 -0.02 2.31 16 34 H 0.06 2.13 8.00 -2.38 -0.02 2.11 16 35 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.10 2.85 5.49 -2.39 -0.01 2.84 16 37 H 0.43 4.17 9.10 -74.06 -0.67 3.50 16 38 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 39 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 40 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -79.33 353.17 3.63 -75.70 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.39 Total: 13.42 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 6.64 Total: 20.27 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -4.73 Total: -126.58 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.32 Total: -26.82 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.72 Total: 45.64 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -79.33 3.63 -75.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600913379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.192 kcal (2) G-P(sol) polarization free energy of solvation -79.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds