Wall clock time and date at job start Tue Mar 31 2020 19:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 H 1.09002 * 109.46851 * 305.18314 * 3 2 1 5 5 C 1.50704 * 109.46996 * 185.18639 * 3 2 1 6 6 H 1.08000 * 119.99549 * 239.99495 * 5 3 2 7 7 C 1.37877 * 120.00249 * 59.99873 * 5 3 2 8 8 N 1.31513 * 119.99961 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47168 * 59.99349 * 9 7 5 11 11 H 1.48504 * 109.46709 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46623 * 299.99706 * 9 7 5 13 13 N 1.46497 * 109.47474 * 65.18330 * 3 2 1 14 14 S 1.65596 * 120.00145 * 215.40591 * 13 3 2 15 15 O 1.42102 * 106.40120 * 309.84998 * 14 13 3 16 16 O 1.42099 * 106.40546 * 176.92820 * 14 13 3 17 17 C 1.76205 * 107.21840 * 63.38600 * 14 13 3 18 18 C 1.38332 * 119.94114 * 264.43554 * 17 14 13 19 19 C 1.38298 * 120.23600 * 179.97438 * 18 17 14 20 20 C 1.38049 * 120.11232 * 0.02562 * 19 18 17 21 21 C 1.39272 * 119.88656 * 359.97438 * 20 19 18 22 22 C 1.48470 * 120.11669 * 180.02562 * 21 20 19 23 23 N 1.34052 * 126.66969 * 179.68768 * 22 21 20 24 24 N 1.28985 * 107.26313 * 179.83597 * 23 22 21 25 25 N 1.28723 * 108.94488 * 0.43471 * 24 23 22 26 26 H 0.97008 * 125.34400 * 179.73994 * 25 24 23 27 27 N 1.28867 * 109.31914 * 359.72513 * 25 24 23 28 28 C 1.38012 * 119.93908 * 84.41616 * 17 14 13 29 29 H 1.09004 * 109.46511 * 184.40056 * 1 2 3 30 30 H 1.08998 * 109.47271 * 304.39882 * 1 2 3 31 31 H 1.08999 * 109.46894 * 64.40219 * 1 2 3 32 32 H 1.08994 * 109.47340 * 239.99554 * 2 1 3 33 33 H 1.09006 * 109.47506 * 119.99795 * 2 1 3 34 34 H 0.96998 * 120.00090 * 180.02562 * 8 7 5 35 35 H 0.97004 * 119.99509 * 35.40526 * 13 3 2 36 36 H 1.07999 * 119.88186 * 0.02562 * 18 17 14 37 37 H 1.07996 * 119.94017 * 180.02562 * 19 18 17 38 38 H 1.08007 * 120.05458 * 180.27092 * 20 19 18 39 39 H 1.08004 * 120.05856 * 0.04022 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9824 -0.8400 5 6 3.5415 1.4444 -0.1284 6 1 4.1492 1.8883 0.6463 7 6 4.1396 0.8797 -1.2350 8 7 3.3997 0.3389 -2.1782 9 14 6.0008 0.8815 -1.3938 10 1 6.5960 0.1456 -0.2495 11 1 6.3898 0.2184 -2.6644 12 1 6.4962 2.2815 -1.3935 13 7 1.6562 2.0962 1.2536 14 16 1.2499 3.7015 1.2597 15 8 2.2924 4.3819 0.5745 16 8 0.8627 4.0124 2.5911 17 6 -0.1954 3.8775 0.2673 18 6 -0.0796 4.2372 -1.0634 19 6 -1.2099 4.3766 -1.8481 20 6 -2.4605 4.1575 -1.3062 21 6 -2.5828 3.7951 0.0330 22 6 -3.9253 3.5577 0.6210 23 7 -4.1940 3.2004 1.8847 24 7 -5.4757 3.1007 1.9900 25 7 -6.0108 3.3701 0.8507 26 1 -6.9623 3.3626 0.6618 27 7 -5.0844 3.6517 0.0005 28 6 -1.4409 3.6558 0.8189 29 1 -0.3632 -1.0247 0.0789 30 1 -0.3634 0.5806 0.8479 31 1 -0.3633 0.4440 -0.9268 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8204 -0.0587 -2.9565 35 1 1.6402 1.5886 2.0801 36 1 0.8970 4.4091 -1.4913 37 1 -1.1139 4.6572 -2.8865 38 1 -3.3424 4.2623 -1.9209 39 1 -1.5302 3.3753 1.8580 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604014069.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:11 Heat of formation + Delta-G solvation = 47.966339 kcal Electronic energy + Delta-G solvation = -27090.988529 eV Core-core repulsion = 23162.682726 eV Total energy + Delta-G solvation = -3928.305803 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.51646 -40.30199 -38.25375 -37.64179 -36.81728 -35.50461 -34.73389 -34.09654 -32.38308 -32.20572 -31.69695 -28.47583 -25.95191 -25.65896 -24.82036 -24.00640 -22.94476 -21.88972 -20.51422 -20.17190 -18.98750 -18.67377 -18.18977 -18.08209 -17.18154 -17.03721 -16.62344 -16.20400 -15.91598 -15.40161 -15.10354 -14.84112 -14.71120 -14.68377 -14.25948 -13.56242 -13.45899 -13.41963 -13.28645 -13.10237 -12.99863 -12.98183 -12.68436 -12.57072 -12.53689 -12.47691 -12.28988 -12.13745 -12.05483 -11.86409 -11.56901 -11.52423 -11.37295 -10.43733 -10.39518 -9.98032 -9.87524 -8.04980 -6.16759 -0.56258 -0.41089 -0.11864 0.13452 1.15906 1.38053 1.47065 1.48722 1.55844 2.18855 2.48699 2.50567 2.56137 2.88091 3.08575 3.21627 3.49555 3.80513 3.91677 3.98664 4.22357 4.32947 4.42017 4.50689 4.53082 4.63401 4.72615 4.79176 4.91052 4.97634 5.15007 5.16869 5.20276 5.37779 5.43470 5.59114 5.67405 5.73416 5.84777 6.06151 6.33116 6.48673 6.88991 7.06387 7.51094 8.96888 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.017656 B = 0.003574 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.459206 B = 7831.584922 C = 8090.035627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.287 3.713 4 H 0.031 0.969 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.025 3.975 8 N -0.907 5.907 9 Si 0.943 3.057 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.281 1.281 13 N -1.099 6.099 14 S 2.699 3.301 15 O -0.984 6.984 16 O -0.994 6.994 17 C -0.675 4.675 18 C -0.010 4.010 19 C -0.130 4.130 20 C -0.018 4.018 21 C -0.050 4.050 22 C 0.211 3.789 23 N -0.297 5.297 24 N -0.054 5.054 25 N -0.196 5.196 26 H 0.496 0.504 27 N -0.285 5.285 28 C 0.014 3.986 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.416 0.584 36 H 0.141 0.859 37 H 0.175 0.825 38 H 0.170 0.830 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.470 4.984 -0.201 20.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.182 3.818 4 H 0.049 0.951 5 C -0.581 4.581 6 H 0.068 0.932 7 C -0.175 4.175 8 N -0.546 5.546 9 Si 0.769 3.231 10 H -0.198 1.198 11 H -0.205 1.205 12 H -0.206 1.206 13 N -0.860 5.860 14 S 2.790 3.210 15 O -0.974 6.974 16 O -0.984 6.984 17 C -0.764 4.764 18 C -0.031 4.031 19 C -0.148 4.148 20 C -0.038 4.038 21 C -0.054 4.054 22 C -0.069 4.069 23 N -0.169 5.169 24 N -0.049 5.049 25 N -0.047 5.047 26 H 0.356 0.644 27 N -0.138 5.138 28 C -0.008 4.008 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.251 0.749 36 H 0.159 0.841 37 H 0.192 0.808 38 H 0.187 0.813 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.456 5.493 0.396 20.220 hybrid contribution 0.458 -0.447 -0.543 0.839 sum -18.998 5.046 -0.147 19.658 Atomic orbital electron populations 1.21735 0.96397 1.00868 1.00711 1.21714 0.94224 0.98006 1.02130 1.18312 0.92971 0.91108 0.79456 0.95141 1.21811 0.93269 1.37402 1.05618 0.93209 1.25458 1.01634 0.94936 0.95444 1.69914 1.36073 1.38937 1.09725 0.85850 0.81688 0.78033 0.77507 1.19811 1.20454 1.20630 1.55310 1.83445 1.29440 1.17787 1.01341 0.73891 0.73034 0.72700 1.93554 1.54528 1.73360 1.75950 1.93510 1.84500 1.83832 1.36556 1.30713 1.17009 1.18146 1.10494 1.21396 1.01442 0.89208 0.91014 1.21594 0.90681 1.00601 1.01941 1.21753 0.99484 0.90206 0.92356 1.17335 0.86129 1.07081 0.94844 1.23544 0.93615 1.01457 0.88261 1.76141 1.04812 1.18208 1.17771 1.78876 1.02295 1.15038 1.08642 1.47792 1.12901 1.40580 1.03471 0.64425 1.74845 0.96881 1.21318 1.20709 1.20833 0.89784 0.90308 0.99870 0.92810 0.92935 0.94059 0.90203 0.93800 0.92640 0.74903 0.84092 0.80784 0.81273 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 9.85 71.98 0.71 -4.18 16 2 C -0.12 -5.15 5.37 30.59 0.16 -4.99 16 3 C 0.29 13.17 2.16 44.25 0.10 13.26 16 4 H 0.03 1.48 7.43 -2.39 -0.02 1.46 16 5 C -0.54 -28.80 8.84 25.60 0.23 -28.57 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 7 C 0.03 1.35 5.29 84.65 0.45 1.80 16 8 N -0.91 -48.44 11.29 21.45 0.24 -48.20 16 9 Si 0.94 43.01 29.54 68.60 2.03 45.04 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 N -1.10 -43.46 4.84 -172.52 -0.83 -44.29 16 14 S 2.70 105.19 5.64 -56.49 -0.32 104.87 16 15 O -0.98 -45.21 16.94 -128.00 -2.17 -47.38 16 16 O -0.99 -40.30 17.43 -128.00 -2.23 -42.53 16 17 C -0.68 -22.15 5.69 22.24 0.13 -22.03 16 18 C -0.01 -0.31 9.18 22.31 0.20 -0.11 16 19 C -0.13 -2.84 10.04 22.24 0.22 -2.62 16 20 C -0.02 -0.37 9.70 22.47 0.22 -0.15 16 21 C -0.05 -1.27 5.88 -20.04 -0.12 -1.38 16 22 C 0.21 5.11 7.94 137.38 1.09 6.20 16 23 N -0.30 -7.85 12.23 -52.18 -0.64 -8.48 16 24 N -0.05 -1.10 13.47 37.02 0.50 -0.60 16 25 N -0.20 -2.60 7.90 37.02 0.29 -2.30 16 26 H 0.50 1.15 8.96 -347.53 -3.12 -1.96 16 27 N -0.28 -5.21 12.08 -52.13 -0.63 -5.84 16 28 C 0.01 0.41 9.17 22.48 0.21 0.61 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.05 1.68 7.64 -2.39 -0.02 1.67 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 3.87 5.95 -2.39 -0.01 3.85 16 33 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 35 H 0.42 14.54 8.84 -96.74 -0.86 13.68 16 36 H 0.14 4.45 7.49 -2.91 -0.02 4.42 16 37 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 38 H 0.17 2.38 7.88 -2.91 -0.02 2.36 16 39 H 0.14 4.34 7.58 -2.91 -0.02 4.31 16 Total: -1.00 -71.53 352.18 -3.01 -74.54 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -2.84 Total: 17.34 kcal Atomic # 6 Polarization: -45.75 SS G_CDS: 3.59 Total: -42.15 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -1.07 Total: -109.72 kcal Atomic # 8 Polarization: -85.51 SS G_CDS: -4.40 Total: -89.91 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 105.19 SS G_CDS: -0.32 Total: 104.87 kcal Total: -71.53 -3.01 -74.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604014069.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.505 kcal (2) G-P(sol) polarization free energy of solvation -71.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds