Wall clock time and date at job start Tue Mar 31 2020 19:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47311 * 2 1 4 4 H 1.08998 * 109.47593 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47219 * 299.94139 * 3 2 1 6 6 H 1.07991 * 120.00168 * 115.89715 * 5 3 2 7 7 C 1.37883 * 119.99521 * 295.89838 * 5 3 2 8 8 N 1.31514 * 119.99785 * 353.47489 * 7 5 3 9 9 Si 1.86801 * 119.99808 * 173.47939 * 7 5 3 10 10 H 1.48499 * 109.47021 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.46724 * 299.99463 * 9 7 5 12 12 H 1.48496 * 109.47032 * 59.99653 * 9 7 5 13 13 N 1.46508 * 109.47234 * 59.93821 * 3 2 1 14 14 S 1.65602 * 120.00186 * 95.70391 * 13 3 2 15 15 O 1.42090 * 106.40049 * 178.00434 * 14 13 3 16 16 O 1.42099 * 106.39986 * 310.92595 * 14 13 3 17 17 C 1.76196 * 107.21346 * 64.46126 * 14 13 3 18 18 C 1.38339 * 119.94537 * 269.72462 * 17 14 13 19 19 C 1.38289 * 120.23752 * 179.73161 * 18 17 14 20 20 C 1.38058 * 120.11804 * 0.54510 * 19 18 17 21 21 C 1.39281 * 119.87871 * 359.73522 * 20 19 18 22 22 C 1.48463 * 120.11618 * 180.02562 * 21 20 19 23 23 N 1.34052 * 126.67218 * 179.66232 * 22 21 20 24 24 N 1.28983 * 107.26287 * 179.86423 * 23 22 21 25 25 N 1.28727 * 108.95007 * 0.40104 * 24 23 22 26 26 H 0.97000 * 125.34566 * 179.77992 * 25 24 23 27 27 N 1.28877 * 109.31316 * 359.74501 * 25 24 23 28 28 C 1.38012 * 119.93808 * 90.00673 * 17 14 13 29 29 H 1.08997 * 109.47110 * 305.00616 * 1 2 3 30 30 H 1.09006 * 109.46711 * 65.00787 * 1 2 3 31 31 H 1.08997 * 109.47302 * 185.00151 * 1 2 3 32 32 H 1.08998 * 109.47457 * 239.99841 * 2 1 3 33 33 H 1.09007 * 109.47083 * 119.99410 * 2 1 3 34 34 H 0.96997 * 120.00472 * 355.01662 * 8 7 5 35 35 H 0.97003 * 119.99803 * 275.71297 * 13 3 2 36 36 H 1.07995 * 119.87917 * 359.97438 * 18 17 14 37 37 H 1.08001 * 119.94383 * 180.27679 * 19 18 17 38 38 H 1.07996 * 120.05864 * 179.75175 * 20 19 18 39 39 H 1.08001 * 120.05714 * 359.96901 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0005 5 6 1.5389 2.1525 -1.2312 6 1 0.8645 2.9904 -1.1345 7 6 1.9416 1.7323 -2.4812 8 7 2.8598 0.7979 -2.5966 9 14 1.1828 2.4902 -4.0106 10 1 1.7826 1.8708 -5.2197 11 1 -0.2828 2.2510 -4.0066 12 1 1.4459 3.9517 -4.0214 13 7 1.5505 2.1336 1.1955 14 16 2.5055 2.2312 2.5449 15 8 1.7760 2.9913 3.4984 16 8 2.9788 0.9154 2.7975 17 6 3.9174 3.1940 2.1159 18 6 5.0496 2.5751 1.6170 19 6 6.1591 3.3255 1.2731 20 6 6.1463 4.6963 1.4369 21 6 5.0111 5.3238 1.9442 22 6 4.9913 6.7977 2.1219 23 7 3.9736 7.5340 2.5900 24 7 4.3599 8.7647 2.5899 25 7 5.5632 8.8251 2.1368 26 1 6.0833 9.6372 2.0321 27 7 5.9689 7.6372 1.8449 28 6 3.8939 4.5637 2.2837 29 1 -0.3633 0.5895 0.8417 30 1 -0.3633 0.4342 -0.9315 31 1 -0.3634 -1.0237 0.0896 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.3057 0.4557 -1.8060 35 1 0.6669 2.5339 1.1966 36 1 5.0655 1.5026 1.4919 37 1 7.0389 2.8379 0.8799 38 1 7.0147 5.2809 1.1718 39 1 3.0109 5.0454 2.6771 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604014066.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:08 Heat of formation + Delta-G solvation = 68.654314 kcal Electronic energy + Delta-G solvation = -26987.803943 eV Core-core repulsion = 23060.395238 eV Total energy + Delta-G solvation = -3927.408705 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.62517 -39.23606 -36.91811 -36.25159 -35.41948 -34.59364 -33.79230 -32.29332 -31.31903 -30.70599 -30.43591 -25.92448 -25.03538 -24.67837 -23.76401 -22.93329 -21.94143 -20.17960 -19.49349 -18.91516 -17.66394 -17.58893 -17.31170 -16.78651 -16.02054 -15.60992 -15.13023 -14.72570 -14.24938 -13.94217 -13.74529 -13.67778 -13.40919 -13.26448 -13.09063 -12.68151 -12.55033 -12.26210 -11.71032 -11.67055 -11.56153 -11.45740 -11.41510 -11.33065 -11.21851 -11.12810 -10.88560 -10.68895 -10.47571 -10.28976 -10.17288 -9.93245 -9.38758 -9.04250 -8.83626 -8.45627 -8.29531 -6.46867 -4.21087 0.49857 0.80946 0.99791 1.09233 2.04104 2.16535 3.37642 3.38464 3.41656 3.47516 3.57132 3.68987 4.01694 4.19858 4.43907 4.65056 4.88787 4.91964 4.96516 5.22110 5.23539 5.32108 5.44500 5.56809 5.81233 6.02004 6.03235 6.13793 6.17360 6.19916 6.22860 6.33821 6.43508 6.69731 6.82249 6.99597 7.19678 7.29624 7.39012 7.66432 7.96534 8.06665 8.33618 8.69873 9.46644 10.88713 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.004278 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.477903 B = 6543.375276 C = 7693.878165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.140 4.140 3 C 0.268 3.732 4 H 0.032 0.968 5 C -0.598 4.598 6 H 0.058 0.942 7 C 0.029 3.971 8 N -0.904 5.904 9 Si 1.063 2.937 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.289 1.289 13 N -1.091 6.091 14 S 2.689 3.311 15 O -0.975 6.975 16 O -0.961 6.961 17 C -0.669 4.669 18 C 0.008 3.992 19 C -0.140 4.140 20 C -0.030 4.030 21 C -0.047 4.047 22 C 0.227 3.773 23 N -0.264 5.264 24 N -0.048 5.048 25 N -0.229 5.229 26 H 0.475 0.525 27 N -0.296 5.296 28 C 0.027 3.973 29 H 0.038 0.962 30 H 0.062 0.938 31 H 0.028 0.972 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.272 0.728 35 H 0.413 0.587 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.468 10.292 7.428 14.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.180 4.180 3 C 0.163 3.837 4 H 0.050 0.950 5 C -0.638 4.638 6 H 0.077 0.923 7 C -0.177 4.177 8 N -0.540 5.540 9 Si 0.891 3.109 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.216 1.216 13 N -0.853 5.853 14 S 2.776 3.224 15 O -0.965 6.965 16 O -0.951 6.951 17 C -0.753 4.753 18 C -0.012 4.012 19 C -0.159 4.159 20 C -0.050 4.050 21 C -0.051 4.051 22 C -0.053 4.053 23 N -0.137 5.137 24 N -0.044 5.044 25 N -0.075 5.075 26 H 0.329 0.671 27 N -0.148 5.148 28 C 0.005 3.995 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.247 0.753 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.219 10.351 6.751 14.312 hybrid contribution 0.719 0.991 0.857 1.495 sum 7.938 11.343 7.608 15.797 Atomic orbital electron populations 1.21507 0.96723 0.98603 1.01689 1.22034 0.96343 0.98883 1.00729 1.18642 0.93655 0.88929 0.82503 0.95049 1.22008 1.32327 1.18157 0.91295 0.92346 1.25674 0.95627 0.95403 1.00970 1.70806 1.22943 1.26439 1.33832 0.83625 0.75942 0.75560 0.75775 1.20760 1.21260 1.21576 1.55375 1.28300 1.70501 1.31076 1.01979 0.73368 0.73898 0.73127 1.93545 1.70834 1.72705 1.59400 1.93569 1.81823 1.35682 1.83984 1.31189 1.20015 1.07368 1.16773 1.21187 0.90715 1.00937 0.88323 1.21217 0.99472 0.93407 1.01783 1.21391 0.96367 0.94970 0.92299 1.17212 0.96630 0.84735 1.06553 1.23600 0.86454 0.96115 0.99132 1.76151 1.24159 0.95451 1.17920 1.78921 0.96751 1.15479 1.13202 1.47708 1.10892 1.08715 1.40181 0.67100 1.74896 1.26298 0.91164 1.22410 1.20858 0.97188 0.91440 0.89966 0.94278 0.91856 0.95285 0.90750 0.94054 0.91688 0.75252 0.83594 0.84184 0.84417 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.48 37.16 0.35 -2.21 16 2 C -0.14 -3.08 5.58 -26.73 -0.15 -3.22 16 3 C 0.27 5.97 2.10 -69.08 -0.14 5.82 16 4 H 0.03 0.73 6.60 -51.93 -0.34 0.38 16 5 C -0.60 -14.77 7.54 -34.44 -0.26 -15.03 16 6 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 7 C 0.03 0.74 5.24 -17.82 -0.09 0.65 16 8 N -0.90 -24.52 12.83 55.43 0.71 -23.81 16 9 Si 1.06 23.42 29.91 -169.99 -5.08 18.33 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 13 N -1.09 -21.06 4.76 -5.88 -0.03 -21.08 16 14 S 2.69 49.08 5.65 -107.50 -0.61 48.47 16 15 O -0.97 -18.91 17.27 -57.17 -0.99 -19.90 16 16 O -0.96 -19.24 16.61 -57.17 -0.95 -20.19 16 17 C -0.67 -11.19 5.79 -39.63 -0.23 -11.42 16 18 C 0.01 0.13 8.88 -39.53 -0.35 -0.22 16 19 C -0.14 -1.81 10.03 -39.63 -0.40 -2.21 16 20 C -0.03 -0.38 9.70 -39.26 -0.38 -0.76 16 21 C -0.05 -0.69 5.88 -104.89 -0.62 -1.31 16 22 C 0.23 3.19 7.94 -156.30 -1.24 1.95 16 23 N -0.26 -3.88 12.24 32.16 0.39 -3.49 16 24 N -0.05 -0.58 13.47 60.35 0.81 0.24 16 25 N -0.23 -2.02 7.90 60.35 0.48 -1.54 16 26 H 0.47 1.66 8.96 -340.36 -3.05 -1.39 16 27 N -0.30 -3.41 12.08 32.17 0.39 -3.02 16 28 C 0.03 0.43 9.18 -39.26 -0.36 0.07 16 29 H 0.04 0.72 7.19 -51.93 -0.37 0.35 16 30 H 0.06 1.34 7.40 -51.93 -0.38 0.96 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.77 6.21 -51.93 -0.32 1.44 16 33 H 0.04 0.88 7.72 -51.92 -0.40 0.47 16 34 H 0.27 7.25 6.08 -40.82 -0.25 7.00 16 35 H 0.41 7.38 8.46 -34.47 -0.29 7.09 16 36 H 0.15 2.15 7.60 -52.49 -0.40 1.75 16 37 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.14 1.41 7.88 -52.49 -0.41 0.99 16 39 H 0.15 2.37 7.44 -52.49 -0.39 1.98 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -32.77 346.94 -10.19 -42.95 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.67 Total: 5.71 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -3.87 Total: -27.90 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 2.75 Total: -52.71 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -1.94 Total: -40.09 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.08 Total: 18.33 kcal Atomic # 16 Polarization: 49.08 SS G_CDS: -0.61 Total: 48.47 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.77 -10.19 -42.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604014066.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.606 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds