Wall clock time and date at job start Tue Mar 31 2020 20:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34231 * 116.99536 * 2 1 4 4 O 1.20822 * 120.00592 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99818 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.46859 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.46732 * 179.97438 * 6 5 3 8 8 C 1.36965 * 120.00063 * 264.85432 * 7 6 5 9 9 H 1.08000 * 119.99687 * 125.49178 * 8 7 6 10 10 C 1.38981 * 119.99834 * 305.48836 * 8 7 6 11 11 N 1.31404 * 119.99930 * 4.57408 * 10 8 7 12 12 Si 1.86801 * 120.00027 * 184.56942 * 10 8 7 13 13 H 1.48505 * 109.47179 * 0.02562 * 12 10 8 14 14 H 1.48491 * 109.47170 * 120.00090 * 12 10 8 15 15 H 1.48497 * 109.47269 * 240.00479 * 12 10 8 16 16 C 1.34780 * 120.00116 * 84.85257 * 7 6 5 17 17 O 1.21633 * 119.99959 * 3.54002 * 16 7 6 18 18 C 1.47424 * 120.00258 * 183.53381 * 16 7 6 19 19 C 1.37945 * 126.76316 * 172.45554 * 18 16 7 20 20 O 1.33616 * 108.38835 * 180.02562 * 19 18 16 21 21 C 1.34892 * 109.89062 * 359.97438 * 20 19 18 22 22 C 1.41675 * 125.67472 * 180.02562 * 21 20 19 23 23 C 1.35664 * 119.99995 * 359.97438 * 22 21 20 24 24 C 1.41379 * 119.99869 * 179.97438 * 23 22 21 25 25 O 1.21698 * 120.00093 * 0.02562 * 24 23 22 26 26 O 1.34988 * 119.99501 * 180.02562 * 24 23 22 27 27 C 1.36514 * 108.64641 * 359.72697 * 21 20 19 28 28 H 1.08997 * 109.46969 * 60.00648 * 1 2 3 29 29 H 1.09003 * 109.46788 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47836 * 300.00241 * 1 2 3 31 31 H 1.09001 * 109.47210 * 59.99422 * 5 3 2 32 32 H 1.09001 * 109.46612 * 299.99637 * 5 3 2 33 33 H 1.08990 * 109.47467 * 60.00066 * 6 5 3 34 34 H 1.08999 * 109.46740 * 299.99569 * 6 5 3 35 35 H 0.97003 * 119.99974 * 179.97438 * 11 10 8 36 36 H 1.07997 * 125.80281 * 359.97438 * 19 18 16 37 37 H 1.08000 * 119.99622 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.00383 * 0.02562 * 23 22 21 39 39 H 0.96707 * 113.99623 * 180.02562 * 26 24 23 40 40 H 1.08000 * 126.70203 * 180.26401 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0612 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 3.9999 2.7423 0.0011 7 7 5.4629 2.8190 0.0023 8 6 6.1403 2.9609 1.1842 9 1 6.9181 2.2598 1.4483 10 6 5.8267 4.0073 2.0435 11 7 4.8215 4.8068 1.7658 12 14 6.8340 4.2770 3.5933 13 1 7.9021 3.2485 3.6748 14 1 7.4501 5.6276 3.5544 15 1 5.9512 4.1697 4.7825 16 6 6.1423 2.7498 -1.1597 17 8 5.5391 2.6886 -2.2141 18 6 7.6165 2.7485 -1.1527 19 6 8.4471 2.5386 -2.2339 20 8 9.7132 2.6167 -1.8142 21 6 9.7429 2.8721 -0.4900 22 6 10.9116 3.0217 0.2967 23 6 12.1352 2.9080 -0.2780 24 6 13.3015 3.0579 0.5069 25 8 13.2078 3.2884 1.6982 26 8 14.5190 2.9453 -0.0651 27 6 8.4593 2.9690 -0.0353 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9564 0.7806 -0.8891 32 1 3.9556 0.7811 0.8909 33 1 3.6099 3.2361 0.8910 34 1 3.6105 3.2365 -0.8890 35 1 4.6024 5.5368 2.3657 36 1 8.1282 2.3435 -3.2470 37 1 10.8284 3.2262 1.3539 38 1 12.2185 2.7039 -1.3353 39 1 15.2553 3.0627 0.5508 40 1 8.1472 3.1711 0.9787 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604304196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:37 Heat of formation + Delta-G solvation = -188.556673 kcal Electronic energy + Delta-G solvation = -28407.403794 eV Core-core repulsion = 23961.503210 eV Total energy + Delta-G solvation = -4445.900584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.63147 -41.54787 -41.21961 -40.28958 -37.64681 -37.16272 -36.85703 -35.35682 -34.35502 -33.83112 -32.15226 -30.35509 -28.74174 -27.15705 -25.95209 -25.86913 -23.48440 -22.33194 -21.81884 -21.37608 -20.49142 -19.38091 -18.80730 -18.48353 -17.96550 -17.69940 -17.64321 -17.45656 -17.18546 -17.12401 -16.55378 -16.30645 -16.14088 -15.45988 -15.34636 -14.99878 -14.79179 -14.50313 -14.18816 -13.93809 -13.77709 -13.63872 -13.43502 -13.10954 -13.07044 -13.00735 -12.75744 -12.59759 -12.42704 -12.03249 -11.94409 -11.80225 -11.78752 -11.73795 -11.59507 -10.97425 -10.73564 -10.61125 -9.41247 -9.02897 -8.29866 -6.28125 -0.71233 0.61265 1.14108 1.33065 1.45220 1.49451 1.59116 1.69215 1.85468 2.18688 2.27165 2.41659 2.62770 2.90449 3.03565 3.81105 3.85033 3.99234 4.07158 4.16372 4.16603 4.28590 4.32308 4.32558 4.40364 4.59830 4.62823 4.70511 4.75357 4.91764 4.99517 5.17360 5.22027 5.27543 5.36920 5.43663 5.49906 5.56235 5.97770 6.08753 6.34596 6.70879 6.96818 7.06039 7.47403 7.92920 8.72660 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.014522 B = 0.002952 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.645824 B = 9484.265313 C =10711.238729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.538 6.538 5 C -0.115 4.115 6 C 0.140 3.860 7 N -0.441 5.441 8 C -0.356 4.356 9 H 0.111 0.889 10 C 0.013 3.987 11 N -0.895 5.895 12 Si 0.962 3.038 13 H -0.236 1.236 14 H -0.280 1.280 15 H -0.281 1.281 16 C 0.539 3.461 17 O -0.627 6.627 18 C -0.237 4.237 19 C 0.070 3.930 20 O -0.153 6.153 21 C -0.057 4.057 22 C 0.056 3.944 23 C -0.223 4.223 24 C 0.524 3.476 25 O -0.559 6.559 26 O -0.502 6.502 27 C -0.101 4.101 28 H 0.059 0.941 29 H 0.138 0.862 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.033 0.967 35 H 0.272 0.728 36 H 0.247 0.753 37 H 0.164 0.836 38 H 0.153 0.847 39 H 0.426 0.574 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.515 -8.222 -1.710 11.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.153 4.153 6 C 0.016 3.984 7 N -0.159 5.159 8 C -0.484 4.484 9 H 0.128 0.872 10 C -0.192 4.192 11 N -0.530 5.530 12 Si 0.785 3.215 13 H -0.159 1.159 14 H -0.206 1.206 15 H -0.207 1.207 16 C 0.331 3.669 17 O -0.516 6.516 18 C -0.241 4.241 19 C -0.003 4.003 20 O -0.048 6.048 21 C -0.104 4.104 22 C 0.038 3.962 23 C -0.242 4.242 24 C 0.373 3.627 25 O -0.454 6.454 26 O -0.313 6.313 27 C -0.120 4.120 28 H 0.078 0.922 29 H 0.156 0.844 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.138 0.862 33 H 0.107 0.893 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.263 0.737 37 H 0.182 0.818 38 H 0.171 0.829 39 H 0.286 0.714 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 7.808 -7.828 -2.248 11.283 hybrid contribution -0.180 0.808 1.157 1.423 sum 7.628 -7.020 -1.090 10.424 Atomic orbital electron populations 1.23577 0.74808 1.05866 1.02426 1.86507 1.25127 1.32375 1.83866 1.23845 0.92137 0.81252 0.71028 1.90648 1.67872 1.37509 1.46713 1.21699 0.86800 1.00668 1.06163 1.20926 0.82559 0.92686 1.02213 1.43245 1.04258 1.62945 1.05427 1.19848 1.20165 1.11911 0.96435 0.87190 1.26434 0.96400 0.94346 1.01973 1.69938 1.27269 1.17090 1.38728 0.85329 0.79281 0.79278 0.77606 1.15891 1.20596 1.20697 1.18057 0.86659 0.78658 0.83529 1.90613 1.71092 1.57780 1.32092 1.20634 0.94201 1.13756 0.95543 1.25387 0.78742 0.96152 1.00015 1.83946 1.28771 1.68509 1.23530 1.19479 0.95143 1.13952 0.81833 1.20801 0.88259 0.88122 0.99010 1.21220 0.89714 1.11091 1.02209 1.19496 0.85058 0.72573 0.85569 1.90962 1.88487 1.47723 1.18186 1.85056 1.17007 1.84040 1.45245 1.23462 0.90134 0.96273 1.02139 0.92179 0.84391 0.92124 0.87809 0.86202 0.89328 0.94868 0.91860 0.73715 0.81829 0.82948 0.71409 0.79875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -11.02 10.57 -51.43 -0.54 -11.56 16 3 C 0.47 17.71 7.96 71.24 0.57 18.28 16 4 O -0.54 -23.51 15.73 21.98 0.35 -23.17 16 5 C -0.11 -4.40 6.10 29.85 0.18 -4.22 16 6 C 0.14 6.70 4.15 86.38 0.36 7.06 16 7 N -0.44 -21.07 2.45 -639.24 -1.57 -22.64 16 8 C -0.36 -16.26 6.36 84.07 0.54 -15.72 16 9 H 0.11 4.60 5.88 -2.91 -0.02 4.58 16 10 C 0.01 0.61 5.34 84.94 0.45 1.06 16 11 N -0.89 -46.83 11.43 21.67 0.25 -46.58 16 12 Si 0.96 36.39 29.03 68.60 1.99 38.38 16 13 H -0.24 -7.91 7.11 99.48 0.71 -7.20 16 14 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 15 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 16 C 0.54 25.14 7.60 86.66 0.66 25.80 16 17 O -0.63 -31.61 16.57 -4.14 -0.07 -31.68 16 18 C -0.24 -9.09 6.04 -20.08 -0.12 -9.21 16 19 C 0.07 2.08 11.95 67.75 0.81 2.89 16 20 O -0.15 -4.23 10.10 -1.92 -0.02 -4.25 16 21 C -0.06 -1.66 6.77 22.72 0.15 -1.50 16 22 C 0.06 1.41 9.37 22.52 0.21 1.63 16 23 C -0.22 -4.98 9.54 22.45 0.21 -4.77 16 24 C 0.52 11.79 8.04 68.59 0.55 12.34 16 25 O -0.56 -15.91 16.84 19.19 0.32 -15.59 16 26 O -0.50 -8.18 13.54 -59.06 -0.80 -8.98 16 27 C -0.10 -3.54 8.98 22.72 0.20 -3.34 16 28 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 29 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 31 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 32 H 0.12 4.19 8.14 -2.39 -0.02 4.17 16 33 H 0.09 4.67 5.99 -2.39 -0.01 4.66 16 34 H 0.03 1.75 7.49 -2.39 -0.02 1.73 16 35 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 36 H 0.25 5.66 8.06 -2.91 -0.02 5.63 16 37 H 0.16 3.97 7.46 -2.91 -0.02 3.95 16 38 H 0.15 3.01 7.70 -2.91 -0.02 2.98 16 39 H 0.43 3.17 8.98 -74.05 -0.67 2.50 16 40 H 0.18 6.70 4.38 -2.91 -0.01 6.69 16 Total: -1.00 -69.68 361.29 6.34 -63.34 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.46 Total: 30.67 kcal Atomic # 6 Polarization: 26.10 SS G_CDS: 5.97 Total: 32.08 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -1.32 Total: -69.23 kcal Atomic # 8 Polarization: -94.47 SS G_CDS: -0.76 Total: -95.23 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 1.99 Total: 38.38 kcal Total: -69.68 6.34 -63.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604304196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.219 kcal (2) G-P(sol) polarization free energy of solvation -69.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds