Wall clock time and date at job start Tue Mar 31 2020 19:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34734 * 125.87737 * 2 1 4 4 H 0.96999 * 125.35327 * 359.96443 * 3 2 1 5 5 C 1.37323 * 109.28962 * 179.97438 * 3 2 1 6 6 C 1.48005 * 125.75446 * 180.02562 * 5 3 2 7 7 N 1.34183 * 126.69506 * 359.68617 * 6 5 3 8 8 N 1.28981 * 107.25321 * 179.83993 * 7 6 5 9 9 N 1.28729 * 108.98411 * 0.43360 * 8 7 6 10 10 H 0.96998 * 125.31700 * 179.74654 * 9 8 7 11 11 N 1.28868 * 109.35228 * 359.72482 * 9 8 7 12 12 C 1.35678 * 108.49235 * 359.97438 * 5 3 2 13 13 C 1.37912 * 125.87991 * 179.68915 * 2 1 3 14 14 C 1.47158 * 126.53509 * 0.02644 * 13 2 1 15 15 O 1.21545 * 120.00196 * 359.97438 * 14 13 2 16 16 O 1.34780 * 119.99865 * 179.97438 * 14 13 2 17 17 C 1.45204 * 116.99817 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46982 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47271 * 179.97438 * 18 17 16 20 20 S 1.80997 * 109.47395 * 179.97438 * 19 18 17 21 21 C 1.76195 * 100.00156 * 179.97438 * 20 19 18 22 22 H 1.07997 * 119.99701 * 0.02562 * 21 20 19 23 23 C 1.38802 * 120.00088 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99556 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00156 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47153 * 90.00274 * 25 23 21 27 27 H 1.48507 * 109.47094 * 210.00703 * 25 23 21 28 28 H 1.48505 * 109.46804 * 330.00253 * 25 23 21 29 29 H 1.09002 * 109.47152 * 90.02255 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02355 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02336 * 1 2 3 32 32 H 1.08003 * 126.47287 * 179.97438 * 12 5 3 33 33 H 1.09000 * 109.47342 * 299.99467 * 17 16 14 34 34 H 1.08993 * 109.47305 * 59.99675 * 17 16 14 35 35 H 1.09000 * 109.46795 * 299.99983 * 18 17 16 36 36 H 1.09005 * 109.47295 * 59.99449 * 18 17 16 37 37 H 1.09003 * 109.46998 * 300.00182 * 19 18 17 38 38 H 1.09002 * 109.46838 * 60.00016 * 19 18 17 39 39 H 0.96998 * 119.99327 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2966 1.0917 0.0000 4 1 1.9845 2.0101 -0.0005 5 6 3.6127 0.6997 0.0006 6 6 4.7844 1.6039 0.0013 7 7 4.7619 2.9455 -0.0044 8 7 5.9871 3.3488 0.0021 9 7 6.7654 2.3234 0.0023 10 1 7.7348 2.3553 0.0030 11 7 6.0551 1.2481 0.0018 12 6 3.6578 -0.6563 0.0015 13 6 2.3153 -1.1174 0.0061 14 6 1.8707 -2.5202 0.0131 15 8 0.6837 -2.7816 0.0145 16 8 2.7798 -3.5152 0.0181 17 6 2.2693 -4.8745 0.0243 18 6 3.4404 -5.8592 0.0287 19 6 2.9026 -7.2915 0.0359 20 16 4.2879 -8.4562 0.0403 21 6 3.4055 -9.9813 0.0490 22 1 2.3255 -9.9802 0.0498 23 6 4.0983 -11.1840 0.0538 24 7 5.4146 -11.1852 0.0523 25 14 3.1628 -12.8008 0.0624 26 1 2.9134 -13.2358 -1.3354 27 1 3.9651 -13.8332 0.7665 28 1 1.8662 -12.6186 0.7631 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 0.8902 0.5135 31 1 -0.3633 -0.8898 0.5142 32 1 4.5472 -1.2691 0.0018 33 1 1.6603 -5.0299 0.9149 34 1 1.6607 -5.0382 -0.8649 35 1 4.0490 -5.7037 -0.8621 36 1 4.0494 -5.6956 0.9178 37 1 2.2941 -7.4466 0.9270 38 1 2.2934 -7.4553 -0.8530 39 1 5.8988 -12.0257 0.0561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605454857.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:17 Heat of formation + Delta-G solvation = 40.680378 kcal Electronic energy + Delta-G solvation = -24459.410212 eV Core-core repulsion = 20530.788466 eV Total energy + Delta-G solvation = -3928.621746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.51475 -42.64590 -40.93273 -37.63192 -35.44851 -34.85141 -34.64665 -34.55666 -32.68698 -32.27077 -28.48475 -27.93838 -27.36433 -25.82223 -24.92144 -23.73580 -22.61183 -21.77489 -20.86595 -20.42431 -19.51494 -18.60062 -18.22303 -17.94419 -17.61365 -16.94490 -16.88033 -16.17578 -16.09746 -15.64540 -15.54490 -15.13903 -14.88012 -14.53698 -14.03127 -13.98924 -13.91652 -13.70379 -13.62053 -13.37030 -13.09937 -12.93109 -12.76454 -12.57583 -12.47132 -12.34440 -12.30599 -12.26122 -11.99153 -11.63582 -11.41972 -11.35344 -11.13039 -10.33123 -10.29047 -9.19066 -8.65701 -8.36248 -6.12442 -0.09273 0.27548 0.42357 1.20780 1.30534 1.41173 1.46226 1.54734 1.65701 1.80652 2.05170 2.22514 2.29375 2.64891 2.98199 3.19829 3.31760 3.76062 3.83530 3.91596 3.99708 4.03628 4.06617 4.22581 4.34268 4.39306 4.44540 4.58284 4.72720 4.74765 4.79033 4.90273 5.07233 5.14453 5.23003 5.40318 5.41913 5.51657 5.56472 5.65517 6.19774 6.24778 6.84951 7.03679 7.06201 8.73094 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.001803 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.230921 B =15522.331635 C =17085.503320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.161 3.839 3 N -0.504 5.504 4 H 0.442 0.558 5 C 0.058 3.942 6 C 0.238 3.762 7 N -0.295 5.295 8 N -0.050 5.050 9 N -0.197 5.197 10 H 0.496 0.504 11 N -0.288 5.288 12 C -0.074 4.074 13 C -0.248 4.248 14 C 0.538 3.462 15 O -0.538 6.538 16 O -0.355 6.355 17 C 0.083 3.917 18 C -0.086 4.086 19 C -0.091 4.091 20 S -0.187 6.187 21 C -0.540 4.540 22 H 0.075 0.925 23 C 0.015 3.985 24 N -0.907 5.907 25 Si 0.995 3.005 26 H -0.268 1.268 27 H -0.274 1.274 28 H -0.263 1.263 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.161 0.839 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.980 31.891 -0.146 32.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.036 3.964 3 N -0.101 5.101 4 H 0.284 0.716 5 C -0.053 4.053 6 C -0.042 4.042 7 N -0.169 5.169 8 N -0.045 5.045 9 N -0.048 5.048 10 H 0.356 0.644 11 N -0.141 5.141 12 C -0.101 4.101 13 C -0.255 4.255 14 C 0.386 3.614 15 O -0.430 6.430 16 O -0.272 6.272 17 C 0.008 3.992 18 C -0.125 4.125 19 C -0.240 4.240 20 S 0.042 5.958 21 C -0.687 4.687 22 H 0.093 0.907 23 C -0.190 4.190 24 N -0.543 5.543 25 Si 0.817 3.183 26 H -0.193 1.193 27 H -0.199 1.199 28 H -0.187 1.187 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.179 0.821 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.688 32.652 -0.146 32.763 hybrid contribution -1.130 -1.505 -0.007 1.882 sum -3.818 31.148 -0.153 31.381 Atomic orbital electron populations 1.20797 0.84049 1.05659 1.05178 1.21022 0.94768 0.84033 0.96622 1.41414 1.03787 1.09746 1.55169 0.71576 1.16221 0.80845 0.90140 1.18125 1.22416 0.90318 0.88970 1.02512 1.76095 1.11928 1.09117 1.19712 1.78814 0.95560 1.15395 1.14701 1.47813 1.13784 0.99431 1.43815 0.64421 1.75018 1.03455 1.13567 1.22037 1.21229 0.97145 0.91896 0.99853 1.18376 0.94288 0.89009 1.23837 1.20330 0.83457 0.85815 0.71793 1.90786 1.18336 1.85221 1.48655 1.86524 1.40033 1.16506 1.84094 1.23001 0.96459 0.76736 1.03028 1.21098 0.97150 0.89873 1.04335 1.23065 1.00697 0.96471 1.03718 1.84639 1.13270 1.00852 1.97052 1.23062 0.94867 0.91935 1.58874 0.90730 1.26071 0.96064 1.03104 0.93775 1.70153 1.07679 1.28530 1.47952 0.85006 0.78169 0.76363 0.78808 1.19304 1.19937 1.18734 0.88372 0.87768 0.89288 0.82115 0.90724 0.90726 0.90373 0.90383 0.91271 0.91257 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 9.88 71.24 0.70 -0.37 16 2 C 0.16 2.48 7.22 42.04 0.30 2.78 16 3 N -0.50 -6.33 6.01 -171.31 -1.03 -7.36 16 4 H 0.44 2.99 8.96 -92.71 -0.83 2.15 16 5 C 0.06 1.00 7.08 40.28 0.29 1.29 16 6 C 0.24 4.14 8.21 137.16 1.13 5.26 16 7 N -0.30 -5.06 12.54 -52.38 -0.66 -5.72 16 8 N -0.05 -0.71 13.47 37.02 0.50 -0.21 16 9 N -0.20 -1.91 7.90 37.02 0.29 -1.61 16 10 H 0.50 0.05 8.96 -347.51 -3.11 -3.06 16 11 N -0.29 -4.49 12.38 -52.33 -0.65 -5.13 16 12 C -0.07 -1.50 10.62 22.60 0.24 -1.26 16 13 C -0.25 -5.38 6.14 -20.09 -0.12 -5.50 16 14 C 0.54 14.55 7.95 70.16 0.56 15.11 16 15 O -0.54 -15.96 14.58 19.69 0.29 -15.68 16 16 O -0.36 -10.14 10.08 -56.91 -0.57 -10.71 16 17 C 0.08 2.39 5.48 71.98 0.39 2.78 16 18 C -0.09 -2.81 5.60 30.60 0.17 -2.64 16 19 C -0.09 -3.61 5.67 71.98 0.41 -3.21 16 20 S -0.19 -9.92 21.44 -56.49 -1.21 -11.13 16 21 C -0.54 -31.16 9.50 67.95 0.65 -30.51 16 22 H 0.07 4.14 7.80 -2.91 -0.02 4.11 16 23 C 0.01 0.85 5.49 84.86 0.47 1.31 16 24 N -0.91 -54.71 13.22 21.65 0.29 -54.43 16 25 Si 0.99 43.98 29.55 68.60 2.03 46.01 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 28 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.09 1.39 6.45 -2.38 -0.02 1.37 16 32 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 37 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -76.62 364.99 1.64 -74.98 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -2.81 Total: 5.93 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 5.18 Total: -14.94 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -1.26 Total: -74.46 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.29 Total: -26.39 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -9.92 SS G_CDS: -1.21 Total: -11.13 kcal Total: -76.62 1.64 -74.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605454857.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.658 kcal (2) G-P(sol) polarization free energy of solvation -76.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds