Wall clock time and date at job start Tue Mar 31 2020 19:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 H 1.09002 * 109.46851 * 305.18314 * 3 2 1 5 5 C 1.50704 * 109.46996 * 185.18639 * 3 2 1 6 6 H 1.08000 * 119.99549 * 239.99495 * 5 3 2 7 7 C 1.37877 * 120.00249 * 59.99873 * 5 3 2 8 8 N 1.31513 * 119.99961 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47168 * 59.99349 * 9 7 5 11 11 H 1.48504 * 109.46709 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46623 * 299.99706 * 9 7 5 13 13 N 1.46497 * 109.47474 * 65.18330 * 3 2 1 14 14 S 1.65596 * 120.00145 * 215.40591 * 13 3 2 15 15 O 1.42102 * 106.40120 * 309.84998 * 14 13 3 16 16 O 1.42099 * 106.40546 * 176.92820 * 14 13 3 17 17 C 1.76205 * 107.21840 * 63.38600 * 14 13 3 18 18 C 1.38332 * 119.94114 * 264.43554 * 17 14 13 19 19 C 1.38298 * 120.23600 * 179.97438 * 18 17 14 20 20 C 1.38049 * 120.11232 * 0.02562 * 19 18 17 21 21 C 1.39272 * 119.88656 * 359.97438 * 20 19 18 22 22 C 1.48470 * 120.11669 * 180.02562 * 21 20 19 23 23 N 1.34052 * 126.66969 * 179.68768 * 22 21 20 24 24 N 1.28985 * 107.26313 * 179.83597 * 23 22 21 25 25 N 1.28723 * 108.94488 * 0.43471 * 24 23 22 26 26 H 0.97008 * 125.34400 * 179.73994 * 25 24 23 27 27 N 1.28867 * 109.31914 * 359.72513 * 25 24 23 28 28 C 1.38012 * 119.93908 * 84.41616 * 17 14 13 29 29 H 1.09004 * 109.46511 * 184.40056 * 1 2 3 30 30 H 1.08998 * 109.47271 * 304.39882 * 1 2 3 31 31 H 1.08999 * 109.46894 * 64.40219 * 1 2 3 32 32 H 1.08994 * 109.47340 * 239.99554 * 2 1 3 33 33 H 1.09006 * 109.47506 * 119.99795 * 2 1 3 34 34 H 0.96998 * 120.00090 * 180.02562 * 8 7 5 35 35 H 0.97004 * 119.99509 * 35.40526 * 13 3 2 36 36 H 1.07999 * 119.88186 * 0.02562 * 18 17 14 37 37 H 1.07996 * 119.94017 * 180.02562 * 19 18 17 38 38 H 1.08007 * 120.05458 * 180.27092 * 20 19 18 39 39 H 1.08004 * 120.05856 * 0.04022 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9824 -0.8400 5 6 3.5415 1.4444 -0.1284 6 1 4.1492 1.8883 0.6463 7 6 4.1396 0.8797 -1.2350 8 7 3.3997 0.3389 -2.1782 9 14 6.0008 0.8815 -1.3938 10 1 6.5960 0.1456 -0.2495 11 1 6.3898 0.2184 -2.6644 12 1 6.4962 2.2815 -1.3935 13 7 1.6562 2.0962 1.2536 14 16 1.2499 3.7015 1.2597 15 8 2.2924 4.3819 0.5745 16 8 0.8627 4.0124 2.5911 17 6 -0.1954 3.8775 0.2673 18 6 -0.0796 4.2372 -1.0634 19 6 -1.2099 4.3766 -1.8481 20 6 -2.4605 4.1575 -1.3062 21 6 -2.5828 3.7951 0.0330 22 6 -3.9253 3.5577 0.6210 23 7 -4.1940 3.2004 1.8847 24 7 -5.4757 3.1007 1.9900 25 7 -6.0108 3.3701 0.8507 26 1 -6.9623 3.3626 0.6618 27 7 -5.0844 3.6517 0.0005 28 6 -1.4409 3.6558 0.8189 29 1 -0.3632 -1.0247 0.0789 30 1 -0.3634 0.5806 0.8479 31 1 -0.3633 0.4440 -0.9268 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8204 -0.0587 -2.9565 35 1 1.6402 1.5886 2.0801 36 1 0.8970 4.4091 -1.4913 37 1 -1.1139 4.6572 -2.8865 38 1 -3.3424 4.2623 -1.9209 39 1 -1.5302 3.3753 1.8580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604014069.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:12 Heat of formation + Delta-G solvation = 72.580497 kcal Electronic energy + Delta-G solvation = -27089.921179 eV Core-core repulsion = 23162.682726 eV Total energy + Delta-G solvation = -3927.238453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.64740 -39.22450 -36.64263 -35.92766 -35.20079 -34.60805 -33.79901 -32.17063 -31.28864 -30.68441 -30.61235 -26.61673 -25.04175 -24.67282 -23.05475 -22.88698 -21.92664 -20.18928 -19.50638 -18.88824 -17.69469 -17.33447 -16.93872 -16.41771 -15.88792 -15.63924 -15.18578 -14.87291 -14.47557 -14.17783 -13.75014 -13.62131 -13.34768 -13.02433 -12.95591 -12.56126 -12.22849 -11.89561 -11.63060 -11.58006 -11.56054 -11.44571 -11.34039 -11.28802 -11.20507 -11.17075 -10.93532 -10.76068 -10.53198 -10.21075 -9.83711 -9.79985 -9.70372 -9.34047 -8.83002 -8.41828 -8.24362 -6.06410 -4.12741 0.50863 0.85799 1.04546 1.13725 2.02008 2.16252 3.34353 3.37437 3.42599 3.46493 3.47445 3.83095 4.01222 4.33499 4.44812 4.72351 4.89506 4.94162 5.05232 5.22782 5.23485 5.34329 5.50725 5.60200 5.83633 6.06996 6.09918 6.14638 6.16952 6.18891 6.25343 6.31332 6.50300 6.72042 6.79406 6.93247 7.10451 7.57437 7.64932 7.89133 7.94572 8.09561 8.24919 8.90594 9.53409 10.97817 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.017656 B = 0.003574 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.459206 B = 7831.584922 C = 8090.035627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.281 3.719 4 H 0.042 0.958 5 C -0.520 4.520 6 H 0.065 0.935 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.274 1.274 13 N -1.099 6.099 14 S 2.688 3.312 15 O -0.944 6.944 16 O -0.980 6.980 17 C -0.670 4.670 18 C 0.010 3.990 19 C -0.142 4.142 20 C -0.032 4.032 21 C -0.049 4.049 22 C 0.227 3.773 23 N -0.265 5.265 24 N -0.048 5.048 25 N -0.230 5.230 26 H 0.475 0.525 27 N -0.297 5.297 28 C 0.025 3.975 29 H 0.035 0.965 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.407 0.593 36 H 0.152 0.848 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.987 4.972 0.822 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.177 3.823 4 H 0.060 0.940 5 C -0.560 4.560 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.532 5.532 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.860 5.860 14 S 2.775 3.225 15 O -0.934 6.934 16 O -0.971 6.971 17 C -0.754 4.754 18 C -0.009 4.009 19 C -0.161 4.161 20 C -0.053 4.053 21 C -0.054 4.054 22 C -0.052 4.052 23 N -0.138 5.138 24 N -0.044 5.044 25 N -0.075 5.075 26 H 0.329 0.671 27 N -0.149 5.149 28 C 0.004 3.996 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.241 0.759 36 H 0.170 0.830 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.991 5.500 1.368 17.911 hybrid contribution -0.113 -0.493 -0.831 0.973 sum -17.104 5.007 0.537 17.829 Atomic orbital electron populations 1.21843 0.99044 0.99475 1.00250 1.21881 0.91884 0.99445 1.03396 1.18563 0.94826 0.90235 0.78707 0.94025 1.21503 0.91260 1.37417 1.05780 0.91723 1.24884 0.98457 0.94960 0.95480 1.69827 1.35104 1.38706 1.09593 0.86581 0.85336 0.78502 0.77194 1.20257 1.21350 1.19955 1.55522 1.82856 1.29433 1.18231 1.02069 0.73688 0.73740 0.73001 1.93608 1.51932 1.72566 1.75324 1.93537 1.84208 1.83823 1.35483 1.31364 1.18315 1.15535 1.10213 1.21305 1.00552 0.87986 0.91107 1.21240 0.91714 1.02341 1.00762 1.21380 0.98534 0.92357 0.92980 1.17211 0.86262 1.07677 0.94217 1.23625 0.93258 1.00220 0.88135 1.76151 1.03673 1.16966 1.16963 1.78925 1.02938 1.14644 1.07868 1.47710 1.12025 1.43175 1.04617 0.67116 1.74894 0.97289 1.21926 1.20768 1.20849 0.89606 0.89481 0.99676 0.94590 0.94226 0.93824 0.87574 0.93970 0.92692 0.75904 0.83033 0.84237 0.84549 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.85 37.16 0.37 -2.32 16 2 C -0.13 -2.68 5.37 -26.73 -0.14 -2.83 16 3 C 0.28 6.32 2.16 -69.08 -0.15 6.18 16 4 H 0.04 0.98 7.43 -51.93 -0.39 0.60 16 5 C -0.52 -13.51 8.84 -34.44 -0.30 -13.81 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -23.64 11.29 55.43 0.63 -23.01 16 9 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 N -1.10 -21.23 4.84 -5.88 -0.03 -21.26 16 14 S 2.69 50.79 5.64 -107.50 -0.61 50.18 16 15 O -0.94 -20.80 16.94 -57.17 -0.97 -21.76 16 16 O -0.98 -19.39 17.43 -57.17 -1.00 -20.39 16 17 C -0.67 -10.96 5.69 -39.63 -0.23 -11.18 16 18 C 0.01 0.16 9.18 -39.52 -0.36 -0.21 16 19 C -0.14 -1.74 10.04 -39.63 -0.40 -2.14 16 20 C -0.03 -0.38 9.70 -39.27 -0.38 -0.76 16 21 C -0.05 -0.68 5.88 -104.89 -0.62 -1.30 16 22 C 0.23 3.01 7.94 -156.30 -1.24 1.77 16 23 N -0.26 -3.69 12.23 32.16 0.39 -3.30 16 24 N -0.05 -0.55 13.47 60.35 0.81 0.26 16 25 N -0.23 -1.88 7.90 60.35 0.48 -1.40 16 26 H 0.47 1.40 8.96 -340.37 -3.05 -1.65 16 27 N -0.30 -3.21 12.08 32.17 0.39 -2.82 16 28 C 0.03 0.38 9.17 -39.26 -0.36 0.02 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.66 7.64 -51.93 -0.40 0.26 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.11 2.55 5.95 -51.93 -0.31 2.24 16 33 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.41 6.97 8.84 -34.47 -0.30 6.66 16 36 H 0.15 2.32 7.49 -52.49 -0.39 1.93 16 37 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.14 1.29 7.88 -52.48 -0.41 0.88 16 39 H 0.15 2.21 7.58 -52.48 -0.40 1.81 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -32.92 352.18 -10.41 -43.34 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.89 Total: 4.05 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -3.91 Total: -25.00 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 2.67 Total: -51.53 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -1.96 Total: -42.15 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 50.79 SS G_CDS: -0.61 Total: 50.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.92 -10.41 -43.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604014069.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.919 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds