Wall clock time and date at job start Tue Mar 31 2020 20:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34231 * 116.99536 * 2 1 4 4 O 1.20822 * 120.00592 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99818 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.46859 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.46732 * 179.97438 * 6 5 3 8 8 C 1.36965 * 120.00063 * 264.85432 * 7 6 5 9 9 H 1.08000 * 119.99687 * 125.49178 * 8 7 6 10 10 C 1.38981 * 119.99834 * 305.48836 * 8 7 6 11 11 N 1.31404 * 119.99930 * 4.57408 * 10 8 7 12 12 Si 1.86801 * 120.00027 * 184.56942 * 10 8 7 13 13 H 1.48505 * 109.47179 * 0.02562 * 12 10 8 14 14 H 1.48491 * 109.47170 * 120.00090 * 12 10 8 15 15 H 1.48497 * 109.47269 * 240.00479 * 12 10 8 16 16 C 1.34780 * 120.00116 * 84.85257 * 7 6 5 17 17 O 1.21633 * 119.99959 * 3.54002 * 16 7 6 18 18 C 1.47424 * 120.00258 * 183.53381 * 16 7 6 19 19 C 1.37945 * 126.76316 * 172.45554 * 18 16 7 20 20 O 1.33616 * 108.38835 * 180.02562 * 19 18 16 21 21 C 1.34892 * 109.89062 * 359.97438 * 20 19 18 22 22 C 1.41675 * 125.67472 * 180.02562 * 21 20 19 23 23 C 1.35664 * 119.99995 * 359.97438 * 22 21 20 24 24 C 1.41379 * 119.99869 * 179.97438 * 23 22 21 25 25 O 1.21698 * 120.00093 * 0.02562 * 24 23 22 26 26 O 1.34988 * 119.99501 * 180.02562 * 24 23 22 27 27 C 1.36514 * 108.64641 * 359.72697 * 21 20 19 28 28 H 1.08997 * 109.46969 * 60.00648 * 1 2 3 29 29 H 1.09003 * 109.46788 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47836 * 300.00241 * 1 2 3 31 31 H 1.09001 * 109.47210 * 59.99422 * 5 3 2 32 32 H 1.09001 * 109.46612 * 299.99637 * 5 3 2 33 33 H 1.08990 * 109.47467 * 60.00066 * 6 5 3 34 34 H 1.08999 * 109.46740 * 299.99569 * 6 5 3 35 35 H 0.97003 * 119.99974 * 179.97438 * 11 10 8 36 36 H 1.07997 * 125.80281 * 359.97438 * 19 18 16 37 37 H 1.08000 * 119.99622 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.00383 * 0.02562 * 23 22 21 39 39 H 0.96707 * 113.99623 * 180.02562 * 26 24 23 40 40 H 1.08000 * 126.70203 * 180.26401 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0612 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 3.9999 2.7423 0.0011 7 7 5.4629 2.8190 0.0023 8 6 6.1403 2.9609 1.1842 9 1 6.9181 2.2598 1.4483 10 6 5.8267 4.0073 2.0435 11 7 4.8215 4.8068 1.7658 12 14 6.8340 4.2770 3.5933 13 1 7.9021 3.2485 3.6748 14 1 7.4501 5.6276 3.5544 15 1 5.9512 4.1697 4.7825 16 6 6.1423 2.7498 -1.1597 17 8 5.5391 2.6886 -2.2141 18 6 7.6165 2.7485 -1.1527 19 6 8.4471 2.5386 -2.2339 20 8 9.7132 2.6167 -1.8142 21 6 9.7429 2.8721 -0.4900 22 6 10.9116 3.0217 0.2967 23 6 12.1352 2.9080 -0.2780 24 6 13.3015 3.0579 0.5069 25 8 13.2078 3.2884 1.6982 26 8 14.5190 2.9453 -0.0651 27 6 8.4593 2.9690 -0.0353 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9564 0.7806 -0.8891 32 1 3.9556 0.7811 0.8909 33 1 3.6099 3.2361 0.8910 34 1 3.6105 3.2365 -0.8890 35 1 4.6024 5.5368 2.3657 36 1 8.1282 2.3435 -3.2470 37 1 10.8284 3.2262 1.3539 38 1 12.2185 2.7039 -1.3353 39 1 15.2553 3.0627 0.5508 40 1 8.1472 3.1711 0.9787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604304196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:38 Heat of formation + Delta-G solvation = -168.594790 kcal Electronic energy + Delta-G solvation = -28406.538181 eV Core-core repulsion = 23961.503210 eV Total energy + Delta-G solvation = -4445.034971 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.34194 -40.22186 -40.09426 -38.58175 -36.24059 -36.21511 -35.10628 -34.21984 -32.92563 -32.11913 -30.54839 -29.13215 -27.57379 -25.47038 -24.77720 -24.35179 -22.01833 -21.08276 -20.55283 -19.84092 -18.91709 -18.35102 -17.39958 -17.19535 -16.80620 -16.29960 -16.23562 -15.99563 -15.83433 -15.74275 -15.54442 -14.67900 -14.62279 -14.01762 -13.84582 -13.75586 -13.58725 -13.08374 -12.61114 -12.52433 -12.33479 -12.25411 -12.07222 -11.87121 -11.76752 -11.67875 -11.36397 -11.19060 -10.80133 -10.67723 -10.64943 -10.58191 -10.49361 -10.17279 -10.07037 -9.31660 -9.20278 -8.84780 -7.88083 -7.54362 -6.53780 -4.47748 0.39292 1.96820 2.57126 2.62233 2.99123 3.01975 3.09028 3.09768 3.12714 3.29327 3.32004 3.89211 4.28419 4.49527 4.76333 4.98920 5.07102 5.20356 5.24173 5.27541 5.35674 5.38113 5.55489 5.60360 5.74840 5.84009 5.93135 6.03239 6.18027 6.20091 6.29765 6.35110 6.42741 6.68199 6.78744 6.83471 7.14743 7.25976 7.33068 7.83888 7.84427 8.11251 8.14486 8.83142 9.22749 9.68418 10.47514 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.014522 B = 0.002952 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.645824 B = 9484.265313 C =10711.238729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.504 6.504 5 C -0.126 4.126 6 C 0.133 3.867 7 N -0.429 5.429 8 C -0.362 4.362 9 H 0.095 0.905 10 C 0.055 3.945 11 N -0.851 5.851 12 Si 0.903 3.097 13 H -0.261 1.261 14 H -0.274 1.274 15 H -0.276 1.276 16 C 0.548 3.452 17 O -0.598 6.598 18 C -0.199 4.199 19 C 0.044 3.956 20 O -0.165 6.165 21 C -0.077 4.077 22 C 0.071 3.929 23 C -0.246 4.246 24 C 0.518 3.482 25 O -0.531 6.531 26 O -0.510 6.510 27 C -0.079 4.079 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.275 0.725 36 H 0.218 0.782 37 H 0.160 0.840 38 H 0.139 0.861 39 H 0.405 0.595 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.018 -6.592 -1.696 9.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.391 6.391 5 C -0.165 4.165 6 C 0.010 3.990 7 N -0.146 5.146 8 C -0.489 4.489 9 H 0.112 0.888 10 C -0.154 4.154 11 N -0.484 5.484 12 Si 0.728 3.272 13 H -0.185 1.185 14 H -0.199 1.199 15 H -0.201 1.201 16 C 0.337 3.663 17 O -0.485 6.485 18 C -0.203 4.203 19 C -0.028 4.028 20 O -0.061 6.061 21 C -0.124 4.124 22 C 0.053 3.947 23 C -0.265 4.265 24 C 0.367 3.633 25 O -0.424 6.424 26 O -0.320 6.320 27 C -0.098 4.098 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.234 0.766 37 H 0.177 0.823 38 H 0.157 0.843 39 H 0.261 0.739 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 5.266 -6.153 -2.236 8.402 hybrid contribution 0.471 0.354 1.243 1.376 sum 5.737 -5.799 -0.993 8.218 Atomic orbital electron populations 1.23169 0.77323 1.03047 1.02357 1.86538 1.22782 1.34408 1.84660 1.24046 0.92357 0.80902 0.71781 1.90657 1.67258 1.36210 1.44979 1.21937 0.85995 1.03387 1.05174 1.21209 0.82198 0.90524 1.05096 1.43029 1.04218 1.62611 1.04764 1.19494 1.20577 1.11913 0.96925 0.88754 1.25674 0.95806 0.94702 0.99186 1.69785 1.25221 1.16103 1.37300 0.86250 0.80248 0.79261 0.81464 1.18484 1.19905 1.20102 1.17574 0.85035 0.79473 0.84171 1.90655 1.70022 1.56419 1.31387 1.20787 0.95877 1.10265 0.93335 1.24986 0.79339 0.98645 0.99834 1.83910 1.29243 1.69156 1.23748 1.19444 0.95444 1.15673 0.81862 1.20809 0.88549 0.86502 0.98849 1.21038 0.90007 1.13817 1.01647 1.19537 0.84272 0.73299 0.86192 1.90958 1.87950 1.46563 1.16946 1.85100 1.17157 1.84893 1.44879 1.23710 0.89282 0.94075 1.02721 0.92166 0.88614 0.92142 0.88449 0.87765 0.86915 0.91669 0.91481 0.76581 0.82310 0.84333 0.73888 0.78880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.74 10.57 -39.26 -0.41 -6.16 16 3 C 0.47 8.58 7.96 36.01 0.29 8.87 16 4 O -0.50 -10.62 15.73 -18.75 -0.29 -10.92 16 5 C -0.13 -2.36 6.10 -27.88 -0.17 -2.53 16 6 C 0.13 3.03 4.15 -4.04 -0.02 3.01 16 7 N -0.43 -9.90 2.45 -116.03 -0.28 -10.18 16 8 C -0.36 -8.11 6.36 -14.98 -0.10 -8.21 16 9 H 0.10 1.98 5.88 -52.49 -0.31 1.67 16 10 C 0.06 1.28 5.34 -17.46 -0.09 1.18 16 11 N -0.85 -21.29 11.43 55.50 0.63 -20.66 16 12 Si 0.90 17.64 29.03 -169.99 -4.93 12.71 16 13 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 14 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 15 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 16 C 0.55 12.45 7.60 -12.52 -0.10 12.36 16 17 O -0.60 -14.65 16.57 5.25 0.09 -14.57 16 18 C -0.20 -3.83 6.04 -104.95 -0.63 -4.46 16 19 C 0.04 0.70 11.95 30.63 0.37 1.07 16 20 O -0.17 -2.51 10.10 5.87 0.06 -2.45 16 21 C -0.08 -1.21 6.77 -38.89 -0.26 -1.47 16 22 C 0.07 0.98 9.37 -39.19 -0.37 0.62 16 23 C -0.25 -3.15 9.54 -39.31 -0.38 -3.53 16 24 C 0.52 6.66 8.04 31.93 0.26 6.92 16 25 O -0.53 -8.24 16.84 -19.42 -0.33 -8.56 16 26 O -0.51 -5.11 13.54 -41.29 -0.56 -5.67 16 27 C -0.08 -1.41 8.98 -38.89 -0.35 -1.76 16 28 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 32 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 33 H 0.11 2.79 5.99 -51.93 -0.31 2.48 16 34 H 0.06 1.61 7.49 -51.93 -0.39 1.22 16 35 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 36 H 0.22 2.76 8.06 -52.49 -0.42 2.34 16 37 H 0.16 2.09 7.46 -52.49 -0.39 1.70 16 38 H 0.14 1.65 7.70 -52.49 -0.40 1.25 16 39 H 0.41 2.25 8.98 45.56 0.41 2.65 16 40 H 0.19 3.57 4.38 -52.49 -0.23 3.34 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -31.09 361.29 -4.37 -35.46 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -3.30 Total: 12.02 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: -0.48 Total: 13.54 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.35 Total: -30.84 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -1.45 Total: -48.33 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -4.93 Total: 12.71 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.09 -4.37 -35.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604304196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.138 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds