Wall clock time and date at job start Tue Mar 31 2020 20:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45204 * 109.47466 * 2 1 4 4 C 1.34537 * 117.00120 * 180.02562 * 3 2 1 5 5 O 1.21433 * 120.00243 * 0.02562 * 4 3 2 6 6 O 1.34609 * 119.99843 * 179.97438 * 4 3 2 7 7 C 1.35778 * 116.99981 * 175.04141 * 6 4 3 8 8 C 1.38985 * 119.90303 * 255.64961 * 7 6 4 9 9 C 1.37714 * 120.09270 * 179.72750 * 8 7 6 10 10 C 1.39771 * 119.90442 * 0.54027 * 9 8 7 11 11 C 1.47525 * 120.09609 * 179.70690 * 10 9 8 12 12 O 1.21623 * 120.00345 * 173.53400 * 11 10 9 13 13 N 1.34778 * 120.00077 * 353.53017 * 11 10 9 14 14 C 1.36895 * 119.99942 * 164.17069 * 13 11 10 15 15 H 1.08001 * 119.99947 * 30.00040 * 14 13 11 16 16 C 1.39031 * 120.00220 * 209.98906 * 14 13 11 17 17 N 1.31378 * 119.99712 * 22.13468 * 16 14 13 18 18 Si 1.86796 * 120.00177 * 202.13156 * 16 14 13 19 19 H 1.48505 * 109.47182 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47208 * 120.00131 * 18 16 14 21 21 H 1.48507 * 109.47203 * 240.00271 * 18 16 14 22 22 C 1.46496 * 119.99994 * 344.18274 * 13 11 10 23 23 C 1.50694 * 109.47611 * 99.11185 * 22 13 11 24 24 O 1.20831 * 119.99972 * 0.02562 * 23 22 13 25 25 O 1.34233 * 120.00093 * 179.97438 * 23 22 13 26 26 C 1.39781 * 119.81056 * 359.73258 * 10 9 8 27 27 C 1.37712 * 119.90449 * 359.97438 * 26 10 9 28 28 H 1.09000 * 109.47167 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46689 * 299.99994 * 1 2 3 30 30 H 1.08998 * 109.47048 * 59.99498 * 1 2 3 31 31 H 1.09001 * 109.46991 * 240.00292 * 2 1 3 32 32 H 1.08996 * 109.47694 * 120.00139 * 2 1 3 33 33 H 1.08003 * 119.95095 * 359.97167 * 8 7 6 34 34 H 1.08002 * 120.04860 * 180.25197 * 9 8 7 35 35 H 0.96996 * 120.00115 * 179.97438 * 17 16 14 36 36 H 1.09007 * 109.47016 * 219.11974 * 22 13 11 37 37 H 1.09004 * 109.46796 * 339.10801 * 22 13 11 38 38 H 0.96700 * 117.00057 * 180.02562 * 25 23 22 39 39 H 1.08002 * 120.04783 * 179.97438 * 26 10 9 40 40 H 1.07999 * 119.95447 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3479 1.5452 -0.0005 5 8 4.0876 0.5822 -0.0015 6 8 3.8624 2.7891 -0.0011 7 6 5.2118 2.8980 0.1030 8 6 5.7845 3.2900 1.3071 9 6 7.1530 3.3964 1.4186 10 6 7.9655 3.1204 0.3154 11 6 9.4317 3.2392 0.4283 12 8 10.1431 2.8869 -0.4930 13 7 9.9827 3.7384 1.5524 14 6 11.3167 3.5562 1.8000 15 1 12.0123 3.4748 0.9778 16 6 11.7762 3.4763 3.1098 17 7 10.9515 3.1407 4.0758 18 14 13.5660 3.8461 3.4959 19 1 14.2808 4.1965 2.2422 20 1 13.6424 4.9858 4.4449 21 1 14.1979 2.6495 4.1075 22 6 9.1541 4.4756 2.5095 23 6 8.7616 3.5624 3.6422 24 8 9.1361 2.4136 3.6495 25 8 7.9969 4.0254 4.6435 26 6 7.3850 2.7320 -0.8954 27 6 6.0160 2.6223 -0.9964 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.1555 3.5077 2.1577 34 1 7.5974 3.6971 2.3559 35 1 11.2721 3.0846 4.9895 36 1 9.7185 5.3210 2.9032 37 1 8.2570 4.8394 2.0086 38 1 7.7714 3.4024 5.3479 39 1 8.0093 2.5182 -1.7504 40 1 5.5666 2.3227 -1.9317 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605556222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:47 Heat of formation + Delta-G solvation = -126.749054 kcal Electronic energy + Delta-G solvation = -29568.990056 eV Core-core repulsion = 25125.769651 eV Total energy + Delta-G solvation = -4443.220404 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.51279 -40.32662 -39.25800 -38.30145 -37.07788 -36.22882 -35.36232 -34.26347 -32.40844 -32.09144 -30.82915 -30.11570 -27.96263 -25.72052 -24.59577 -23.08519 -22.66185 -21.76473 -21.06156 -19.73147 -19.39281 -18.21655 -17.52790 -17.19240 -17.04386 -16.51992 -16.29244 -15.76322 -15.68823 -15.18395 -14.87647 -14.47255 -14.07136 -14.00165 -13.97078 -13.50983 -13.38124 -13.14687 -13.08486 -12.63085 -12.26524 -12.13506 -11.99036 -11.92537 -11.82645 -11.69097 -11.29771 -11.21152 -11.06822 -10.94900 -10.68223 -10.48159 -10.28836 -10.01646 -9.40275 -9.14299 -8.87058 -8.77952 -8.51130 -7.82819 -6.10147 -4.10111 0.64214 1.50040 1.67238 2.22201 3.03401 3.19358 3.26183 3.36856 3.53115 3.87083 4.01076 4.12234 4.35838 4.54191 4.54572 4.55192 4.87582 4.87831 4.95206 5.02288 5.11001 5.37112 5.38495 5.44775 5.53427 5.59295 5.63945 5.65640 5.98059 6.10126 6.16780 6.31571 6.39358 6.47598 6.54401 6.63533 6.97396 7.40542 7.70023 7.84453 7.89756 8.22862 8.90295 9.04555 9.35133 9.63989 10.49446 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.002968 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.375242 B = 9431.386497 C =10119.933310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.075 3.925 3 O -0.330 6.330 4 C 0.592 3.408 5 O -0.526 6.526 6 O -0.260 6.260 7 C 0.079 3.921 8 C -0.108 4.108 9 C -0.129 4.129 10 C -0.088 4.088 11 C 0.498 3.502 12 O -0.564 6.564 13 N -0.420 5.420 14 C -0.304 4.304 15 H 0.108 0.892 16 C 0.029 3.971 17 N -0.830 5.830 18 Si 0.922 3.078 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.281 1.281 22 C 0.119 3.881 23 C 0.446 3.554 24 O -0.420 6.420 25 O -0.548 6.548 26 C -0.063 4.063 27 C -0.115 4.115 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.135 0.865 34 H 0.169 0.831 35 H 0.260 0.740 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.392 0.608 39 H 0.144 0.856 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.991 0.553 -2.308 18.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.002 3.998 3 O -0.248 6.248 4 C 0.402 3.598 5 O -0.424 6.424 6 O -0.175 6.175 7 C 0.038 3.962 8 C -0.127 4.127 9 C -0.147 4.147 10 C -0.092 4.092 11 C 0.289 3.711 12 O -0.447 6.447 13 N -0.139 5.139 14 C -0.430 4.430 15 H 0.126 0.874 16 C -0.176 4.176 17 N -0.472 5.472 18 Si 0.748 3.252 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.207 1.207 22 C -0.008 4.008 23 C 0.282 3.718 24 O -0.298 6.298 25 O -0.361 6.361 26 C -0.082 4.082 27 C -0.134 4.134 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.153 0.847 34 H 0.185 0.815 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.248 0.752 39 H 0.161 0.839 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.287 0.142 -2.911 17.531 hybrid contribution 0.724 -0.552 1.055 1.393 sum -16.564 -0.411 -1.856 16.672 Atomic orbital electron populations 1.21850 0.91747 1.03417 1.03951 1.23267 0.95314 0.77639 1.03584 1.86269 1.18581 1.34035 1.85900 1.20757 0.82358 0.82587 0.74088 1.91150 1.60026 1.40279 1.50903 1.84311 1.22613 1.25871 1.84747 1.18537 0.77997 1.04797 0.94876 1.21084 0.95249 1.00798 0.95535 1.22852 0.92668 0.98333 1.00799 1.20611 0.95187 0.99402 0.94016 1.17995 0.86139 0.81746 0.85249 1.90631 1.62733 1.52921 1.38429 1.43249 1.08591 1.45839 1.16193 1.19703 0.81383 1.48644 0.93263 0.87411 1.25689 1.00367 0.95203 0.96315 1.71266 1.34159 1.40423 1.01315 0.85933 0.82180 0.78195 0.78847 1.18982 1.20441 1.20679 1.21389 0.96823 0.93819 0.88721 1.22603 0.76781 0.89597 0.82780 1.90645 1.43329 1.20265 1.75570 1.84475 1.67243 1.49093 1.35331 1.21115 0.93229 0.96250 0.97600 1.21170 0.93760 1.00334 0.98096 0.89489 0.91118 0.91153 0.90488 0.90439 0.84706 0.81488 0.92885 0.88302 0.87568 0.75195 0.83875 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.29 37.16 0.38 -0.43 16 2 C 0.08 0.64 6.19 37.16 0.23 0.87 16 3 O -0.33 -3.93 10.27 -47.97 -0.49 -4.42 16 4 C 0.59 8.72 8.81 101.05 0.89 9.61 16 5 O -0.53 -9.07 15.62 -27.41 -0.43 -9.50 16 6 O -0.26 -3.89 10.06 -31.98 -0.32 -4.21 16 7 C 0.08 1.28 5.18 -39.03 -0.20 1.08 16 8 C -0.11 -1.74 9.97 -39.50 -0.39 -2.14 16 9 C -0.13 -2.36 7.64 -39.20 -0.30 -2.66 16 10 C -0.09 -1.81 5.74 -104.96 -0.60 -2.42 16 11 C 0.50 12.27 7.47 -12.47 -0.09 12.18 16 12 O -0.56 -15.39 16.16 5.26 0.08 -15.31 16 13 N -0.42 -10.41 2.22 -123.71 -0.27 -10.68 16 14 C -0.30 -8.13 9.08 -15.00 -0.14 -8.27 16 15 H 0.11 3.01 7.53 -52.49 -0.40 2.61 16 16 C 0.03 0.73 5.03 -17.45 -0.09 0.64 16 17 N -0.83 -21.56 7.03 55.50 0.39 -21.17 16 18 Si 0.92 20.00 29.61 -169.99 -5.03 14.97 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 C 0.12 2.47 4.89 -5.20 -0.03 2.44 16 23 C 0.45 9.56 3.68 36.00 0.13 9.69 16 24 O -0.42 -10.80 13.87 -18.75 -0.26 -11.06 16 25 O -0.55 -9.48 13.41 -39.27 -0.53 -10.01 16 26 C -0.06 -1.13 9.59 -39.20 -0.38 -1.51 16 27 C -0.12 -1.85 9.48 -39.50 -0.37 -2.22 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 34 H 0.17 3.12 1.64 -71.66 -0.12 3.01 16 35 H 0.26 6.49 8.31 -40.82 -0.34 6.16 16 36 H 0.10 1.99 8.02 -51.93 -0.42 1.57 16 37 H 0.11 1.87 4.89 -51.93 -0.25 1.62 16 38 H 0.39 5.39 9.10 45.56 0.41 5.80 16 39 H 0.14 2.50 7.66 -52.49 -0.40 2.10 16 40 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 346.57 15.07 5.22 5.22 Total: -1.00 -34.24 346.57 -5.86 -40.10 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -3.26 Total: 9.20 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: -0.95 Total: 16.87 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.12 Total: -31.85 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -1.94 Total: -54.51 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.24 -5.86 -40.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605556222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.652 kcal (2) G-P(sol) polarization free energy of solvation -34.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds