Wall clock time and date at job start Tue Mar 31 2020 19:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47311 * 2 1 4 4 H 1.08998 * 109.47593 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47219 * 299.94139 * 3 2 1 6 6 H 1.07991 * 120.00168 * 115.89715 * 5 3 2 7 7 C 1.37883 * 119.99521 * 295.89838 * 5 3 2 8 8 N 1.31514 * 119.99785 * 353.47489 * 7 5 3 9 9 Si 1.86801 * 119.99808 * 173.47939 * 7 5 3 10 10 H 1.48499 * 109.47021 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.46724 * 299.99463 * 9 7 5 12 12 H 1.48496 * 109.47032 * 59.99653 * 9 7 5 13 13 N 1.46508 * 109.47234 * 59.93821 * 3 2 1 14 14 S 1.65602 * 120.00186 * 95.70391 * 13 3 2 15 15 O 1.42090 * 106.40049 * 178.00434 * 14 13 3 16 16 O 1.42099 * 106.39986 * 310.92595 * 14 13 3 17 17 C 1.76196 * 107.21346 * 64.46126 * 14 13 3 18 18 C 1.38339 * 119.94537 * 269.72462 * 17 14 13 19 19 C 1.38289 * 120.23752 * 179.73161 * 18 17 14 20 20 C 1.38058 * 120.11804 * 0.54510 * 19 18 17 21 21 C 1.39281 * 119.87871 * 359.73522 * 20 19 18 22 22 C 1.48463 * 120.11618 * 180.02562 * 21 20 19 23 23 N 1.34052 * 126.67218 * 179.66232 * 22 21 20 24 24 N 1.28983 * 107.26287 * 179.86423 * 23 22 21 25 25 N 1.28727 * 108.95007 * 0.40104 * 24 23 22 26 26 H 0.97000 * 125.34566 * 179.77992 * 25 24 23 27 27 N 1.28877 * 109.31316 * 359.74501 * 25 24 23 28 28 C 1.38012 * 119.93808 * 90.00673 * 17 14 13 29 29 H 1.08997 * 109.47110 * 305.00616 * 1 2 3 30 30 H 1.09006 * 109.46711 * 65.00787 * 1 2 3 31 31 H 1.08997 * 109.47302 * 185.00151 * 1 2 3 32 32 H 1.08998 * 109.47457 * 239.99841 * 2 1 3 33 33 H 1.09007 * 109.47083 * 119.99410 * 2 1 3 34 34 H 0.96997 * 120.00472 * 355.01662 * 8 7 5 35 35 H 0.97003 * 119.99803 * 275.71297 * 13 3 2 36 36 H 1.07995 * 119.87917 * 359.97438 * 18 17 14 37 37 H 1.08001 * 119.94383 * 180.27679 * 19 18 17 38 38 H 1.07996 * 120.05864 * 179.75175 * 20 19 18 39 39 H 1.08001 * 120.05714 * 359.96901 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0005 5 6 1.5389 2.1525 -1.2312 6 1 0.8645 2.9904 -1.1345 7 6 1.9416 1.7323 -2.4812 8 7 2.8598 0.7979 -2.5966 9 14 1.1828 2.4902 -4.0106 10 1 1.7826 1.8708 -5.2197 11 1 -0.2828 2.2510 -4.0066 12 1 1.4459 3.9517 -4.0214 13 7 1.5505 2.1336 1.1955 14 16 2.5055 2.2312 2.5449 15 8 1.7760 2.9913 3.4984 16 8 2.9788 0.9154 2.7975 17 6 3.9174 3.1940 2.1159 18 6 5.0496 2.5751 1.6170 19 6 6.1591 3.3255 1.2731 20 6 6.1463 4.6963 1.4369 21 6 5.0111 5.3238 1.9442 22 6 4.9913 6.7977 2.1219 23 7 3.9736 7.5340 2.5900 24 7 4.3599 8.7647 2.5899 25 7 5.5632 8.8251 2.1368 26 1 6.0833 9.6372 2.0321 27 7 5.9689 7.6372 1.8449 28 6 3.8939 4.5637 2.2837 29 1 -0.3633 0.5895 0.8417 30 1 -0.3633 0.4342 -0.9315 31 1 -0.3634 -1.0237 0.0896 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.3057 0.4557 -1.8060 35 1 0.6669 2.5339 1.1966 36 1 5.0655 1.5026 1.4919 37 1 7.0389 2.8379 0.8799 38 1 7.0147 5.2809 1.1718 39 1 3.0109 5.0454 2.6771 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604014066.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:07 Heat of formation + Delta-G solvation = 44.528878 kcal Electronic energy + Delta-G solvation = -26988.850101 eV Core-core repulsion = 23060.395238 eV Total energy + Delta-G solvation = -3928.454862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.56197 -40.35196 -38.51183 -37.94829 -36.96525 -35.55536 -34.78665 -34.14155 -32.45945 -32.12323 -31.75965 -27.75594 -26.00728 -25.75425 -25.55564 -24.07371 -23.00823 -21.93179 -20.53592 -20.21050 -19.37114 -18.92400 -18.39053 -18.23154 -17.17568 -16.98382 -16.37668 -16.07111 -15.68894 -15.44439 -15.18756 -15.10649 -14.83981 -14.76876 -14.52265 -14.30199 -13.51883 -13.44766 -13.26120 -13.21318 -13.15712 -12.85188 -12.62292 -12.60945 -12.52607 -12.35867 -12.26161 -12.14278 -12.03689 -11.92132 -11.86024 -11.67726 -10.82877 -10.48796 -10.39487 -10.03816 -9.93472 -8.48260 -6.21913 -0.65185 -0.49391 -0.17903 0.08624 1.10084 1.33808 1.60810 1.65153 1.83954 2.04889 2.40199 2.50064 2.63300 2.76506 3.02927 3.27426 3.34758 3.73270 3.83091 3.92099 4.15228 4.25289 4.30296 4.36420 4.47198 4.49849 4.65256 4.71934 4.74646 4.89139 5.08221 5.12022 5.13435 5.29830 5.42432 5.55338 5.58282 5.61482 5.64009 5.95220 6.26283 6.43486 6.69888 7.01463 7.51537 8.88225 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.004278 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.477903 B = 6543.375276 C = 7693.878165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.139 4.139 3 C 0.271 3.729 4 H 0.024 0.976 5 C -0.599 4.599 6 H 0.056 0.944 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 1.101 2.899 10 H -0.288 1.288 11 H -0.273 1.273 12 H -0.279 1.279 13 N -1.093 6.093 14 S 2.704 3.296 15 O -0.988 6.988 16 O -0.982 6.982 17 C -0.680 4.680 18 C -0.012 4.012 19 C -0.132 4.132 20 C -0.020 4.020 21 C -0.051 4.051 22 C 0.209 3.791 23 N -0.298 5.298 24 N -0.053 5.053 25 N -0.195 5.195 26 H 0.497 0.503 27 N -0.284 5.284 28 C 0.010 3.990 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.418 0.582 36 H 0.146 0.854 37 H 0.176 0.824 38 H 0.170 0.830 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.643 11.884 7.091 16.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.179 4.179 3 C 0.165 3.835 4 H 0.041 0.959 5 C -0.638 4.638 6 H 0.074 0.926 7 C -0.213 4.213 8 N -0.566 5.566 9 Si 0.925 3.075 10 H -0.214 1.214 11 H -0.199 1.199 12 H -0.205 1.205 13 N -0.853 5.853 14 S 2.795 3.205 15 O -0.979 6.979 16 O -0.972 6.972 17 C -0.768 4.768 18 C -0.032 4.032 19 C -0.150 4.150 20 C -0.040 4.040 21 C -0.055 4.055 22 C -0.071 4.071 23 N -0.170 5.170 24 N -0.047 5.047 25 N -0.047 5.047 26 H 0.356 0.644 27 N -0.137 5.137 28 C -0.012 4.012 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.253 0.747 36 H 0.164 0.836 37 H 0.193 0.807 38 H 0.187 0.813 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.349 11.955 6.444 15.942 hybrid contribution 0.480 0.640 1.015 1.293 sum 8.829 12.595 7.459 17.094 Atomic orbital electron populations 1.21472 0.95231 1.00051 1.01467 1.21984 0.97721 0.98417 0.99782 1.18440 0.93191 0.89169 0.82742 0.95872 1.22237 1.31572 1.17821 0.92166 0.92608 1.26717 0.95600 0.95384 1.03634 1.70886 1.24301 1.27890 1.33541 0.83110 0.75995 0.75380 0.73006 1.21421 1.19884 1.20487 1.55241 1.29071 1.70651 1.30357 1.01276 0.73355 0.73410 0.72482 1.93520 1.71722 1.72862 1.59768 1.93533 1.82118 1.37256 1.84277 1.30779 1.19664 1.07486 1.18833 1.21392 0.91367 1.01361 0.89109 1.21624 0.99595 0.93513 1.00275 1.21772 0.96534 0.95093 0.90582 1.17373 0.96678 0.85305 1.06186 1.23543 0.87035 0.96149 1.00331 1.76139 1.25280 0.96362 1.19201 1.78865 0.97668 1.14580 1.13634 1.47788 1.10155 1.09030 1.37678 0.64360 1.74845 1.25460 0.91537 1.21810 1.20868 0.97972 0.91318 0.91033 0.92953 0.93265 0.93347 0.92851 0.93745 0.92507 0.74660 0.83649 0.80681 0.81272 0.83828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 9.48 71.98 0.68 -4.26 16 2 C -0.14 -6.16 5.58 30.59 0.17 -5.99 16 3 C 0.27 12.18 2.10 44.24 0.09 12.27 16 4 H 0.02 1.10 6.60 -2.39 -0.02 1.08 16 5 C -0.60 -29.58 7.54 25.60 0.19 -29.38 16 6 H 0.06 2.74 7.82 -2.91 -0.02 2.71 16 7 C -0.01 -0.65 5.24 84.66 0.44 -0.20 16 8 N -0.93 -50.82 12.83 21.45 0.28 -50.54 16 9 Si 1.10 46.74 29.91 68.60 2.05 48.79 16 10 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 12 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 13 N -1.09 -42.58 4.76 -172.51 -0.82 -43.40 16 14 S 2.70 100.34 5.65 -56.49 -0.32 100.02 16 15 O -0.99 -38.96 17.27 -128.00 -2.21 -41.18 16 16 O -0.98 -39.97 16.61 -128.00 -2.13 -42.10 16 17 C -0.68 -22.91 5.79 22.24 0.13 -22.78 16 18 C -0.01 -0.37 8.88 22.31 0.20 -0.17 16 19 C -0.13 -3.11 10.03 22.24 0.22 -2.88 16 20 C -0.02 -0.45 9.70 22.48 0.22 -0.24 16 21 C -0.05 -1.44 5.88 -20.04 -0.12 -1.56 16 22 C 0.21 5.57 7.94 137.38 1.09 6.66 16 23 N -0.30 -8.51 12.24 -52.18 -0.64 -9.15 16 24 N -0.05 -1.17 13.47 37.02 0.50 -0.67 16 25 N -0.19 -2.92 7.90 37.02 0.29 -2.63 16 26 H 0.50 1.88 8.96 -347.53 -3.12 -1.23 16 27 N -0.28 -5.77 12.08 -52.13 -0.63 -6.40 16 28 C 0.01 0.31 9.18 22.48 0.21 0.52 16 29 H 0.05 1.89 7.19 -2.39 -0.02 1.88 16 30 H 0.05 2.06 7.40 -2.38 -0.02 2.05 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 2.58 6.21 -2.39 -0.01 2.57 16 33 H 0.04 1.90 7.72 -2.38 -0.02 1.88 16 34 H 0.26 14.40 6.08 -92.71 -0.56 13.84 16 35 H 0.42 15.04 8.46 -96.74 -0.82 14.22 16 36 H 0.15 4.31 7.60 -2.91 -0.02 4.29 16 37 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 38 H 0.17 2.77 7.88 -2.91 -0.02 2.75 16 39 H 0.14 4.69 7.44 -2.91 -0.02 4.67 16 Total: -1.00 -69.97 346.94 -2.69 -72.66 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -2.59 Total: 22.59 kcal Atomic # 6 Polarization: -51.54 SS G_CDS: 3.53 Total: -48.01 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -1.02 Total: -112.78 kcal Atomic # 8 Polarization: -78.93 SS G_CDS: -4.34 Total: -83.27 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.05 Total: 48.79 kcal Atomic # 16 Polarization: 100.34 SS G_CDS: -0.32 Total: 100.02 kcal Total: -69.97 -2.69 -72.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604014066.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.186 kcal (2) G-P(sol) polarization free energy of solvation -69.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds