Wall clock time and date at job start Tue Mar 31 2020 19:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34734 * 125.87737 * 2 1 4 4 H 0.96999 * 125.35327 * 359.96443 * 3 2 1 5 5 C 1.37323 * 109.28962 * 179.97438 * 3 2 1 6 6 C 1.48005 * 125.75446 * 180.02562 * 5 3 2 7 7 N 1.34183 * 126.69506 * 359.68617 * 6 5 3 8 8 N 1.28981 * 107.25321 * 179.83993 * 7 6 5 9 9 N 1.28729 * 108.98411 * 0.43360 * 8 7 6 10 10 H 0.96998 * 125.31700 * 179.74654 * 9 8 7 11 11 N 1.28868 * 109.35228 * 359.72482 * 9 8 7 12 12 C 1.35678 * 108.49235 * 359.97438 * 5 3 2 13 13 C 1.37912 * 125.87991 * 179.68915 * 2 1 3 14 14 C 1.47158 * 126.53509 * 0.02644 * 13 2 1 15 15 O 1.21545 * 120.00196 * 359.97438 * 14 13 2 16 16 O 1.34780 * 119.99865 * 179.97438 * 14 13 2 17 17 C 1.45204 * 116.99817 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46982 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47271 * 179.97438 * 18 17 16 20 20 S 1.80997 * 109.47395 * 179.97438 * 19 18 17 21 21 C 1.76195 * 100.00156 * 179.97438 * 20 19 18 22 22 H 1.07997 * 119.99701 * 0.02562 * 21 20 19 23 23 C 1.38802 * 120.00088 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99556 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00156 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47153 * 90.00274 * 25 23 21 27 27 H 1.48507 * 109.47094 * 210.00703 * 25 23 21 28 28 H 1.48505 * 109.46804 * 330.00253 * 25 23 21 29 29 H 1.09002 * 109.47152 * 90.02255 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02355 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02336 * 1 2 3 32 32 H 1.08003 * 126.47287 * 179.97438 * 12 5 3 33 33 H 1.09000 * 109.47342 * 299.99467 * 17 16 14 34 34 H 1.08993 * 109.47305 * 59.99675 * 17 16 14 35 35 H 1.09000 * 109.46795 * 299.99983 * 18 17 16 36 36 H 1.09005 * 109.47295 * 59.99449 * 18 17 16 37 37 H 1.09003 * 109.46998 * 300.00182 * 19 18 17 38 38 H 1.09002 * 109.46838 * 60.00016 * 19 18 17 39 39 H 0.96998 * 119.99327 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2966 1.0917 0.0000 4 1 1.9845 2.0101 -0.0005 5 6 3.6127 0.6997 0.0006 6 6 4.7844 1.6039 0.0013 7 7 4.7619 2.9455 -0.0044 8 7 5.9871 3.3488 0.0021 9 7 6.7654 2.3234 0.0023 10 1 7.7348 2.3553 0.0030 11 7 6.0551 1.2481 0.0018 12 6 3.6578 -0.6563 0.0015 13 6 2.3153 -1.1174 0.0061 14 6 1.8707 -2.5202 0.0131 15 8 0.6837 -2.7816 0.0145 16 8 2.7798 -3.5152 0.0181 17 6 2.2693 -4.8745 0.0243 18 6 3.4404 -5.8592 0.0287 19 6 2.9026 -7.2915 0.0359 20 16 4.2879 -8.4562 0.0403 21 6 3.4055 -9.9813 0.0490 22 1 2.3255 -9.9802 0.0498 23 6 4.0983 -11.1840 0.0538 24 7 5.4146 -11.1852 0.0523 25 14 3.1628 -12.8008 0.0624 26 1 2.9134 -13.2358 -1.3354 27 1 3.9651 -13.8332 0.7665 28 1 1.8662 -12.6186 0.7631 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 0.8902 0.5135 31 1 -0.3633 -0.8898 0.5142 32 1 4.5472 -1.2691 0.0018 33 1 1.6603 -5.0299 0.9149 34 1 1.6607 -5.0382 -0.8649 35 1 4.0490 -5.7037 -0.8621 36 1 4.0494 -5.6956 0.9178 37 1 2.2941 -7.4466 0.9270 38 1 2.2934 -7.4553 -0.8530 39 1 5.8988 -12.0257 0.0561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605454857.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:18 Heat of formation + Delta-G solvation = 64.245681 kcal Electronic energy + Delta-G solvation = -24458.388344 eV Core-core repulsion = 20530.788466 eV Total energy + Delta-G solvation = -3927.599878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.90419 -41.92039 -39.87179 -36.50422 -34.83347 -34.01531 -33.43715 -32.41959 -31.91719 -31.65404 -27.61131 -26.58175 -25.50203 -25.11939 -24.11832 -22.89322 -21.25104 -21.06348 -20.11135 -19.63408 -17.88658 -17.61583 -17.44492 -16.93254 -16.47889 -15.96345 -15.31839 -15.03842 -14.79609 -14.51964 -14.35830 -14.21142 -13.82740 -13.30494 -13.24369 -13.11357 -12.76379 -12.65119 -12.61318 -12.14110 -12.02564 -11.86007 -11.62297 -11.37311 -11.26637 -11.09504 -10.90730 -10.86479 -10.65558 -10.42922 -10.17903 -9.59985 -9.53653 -9.05206 -8.49124 -8.31825 -6.53078 -6.22341 -3.92848 0.52007 0.92850 1.28187 1.69632 2.34985 2.38776 2.78997 3.13715 3.23029 3.23687 3.29548 3.31872 3.60720 3.82897 4.22627 4.36047 4.61942 4.72593 4.80473 4.99643 5.05633 5.13727 5.21637 5.22691 5.28063 5.40721 5.45802 5.56346 5.58587 5.73443 5.85081 5.91032 6.00055 6.15699 6.23994 6.32280 6.52024 6.57439 6.75330 6.79621 7.61641 7.65666 7.90034 8.37462 9.24080 10.85810 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.001803 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.230921 B =15522.331635 C =17085.503320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.142 3.858 3 N -0.521 5.521 4 H 0.428 0.572 5 C 0.057 3.943 6 C 0.248 3.752 7 N -0.282 5.282 8 N -0.045 5.045 9 N -0.222 5.222 10 H 0.479 0.521 11 N -0.278 5.278 12 C -0.064 4.064 13 C -0.217 4.217 14 C 0.540 3.460 15 O -0.519 6.519 16 O -0.349 6.349 17 C 0.075 3.925 18 C -0.098 4.098 19 C -0.114 4.114 20 S -0.125 6.125 21 C -0.517 4.517 22 H 0.073 0.927 23 C 0.071 3.929 24 N -0.870 5.870 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.165 0.835 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.872 30.617 -0.116 30.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.019 3.981 3 N -0.116 5.116 4 H 0.267 0.733 5 C -0.054 4.054 6 C -0.031 4.031 7 N -0.156 5.156 8 N -0.040 5.040 9 N -0.069 5.069 10 H 0.334 0.666 11 N -0.130 5.130 12 C -0.091 4.091 13 C -0.224 4.224 14 C 0.386 3.614 15 O -0.410 6.410 16 O -0.265 6.265 17 C 0.000 4.000 18 C -0.136 4.136 19 C -0.262 4.262 20 S 0.103 5.897 21 C -0.666 4.666 22 H 0.092 0.908 23 C -0.138 4.138 24 N -0.505 5.505 25 Si 0.746 3.254 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.182 0.818 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.604 31.329 -0.115 31.371 hybrid contribution -1.533 -1.273 -0.015 1.993 sum -3.137 30.056 -0.130 30.220 Atomic orbital electron populations 1.20724 0.85747 1.05018 1.04320 1.20776 0.93927 0.84587 0.98857 1.41450 1.04583 1.09223 1.56375 0.73307 1.16254 0.80115 0.90489 1.18565 1.22385 0.90096 0.88840 1.01823 1.76114 1.11258 1.09185 1.19024 1.78866 0.95625 1.15057 1.14490 1.47761 1.12986 1.00459 1.45742 0.66629 1.75049 1.03400 1.12667 1.21896 1.21233 0.97422 0.91271 0.99195 1.18387 0.93298 0.89707 1.21024 1.19944 0.83789 0.85260 0.72411 1.90802 1.17797 1.84940 1.47441 1.86537 1.39567 1.16613 1.83792 1.23239 0.97630 0.76577 1.02554 1.21279 0.96553 0.91501 1.04306 1.23179 1.03336 0.96413 1.03322 1.84649 1.08940 0.99199 1.96868 1.22703 0.94601 0.90722 1.58538 0.90839 1.25020 0.95099 0.99107 0.94585 1.70023 1.05945 1.27322 1.47221 0.86151 0.79450 0.81477 0.78364 1.20269 1.20766 1.19661 0.89473 0.90958 0.87433 0.81794 0.91169 0.91173 0.90361 0.90364 0.91736 0.91745 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 9.88 36.01 0.36 -0.29 16 2 C 0.14 1.20 7.22 -81.44 -0.59 0.61 16 3 N -0.52 -3.73 6.01 -5.50 -0.03 -3.76 16 4 H 0.43 1.94 8.96 -40.82 -0.37 1.58 16 5 C 0.06 0.52 7.08 -82.32 -0.58 -0.06 16 6 C 0.25 2.30 8.21 -156.26 -1.28 1.02 16 7 N -0.28 -2.60 12.54 32.09 0.40 -2.20 16 8 N -0.05 -0.35 13.47 60.35 0.81 0.46 16 9 N -0.22 -1.24 7.90 60.35 0.48 -0.76 16 10 H 0.48 0.42 8.96 -340.34 -3.05 -2.63 16 11 N -0.28 -2.32 12.38 32.11 0.40 -1.92 16 12 C -0.06 -0.66 10.62 -39.08 -0.42 -1.07 16 13 C -0.22 -2.41 6.14 -104.98 -0.64 -3.05 16 14 C 0.54 7.36 7.95 34.35 0.27 7.63 16 15 O -0.52 -7.79 14.58 -19.30 -0.28 -8.07 16 16 O -0.35 -5.02 10.08 -40.71 -0.41 -5.43 16 17 C 0.08 1.10 5.48 37.16 0.20 1.31 16 18 C -0.10 -1.61 5.60 -26.73 -0.15 -1.76 16 19 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 20 S -0.12 -3.25 21.44 -107.50 -2.30 -5.55 16 21 C -0.52 -14.81 9.50 30.94 0.29 -14.52 16 22 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 23 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 24 N -0.87 -25.93 13.22 55.49 0.73 -25.19 16 25 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.11 0.90 6.45 -51.93 -0.33 0.56 16 32 H 0.16 1.61 8.06 -52.48 -0.42 1.18 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 38 H 0.06 1.27 8.14 -51.91 -0.42 0.84 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -35.47 364.99 -9.25 -44.72 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -7.10 Total: -3.96 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -2.42 Total: -10.34 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 2.79 Total: -33.38 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.69 Total: -13.50 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -2.30 Total: -5.55 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.47 -9.25 -44.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605454857.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.968 kcal (2) G-P(sol) polarization free energy of solvation -35.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds