Wall clock time and date at job start Tue Mar 31 2020 19:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99851 * 2 1 4 4 H 1.48495 * 109.47163 * 239.99787 * 3 2 1 5 5 H 1.48499 * 109.47120 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46979 * 119.99924 * 3 2 1 7 7 C 1.38814 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 156.16068 * 7 2 1 9 9 N 1.36941 * 119.99805 * 336.16331 * 7 2 1 10 10 C 1.46496 * 120.00267 * 326.59626 * 9 7 2 11 11 C 1.50704 * 109.46871 * 276.18390 * 10 9 7 12 12 O 1.20831 * 120.00324 * 359.97438 * 11 10 9 13 13 O 1.34231 * 120.00032 * 179.97438 * 11 10 9 14 14 S 1.65599 * 119.99673 * 146.59335 * 9 7 2 15 15 O 1.42098 * 104.27916 * 333.93031 * 14 9 7 16 16 O 1.42101 * 104.27654 * 206.07006 * 14 9 7 17 17 C 1.81397 * 104.44994 * 90.00066 * 14 9 7 18 18 C 1.53001 * 109.47480 * 179.97438 * 17 14 9 19 19 O 1.42895 * 109.47296 * 179.97438 * 18 17 14 20 20 C 1.42898 * 114.00142 * 180.02562 * 19 18 17 21 21 C 1.53178 * 109.54082 * 269.55542 * 20 19 18 22 22 C 1.53098 * 109.16314 * 183.14943 * 21 20 19 23 23 O 1.42904 * 109.41010 * 57.60902 * 22 21 20 24 24 C 1.42901 * 114.10406 * 298.84147 * 23 22 21 25 25 C 1.53089 * 109.41220 * 61.15397 * 24 23 22 26 26 H 0.97000 * 120.00148 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47098 * 36.18103 * 10 9 7 28 28 H 1.08993 * 109.47739 * 156.18504 * 10 9 7 29 29 H 0.96705 * 116.99837 * 180.02562 * 13 11 10 30 30 H 1.09000 * 109.47133 * 59.99803 * 17 14 9 31 31 H 1.09005 * 109.47290 * 299.99882 * 17 14 9 32 32 H 1.09000 * 109.47024 * 59.99827 * 18 17 14 33 33 H 1.08999 * 109.47208 * 300.00018 * 18 17 14 34 34 H 1.08995 * 109.61689 * 29.77884 * 20 19 18 35 35 H 1.09003 * 109.52660 * 303.05565 * 21 20 19 36 36 H 1.08998 * 109.52454 * 63.24649 * 21 20 19 37 37 H 1.08998 * 109.48004 * 297.63249 * 22 21 20 38 38 H 1.08995 * 109.48235 * 177.58957 * 22 21 20 39 39 H 1.09005 * 109.47862 * 301.18005 * 24 23 22 40 40 H 1.08993 * 109.49302 * 181.15212 * 24 23 22 41 41 H 1.08997 * 109.52274 * 182.48805 * 25 24 23 42 42 H 1.09004 * 109.51875 * 62.30960 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0211 -1.2422 -0.3774 9 7 1.4131 -2.3373 0.4803 10 6 0.4601 -2.2508 1.5895 11 6 1.2104 -2.2362 2.8964 12 8 2.4174 -2.2927 2.9009 13 8 0.5378 -2.1604 4.0556 14 16 1.7684 -3.8077 -0.1934 15 8 2.1665 -3.4976 -1.5218 16 8 0.6145 -4.5973 0.0602 17 6 3.1805 -4.4171 0.7684 18 6 3.6074 -5.7865 0.2361 19 8 4.7201 -6.2662 0.9934 20 6 5.2000 -7.5454 0.5748 21 6 4.4748 -8.6455 1.3561 22 6 5.0503 -10.0072 0.9582 23 8 6.4565 -10.0212 1.2123 24 6 7.1928 -9.0448 0.4730 25 6 6.7033 -7.6445 0.8512 26 1 -0.4850 0.8400 0.0004 27 1 -0.1244 -1.3355 1.4959 28 1 -0.2072 -3.1123 1.5633 29 1 1.0625 -2.1537 4.8679 30 1 2.8943 -4.5080 1.8162 31 1 4.0110 -3.7168 0.6781 32 1 3.8934 -5.6960 -0.8118 33 1 2.7768 -6.4866 0.3268 34 1 5.0162 -7.6741 -0.4918 35 1 4.6179 -8.4879 2.4251 36 1 3.4106 -8.6174 1.1221 37 1 4.8709 -10.1817 -0.1026 38 1 4.5676 -10.7906 1.5425 39 1 7.0414 -9.2068 -0.5943 40 1 8.2534 -9.1349 0.7073 41 1 7.2329 -6.9004 0.2562 42 1 6.8916 -7.4665 1.9101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071919.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:11 Heat of formation + Delta-G solvation = -244.117252 kcal Electronic energy + Delta-G solvation = -28360.333783 eV Core-core repulsion = 24047.467863 eV Total energy + Delta-G solvation = -4312.865920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.117 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.84131 -39.47329 -37.69490 -36.27320 -35.96417 -35.13813 -34.92991 -33.19237 -31.50911 -31.43394 -30.79412 -27.70596 -24.78229 -24.32102 -23.94429 -22.97580 -21.05245 -20.63880 -18.63779 -17.75415 -17.45898 -17.09814 -16.77122 -16.40238 -16.20012 -15.83783 -15.73245 -15.28195 -15.07218 -15.01773 -14.77287 -14.52440 -14.19583 -13.96019 -13.50802 -13.39388 -12.72457 -12.60398 -12.23872 -12.01994 -11.85033 -11.62886 -11.56381 -11.38131 -11.33194 -11.24090 -11.04440 -10.98430 -10.94014 -10.85769 -10.70470 -10.59466 -10.34344 -10.28233 -9.97563 -9.86748 -9.62651 -9.22123 -7.94824 -6.38321 -4.07569 1.01591 2.95900 3.18714 3.24886 3.27175 3.36336 3.49800 3.61163 3.98668 4.29231 4.44806 4.48607 4.61432 4.66083 4.77996 4.81406 4.89160 4.92821 5.00727 5.11138 5.16850 5.20960 5.25053 5.33871 5.36716 5.54446 5.71598 5.80207 5.86478 5.91949 5.97549 6.00357 6.16862 6.61932 6.85523 7.01656 7.10089 7.13683 7.54159 8.23514 8.61742 8.83385 9.22920 10.66162 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.017539 B = 0.003106 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.069729 B = 9012.980914 C = 9306.751946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.917 3.083 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.294 4.294 8 H 0.095 0.905 9 N -0.824 5.824 10 C 0.117 3.883 11 C 0.450 3.550 12 O -0.513 6.513 13 O -0.527 6.527 14 S 2.584 3.416 15 O -0.949 6.949 16 O -0.985 6.985 17 C -0.631 4.631 18 C 0.077 3.923 19 O -0.367 6.367 20 C 0.082 3.918 21 C -0.182 4.182 22 C 0.064 3.936 23 O -0.383 6.383 24 C 0.064 3.936 25 C -0.154 4.154 26 H 0.271 0.729 27 H 0.158 0.842 28 H 0.109 0.891 29 H 0.394 0.606 30 H 0.132 0.868 31 H 0.139 0.861 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.129 -13.030 3.777 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.168 4.168 3 Si 0.743 3.257 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.426 4.426 8 H 0.113 0.887 9 N -0.653 5.653 10 C -0.013 4.013 11 C 0.291 3.709 12 O -0.400 6.400 13 O -0.337 6.337 14 S 2.679 3.321 15 O -0.940 6.940 16 O -0.975 6.975 17 C -0.756 4.756 18 C -0.001 4.001 19 O -0.286 6.286 20 C 0.024 3.976 21 C -0.220 4.220 22 C -0.013 4.013 23 O -0.302 6.302 24 C -0.013 4.013 25 C -0.192 4.192 26 H 0.081 0.919 27 H 0.175 0.825 28 H 0.126 0.874 29 H 0.251 0.749 30 H 0.150 0.850 31 H 0.157 0.843 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.844 -13.450 2.934 15.374 hybrid contribution 1.012 1.157 0.918 1.790 sum 7.856 -12.293 3.852 15.089 Atomic orbital electron populations 1.69860 1.05961 1.27820 1.46782 1.25276 0.95197 0.99692 0.96633 0.86153 0.79403 0.80914 0.79235 1.19500 1.20849 1.19949 1.19002 0.97271 0.85106 1.41244 0.88701 1.52332 1.54213 1.19546 1.39257 1.21085 0.92148 1.09244 0.78779 1.25485 0.87907 0.71195 0.86323 1.90626 1.15994 1.45762 1.87630 1.84636 1.45812 1.86119 1.17157 1.06209 0.75711 0.74758 0.75380 1.93515 1.84324 1.82684 1.33430 1.93472 1.45319 1.72169 1.86510 1.30946 1.23051 1.04693 1.16913 1.22134 0.89749 0.93231 0.94936 1.88029 1.48421 1.33865 1.58296 1.22142 0.93981 0.83766 0.97695 1.22776 1.01061 0.95425 1.02767 1.22567 0.81432 0.96804 1.00472 1.87933 1.18739 1.56233 1.67303 1.22586 0.96534 0.86694 0.95437 1.22304 0.94533 0.98161 1.04194 0.91884 0.82540 0.87365 0.74907 0.85008 0.84272 0.92045 0.92345 0.91806 0.89896 0.90361 0.92978 0.88421 0.92944 0.88240 0.89948 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.36 11.26 55.49 0.63 -21.73 16 2 C 0.04 0.97 4.99 -17.43 -0.09 0.88 16 3 Si 0.92 20.05 29.62 -169.99 -5.03 15.02 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 7 C -0.29 -7.52 8.61 -15.06 -0.13 -7.65 16 8 H 0.10 2.38 7.93 -52.49 -0.42 1.96 16 9 N -0.82 -19.50 2.32 -61.09 -0.14 -19.64 16 10 C 0.12 2.55 5.87 -5.19 -0.03 2.52 16 11 C 0.45 8.94 8.36 36.01 0.30 9.24 16 12 O -0.51 -11.07 15.87 -18.75 -0.30 -11.37 16 13 O -0.53 -8.40 13.42 -39.26 -0.53 -8.92 16 14 S 2.58 55.76 5.39 -107.50 -0.58 55.18 16 15 O -0.95 -23.09 17.22 -57.54 -0.99 -24.08 16 16 O -0.98 -22.04 16.52 -57.54 -0.95 -22.99 16 17 C -0.63 -11.34 6.16 37.16 0.23 -11.11 16 18 C 0.08 1.21 5.76 37.16 0.21 1.42 16 19 O -0.37 -5.58 10.00 -35.23 -0.35 -5.93 16 20 C 0.08 0.97 2.70 -26.55 -0.07 0.90 16 21 C -0.18 -1.91 5.76 -26.59 -0.15 -2.06 16 22 C 0.06 0.57 6.84 37.21 0.25 0.82 16 23 O -0.38 -4.01 10.76 -35.23 -0.38 -4.39 16 24 C 0.06 0.55 6.84 37.20 0.25 0.81 16 25 C -0.15 -1.56 5.79 -26.60 -0.15 -1.72 16 26 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 27 H 0.16 3.65 5.31 -51.93 -0.28 3.38 16 28 H 0.11 2.17 6.80 -51.93 -0.35 1.82 16 29 H 0.39 4.38 9.10 45.56 0.41 4.79 16 30 H 0.13 2.35 7.36 -51.92 -0.38 1.97 16 31 H 0.14 2.51 8.14 -51.92 -0.42 2.09 16 32 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 33 H 0.06 0.82 8.00 -51.93 -0.42 0.41 16 34 H 0.06 0.67 7.79 -51.93 -0.40 0.27 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.78 7.99 -51.93 -0.42 0.36 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 363.20 15.07 5.47 5.47 Total: -1.00 -32.74 363.20 -7.71 -40.45 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.18 Total: 8.89 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 0.63 Total: -5.95 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.48 Total: -41.37 kcal Atomic # 8 Polarization: -74.19 SS G_CDS: -3.50 Total: -77.68 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Atomic # 16 Polarization: 55.76 SS G_CDS: -0.58 Total: 55.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.74 -7.71 -40.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071919.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.666 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds