Wall clock time and date at job start Tue Mar 31 2020 19:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99851 * 2 1 4 4 H 1.48495 * 109.47163 * 239.99787 * 3 2 1 5 5 H 1.48499 * 109.47120 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46979 * 119.99924 * 3 2 1 7 7 C 1.38814 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99994 * 156.16068 * 7 2 1 9 9 N 1.36941 * 119.99805 * 336.16331 * 7 2 1 10 10 C 1.46496 * 120.00267 * 326.59626 * 9 7 2 11 11 C 1.50704 * 109.46871 * 276.18390 * 10 9 7 12 12 O 1.20831 * 120.00324 * 359.97438 * 11 10 9 13 13 O 1.34231 * 120.00032 * 179.97438 * 11 10 9 14 14 S 1.65599 * 119.99673 * 146.59335 * 9 7 2 15 15 O 1.42098 * 104.27916 * 333.93031 * 14 9 7 16 16 O 1.42101 * 104.27654 * 206.07006 * 14 9 7 17 17 C 1.81397 * 104.44994 * 90.00066 * 14 9 7 18 18 C 1.53001 * 109.47480 * 179.97438 * 17 14 9 19 19 O 1.42895 * 109.47296 * 179.97438 * 18 17 14 20 20 C 1.42898 * 114.00142 * 180.02562 * 19 18 17 21 21 C 1.53178 * 109.54082 * 269.55542 * 20 19 18 22 22 C 1.53098 * 109.16314 * 183.14943 * 21 20 19 23 23 O 1.42904 * 109.41010 * 57.60902 * 22 21 20 24 24 C 1.42901 * 114.10406 * 298.84147 * 23 22 21 25 25 C 1.53089 * 109.41220 * 61.15397 * 24 23 22 26 26 H 0.97000 * 120.00148 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47098 * 36.18103 * 10 9 7 28 28 H 1.08993 * 109.47739 * 156.18504 * 10 9 7 29 29 H 0.96705 * 116.99837 * 180.02562 * 13 11 10 30 30 H 1.09000 * 109.47133 * 59.99803 * 17 14 9 31 31 H 1.09005 * 109.47290 * 299.99882 * 17 14 9 32 32 H 1.09000 * 109.47024 * 59.99827 * 18 17 14 33 33 H 1.08999 * 109.47208 * 300.00018 * 18 17 14 34 34 H 1.08995 * 109.61689 * 29.77884 * 20 19 18 35 35 H 1.09003 * 109.52660 * 303.05565 * 21 20 19 36 36 H 1.08998 * 109.52454 * 63.24649 * 21 20 19 37 37 H 1.08998 * 109.48004 * 297.63249 * 22 21 20 38 38 H 1.08995 * 109.48235 * 177.58957 * 22 21 20 39 39 H 1.09005 * 109.47862 * 301.18005 * 24 23 22 40 40 H 1.08993 * 109.49302 * 181.15212 * 24 23 22 41 41 H 1.08997 * 109.52274 * 182.48805 * 25 24 23 42 42 H 1.09004 * 109.51875 * 62.30960 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0211 -1.2422 -0.3774 9 7 1.4131 -2.3373 0.4803 10 6 0.4601 -2.2508 1.5895 11 6 1.2104 -2.2362 2.8964 12 8 2.4174 -2.2927 2.9009 13 8 0.5378 -2.1604 4.0556 14 16 1.7684 -3.8077 -0.1934 15 8 2.1665 -3.4976 -1.5218 16 8 0.6145 -4.5973 0.0602 17 6 3.1805 -4.4171 0.7684 18 6 3.6074 -5.7865 0.2361 19 8 4.7201 -6.2662 0.9934 20 6 5.2000 -7.5454 0.5748 21 6 4.4748 -8.6455 1.3561 22 6 5.0503 -10.0072 0.9582 23 8 6.4565 -10.0212 1.2123 24 6 7.1928 -9.0448 0.4730 25 6 6.7033 -7.6445 0.8512 26 1 -0.4850 0.8400 0.0004 27 1 -0.1244 -1.3355 1.4959 28 1 -0.2072 -3.1123 1.5633 29 1 1.0625 -2.1537 4.8679 30 1 2.8943 -4.5080 1.8162 31 1 4.0110 -3.7168 0.6781 32 1 3.8934 -5.6960 -0.8118 33 1 2.7768 -6.4866 0.3268 34 1 5.0162 -7.6741 -0.4918 35 1 4.6179 -8.4879 2.4251 36 1 3.4106 -8.6174 1.1221 37 1 4.8709 -10.1817 -0.1026 38 1 4.5676 -10.7906 1.5425 39 1 7.0414 -9.2068 -0.5943 40 1 8.2534 -9.1349 0.7073 41 1 7.2329 -6.9004 0.2562 42 1 6.8916 -7.4665 1.9101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071919.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:10 Heat of formation + Delta-G solvation = -269.642364 kcal Electronic energy + Delta-G solvation = -28361.440634 eV Core-core repulsion = 24047.467863 eV Total energy + Delta-G solvation = -4313.972772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.117 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.02499 -40.66978 -38.68355 -38.06670 -37.61412 -36.89274 -36.59165 -34.18766 -33.38245 -32.15639 -32.00823 -29.44142 -26.19842 -25.59920 -24.76366 -24.16741 -22.61927 -21.45198 -20.42202 -19.30508 -19.02222 -18.55587 -18.21634 -17.41958 -17.30181 -17.10102 -16.94452 -16.80398 -16.52881 -16.43917 -16.18881 -15.84788 -15.31687 -15.20541 -14.88031 -14.42052 -14.18937 -13.67057 -13.62841 -13.35741 -13.25157 -13.17854 -13.07793 -13.07012 -12.81531 -12.63855 -12.54908 -12.41291 -12.25783 -12.24021 -12.07905 -12.06036 -11.89031 -11.54558 -11.37236 -11.02628 -10.72483 -10.62321 -9.78919 -8.26591 -6.01019 -0.66522 1.37273 1.45632 1.48885 1.55579 1.78720 2.29404 2.41998 2.58928 2.86897 2.93339 3.19487 3.27134 3.48240 3.64917 3.77048 3.78616 3.93153 4.01226 4.02048 4.22804 4.27911 4.34305 4.39497 4.47995 4.49673 4.63488 4.70112 4.72865 4.78631 4.92050 4.99913 5.06605 5.13536 5.27352 5.68340 5.72724 6.03846 6.18568 6.35810 6.94826 7.17976 7.33119 8.77822 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.017539 B = 0.003106 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.069729 B = 9012.980914 C = 9306.751946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.317 4.317 8 H 0.090 0.910 9 N -0.840 5.840 10 C 0.109 3.891 11 C 0.460 3.540 12 O -0.532 6.532 13 O -0.514 6.514 14 S 2.595 3.405 15 O -0.982 6.982 16 O -0.996 6.996 17 C -0.608 4.608 18 C 0.072 3.928 19 O -0.385 6.385 20 C 0.070 3.930 21 C -0.181 4.181 22 C 0.064 3.936 23 O -0.401 6.401 24 C 0.065 3.935 25 C -0.152 4.152 26 H 0.273 0.727 27 H 0.143 0.857 28 H 0.119 0.881 29 H 0.420 0.580 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.052 -14.064 4.291 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.204 4.204 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.449 4.449 8 H 0.108 0.892 9 N -0.669 5.669 10 C -0.020 4.020 11 C 0.301 3.699 12 O -0.422 6.422 13 O -0.326 6.326 14 S 2.694 3.306 15 O -0.973 6.973 16 O -0.986 6.986 17 C -0.738 4.738 18 C -0.006 4.006 19 O -0.304 6.304 20 C 0.012 3.988 21 C -0.219 4.219 22 C -0.013 4.013 23 O -0.320 6.320 24 C -0.012 4.012 25 C -0.190 4.190 26 H 0.083 0.917 27 H 0.159 0.841 28 H 0.137 0.863 29 H 0.281 0.719 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.086 0.914 40 H 0.134 0.866 41 H 0.106 0.894 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.723 -14.452 3.462 16.748 hybrid contribution 0.738 1.354 0.857 1.764 sum 8.461 -13.098 4.319 16.180 Atomic orbital electron populations 1.69937 1.06860 1.28474 1.47742 1.25953 0.95897 1.02097 0.96482 0.85351 0.78375 0.77894 0.79009 1.19268 1.20158 1.20017 1.19142 0.97517 0.86340 1.41859 0.89194 1.52394 1.54506 1.19735 1.40299 1.21033 0.92257 1.08998 0.79741 1.24866 0.87251 0.70909 0.86840 1.90619 1.16627 1.46806 1.88127 1.84540 1.45555 1.85243 1.17291 1.05446 0.76225 0.74009 0.74918 1.93475 1.84935 1.83176 1.35696 1.93451 1.46716 1.71837 1.86639 1.30601 1.20716 1.06347 1.16089 1.22192 0.90893 0.92056 0.95487 1.87991 1.48123 1.35717 1.58613 1.22480 0.94963 0.82567 0.98780 1.22769 1.01355 0.96045 1.01758 1.22675 0.80821 0.96076 1.01683 1.87914 1.19488 1.56656 1.67963 1.22714 0.97155 0.85167 0.96145 1.22321 0.93635 0.99577 1.03489 0.91711 0.84066 0.86305 0.71923 0.84578 0.84280 0.90811 0.90763 0.90350 0.91258 0.89924 0.91448 0.87076 0.91395 0.86644 0.89419 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.56 11.26 21.65 0.24 -46.31 16 2 C 0.00 -0.04 4.99 84.86 0.42 0.38 16 3 Si 0.97 41.14 29.62 68.60 2.03 43.17 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.32 -16.42 8.61 84.03 0.72 -15.70 16 8 H 0.09 4.60 7.93 -2.92 -0.02 4.58 16 9 N -0.84 -40.04 2.32 -347.19 -0.80 -40.84 16 10 C 0.11 4.74 5.87 85.63 0.50 5.25 16 11 C 0.46 17.82 8.36 71.24 0.60 18.42 16 12 O -0.53 -22.48 15.87 21.95 0.35 -22.14 16 13 O -0.51 -15.33 13.42 -51.42 -0.69 -16.02 16 14 S 2.60 111.83 5.39 -56.49 -0.30 111.53 16 15 O -0.98 -48.22 17.22 -127.65 -2.20 -50.42 16 16 O -1.00 -44.25 16.52 -127.65 -2.11 -46.36 16 17 C -0.61 -21.30 6.16 71.98 0.44 -20.86 16 18 C 0.07 2.13 5.76 71.98 0.41 2.54 16 19 O -0.38 -11.14 10.00 -148.98 -1.49 -12.63 16 20 C 0.07 1.51 2.70 30.71 0.08 1.60 16 21 C -0.18 -3.50 5.76 30.69 0.18 -3.33 16 22 C 0.06 0.99 6.84 72.01 0.49 1.49 16 23 O -0.40 -7.56 10.76 -148.98 -1.60 -9.16 16 24 C 0.06 0.96 6.84 72.01 0.49 1.45 16 25 C -0.15 -2.86 5.79 30.68 0.18 -2.68 16 26 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 27 H 0.14 6.69 5.31 -2.39 -0.01 6.68 16 28 H 0.12 4.77 6.80 -2.39 -0.02 4.75 16 29 H 0.42 8.17 9.10 -74.05 -0.67 7.49 16 30 H 0.14 4.70 7.36 -2.39 -0.02 4.68 16 31 H 0.14 4.93 8.14 -2.39 -0.02 4.91 16 32 H 0.07 1.99 8.09 -2.39 -0.02 1.97 16 33 H 0.07 1.95 8.00 -2.39 -0.02 1.93 16 34 H 0.08 1.47 7.79 -2.39 -0.02 1.45 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.49 7.99 -2.39 -0.02 1.48 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -69.55 363.20 -1.68 -71.23 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.37 Total: 29.39 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 4.53 Total: -11.44 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -0.56 Total: -87.16 kcal Atomic # 8 Polarization: -148.97 SS G_CDS: -7.74 Total: -156.72 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 111.83 SS G_CDS: -0.30 Total: 111.53 kcal Total: -69.55 -1.68 -71.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071919.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.415 kcal (2) G-P(sol) polarization free energy of solvation -69.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds