Wall clock time and date at job start Tue Mar 31 2020 20:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45204 * 109.47466 * 2 1 4 4 C 1.34537 * 117.00120 * 180.02562 * 3 2 1 5 5 O 1.21433 * 120.00243 * 0.02562 * 4 3 2 6 6 O 1.34609 * 119.99843 * 179.97438 * 4 3 2 7 7 C 1.35778 * 116.99981 * 175.04141 * 6 4 3 8 8 C 1.38985 * 119.90303 * 255.64961 * 7 6 4 9 9 C 1.37714 * 120.09270 * 179.72750 * 8 7 6 10 10 C 1.39771 * 119.90442 * 0.54027 * 9 8 7 11 11 C 1.47525 * 120.09609 * 179.70690 * 10 9 8 12 12 O 1.21623 * 120.00345 * 173.53400 * 11 10 9 13 13 N 1.34778 * 120.00077 * 353.53017 * 11 10 9 14 14 C 1.36895 * 119.99942 * 164.17069 * 13 11 10 15 15 H 1.08001 * 119.99947 * 30.00040 * 14 13 11 16 16 C 1.39031 * 120.00220 * 209.98906 * 14 13 11 17 17 N 1.31378 * 119.99712 * 22.13468 * 16 14 13 18 18 Si 1.86796 * 120.00177 * 202.13156 * 16 14 13 19 19 H 1.48505 * 109.47182 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47208 * 120.00131 * 18 16 14 21 21 H 1.48507 * 109.47203 * 240.00271 * 18 16 14 22 22 C 1.46496 * 119.99994 * 344.18274 * 13 11 10 23 23 C 1.50694 * 109.47611 * 99.11185 * 22 13 11 24 24 O 1.20831 * 119.99972 * 0.02562 * 23 22 13 25 25 O 1.34233 * 120.00093 * 179.97438 * 23 22 13 26 26 C 1.39781 * 119.81056 * 359.73258 * 10 9 8 27 27 C 1.37712 * 119.90449 * 359.97438 * 26 10 9 28 28 H 1.09000 * 109.47167 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46689 * 299.99994 * 1 2 3 30 30 H 1.08998 * 109.47048 * 59.99498 * 1 2 3 31 31 H 1.09001 * 109.46991 * 240.00292 * 2 1 3 32 32 H 1.08996 * 109.47694 * 120.00139 * 2 1 3 33 33 H 1.08003 * 119.95095 * 359.97167 * 8 7 6 34 34 H 1.08002 * 120.04860 * 180.25197 * 9 8 7 35 35 H 0.96996 * 120.00115 * 179.97438 * 17 16 14 36 36 H 1.09007 * 109.47016 * 219.11974 * 22 13 11 37 37 H 1.09004 * 109.46796 * 339.10801 * 22 13 11 38 38 H 0.96700 * 117.00057 * 180.02562 * 25 23 22 39 39 H 1.08002 * 120.04783 * 179.97438 * 26 10 9 40 40 H 1.07999 * 119.95447 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3479 1.5452 -0.0005 5 8 4.0876 0.5822 -0.0015 6 8 3.8624 2.7891 -0.0011 7 6 5.2118 2.8980 0.1030 8 6 5.7845 3.2900 1.3071 9 6 7.1530 3.3964 1.4186 10 6 7.9655 3.1204 0.3154 11 6 9.4317 3.2392 0.4283 12 8 10.1431 2.8869 -0.4930 13 7 9.9827 3.7384 1.5524 14 6 11.3167 3.5562 1.8000 15 1 12.0123 3.4748 0.9778 16 6 11.7762 3.4763 3.1098 17 7 10.9515 3.1407 4.0758 18 14 13.5660 3.8461 3.4959 19 1 14.2808 4.1965 2.2422 20 1 13.6424 4.9858 4.4449 21 1 14.1979 2.6495 4.1075 22 6 9.1541 4.4756 2.5095 23 6 8.7616 3.5624 3.6422 24 8 9.1361 2.4136 3.6495 25 8 7.9969 4.0254 4.6435 26 6 7.3850 2.7320 -0.8954 27 6 6.0160 2.6223 -0.9964 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.1555 3.5077 2.1577 34 1 7.5974 3.6971 2.3559 35 1 11.2721 3.0846 4.9895 36 1 9.7185 5.3210 2.9032 37 1 8.2570 4.8394 2.0086 38 1 7.7714 3.4024 5.3479 39 1 8.0093 2.5182 -1.7504 40 1 5.5666 2.3227 -1.9317 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605556222.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:46 Heat of formation + Delta-G solvation = -148.415203 kcal Electronic energy + Delta-G solvation = -29569.929570 eV Core-core repulsion = 25125.769651 eV Total energy + Delta-G solvation = -4444.159919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.73778 -41.92436 -40.48892 -39.92082 -38.50563 -37.42861 -37.11027 -36.02520 -34.20677 -32.76592 -32.29678 -31.56610 -29.66159 -27.40891 -25.87468 -24.08534 -24.04493 -22.98615 -22.66694 -21.38895 -20.52226 -19.43525 -19.12896 -18.78199 -18.51995 -18.04487 -17.54288 -17.46665 -17.00608 -16.61448 -16.45573 -16.03116 -15.54359 -15.38895 -15.27498 -15.02263 -14.85036 -14.55221 -13.87029 -13.68568 -13.64640 -13.58087 -13.53357 -13.31663 -13.04881 -12.93741 -12.67448 -12.59646 -12.52881 -12.40744 -12.16502 -11.80203 -11.73240 -11.66486 -11.25961 -10.97098 -10.67900 -10.20604 -9.99664 -9.69634 -8.01155 -6.10916 -0.69788 0.13903 0.48740 1.06106 1.31668 1.40989 1.55029 1.77661 1.86380 2.19579 2.49581 2.66306 2.83269 2.95520 3.02788 3.63410 3.70547 3.75654 3.96260 3.97276 4.04235 4.08226 4.15411 4.22903 4.32911 4.50342 4.65431 4.79135 4.88320 4.90985 4.93208 4.99755 5.02454 5.18930 5.21014 5.38006 5.40330 5.66190 5.97686 6.18797 6.34558 6.69620 6.97713 7.15868 7.67554 7.80940 8.55532 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.002968 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.375242 B = 9431.386497 C =10119.933310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.064 3.936 3 O -0.325 6.325 4 C 0.598 3.402 5 O -0.554 6.554 6 O -0.255 6.255 7 C 0.087 3.913 8 C -0.100 4.100 9 C -0.128 4.128 10 C -0.115 4.115 11 C 0.488 3.512 12 O -0.608 6.608 13 N -0.432 5.432 14 C -0.342 4.342 15 H 0.080 0.920 16 C -0.003 4.003 17 N -0.841 5.841 18 Si 0.986 3.014 19 H -0.270 1.270 20 H -0.261 1.261 21 H -0.285 1.285 22 C 0.113 3.887 23 C 0.462 3.538 24 O -0.470 6.470 25 O -0.530 6.530 26 C -0.064 4.064 27 C -0.108 4.108 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.260 0.740 36 H 0.103 0.897 37 H 0.139 0.861 38 H 0.411 0.589 39 H 0.142 0.858 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.785 0.975 -1.462 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.008 4.008 3 O -0.243 6.243 4 C 0.408 3.592 5 O -0.453 6.453 6 O -0.170 6.170 7 C 0.046 3.954 8 C -0.118 4.118 9 C -0.146 4.146 10 C -0.118 4.118 11 C 0.280 3.720 12 O -0.495 6.495 13 N -0.150 5.150 14 C -0.468 4.468 15 H 0.098 0.902 16 C -0.206 4.206 17 N -0.481 5.481 18 Si 0.810 3.190 19 H -0.194 1.194 20 H -0.185 1.185 21 H -0.211 1.211 22 C -0.012 4.012 23 C 0.301 3.699 24 O -0.351 6.351 25 O -0.345 6.345 26 C -0.083 4.083 27 C -0.126 4.126 28 H 0.129 0.871 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.185 0.815 34 H 0.182 0.818 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.157 0.843 38 H 0.270 0.730 39 H 0.159 0.841 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -20.154 0.597 -2.020 20.263 hybrid contribution 1.317 -0.742 0.771 1.697 sum -18.837 -0.145 -1.249 18.879 Atomic orbital electron populations 1.21900 0.89069 1.05049 1.04240 1.23697 0.97261 0.76063 1.03823 1.86332 1.16579 1.36197 1.85143 1.20785 0.83124 0.81849 0.73412 1.91148 1.60897 1.40949 1.52343 1.84287 1.21692 1.26283 1.84781 1.18651 0.78662 1.03344 0.94778 1.21327 0.94427 0.99481 0.96609 1.22720 0.93475 0.98596 0.99761 1.20380 0.92914 1.02462 0.96040 1.18675 0.87961 0.80755 0.84654 1.90572 1.64322 1.54728 1.39857 1.43346 1.08534 1.46164 1.16941 1.19568 0.82438 1.51640 0.93191 0.90190 1.26372 1.04182 0.94340 0.95695 1.71432 1.35323 1.40106 1.01282 0.85006 0.77437 0.78128 0.78471 1.19392 1.18539 1.21085 1.21647 0.97690 0.93333 0.88526 1.22564 0.75687 0.88648 0.83043 1.90638 1.45720 1.22124 1.76659 1.84408 1.65949 1.49087 1.35012 1.21145 0.94249 0.96108 0.96847 1.21383 0.92711 0.99159 0.99346 0.87106 0.90897 0.90775 0.90155 0.90436 0.81498 0.81842 0.92932 0.87884 0.84348 0.72963 0.84063 0.82562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 71.98 0.74 -0.39 16 2 C 0.06 0.94 6.19 71.98 0.45 1.38 16 3 O -0.32 -6.91 10.27 -46.89 -0.48 -7.39 16 4 C 0.60 16.12 8.81 113.37 1.00 17.12 16 5 O -0.55 -18.04 15.62 27.89 0.44 -17.61 16 6 O -0.25 -6.86 10.06 10.32 0.10 -6.76 16 7 C 0.09 2.59 5.18 22.63 0.12 2.71 16 8 C -0.10 -2.96 9.97 22.32 0.22 -2.74 16 9 C -0.13 -4.54 7.64 22.52 0.17 -4.37 16 10 C -0.11 -4.75 5.74 -20.08 -0.12 -4.86 16 11 C 0.49 25.06 7.47 86.69 0.65 25.71 16 12 O -0.61 -35.18 16.16 -4.10 -0.07 -35.25 16 13 N -0.43 -22.16 2.22 -663.56 -1.47 -23.63 16 14 C -0.34 -19.13 9.08 84.09 0.76 -18.36 16 15 H 0.08 4.79 7.53 -2.91 -0.02 4.76 16 16 C 0.00 -0.14 5.03 84.95 0.43 0.29 16 17 N -0.84 -43.96 7.03 21.68 0.15 -43.81 16 18 Si 0.99 41.73 29.61 68.60 2.03 43.76 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 22 C 0.11 4.70 4.89 85.63 0.42 5.12 16 23 C 0.46 19.51 3.68 71.23 0.26 19.77 16 24 O -0.47 -24.32 13.87 21.95 0.30 -24.01 16 25 O -0.53 -17.17 13.41 -51.45 -0.69 -17.86 16 26 C -0.06 -2.32 9.59 22.52 0.22 -2.10 16 27 C -0.11 -3.26 9.48 22.32 0.21 -3.05 16 28 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 34 H 0.17 5.92 1.64 -20.92 -0.03 5.89 16 35 H 0.26 12.94 8.31 -92.71 -0.77 12.17 16 36 H 0.10 4.14 8.02 -2.38 -0.02 4.12 16 37 H 0.14 4.76 4.89 -2.38 -0.01 4.75 16 38 H 0.41 10.28 9.10 -74.06 -0.67 9.60 16 39 H 0.14 5.07 7.66 -2.91 -0.02 5.05 16 40 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -76.66 346.57 6.27 -70.39 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.42 Total: 25.93 kcal Atomic # 6 Polarization: 30.70 SS G_CDS: 5.53 Total: 36.23 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -1.32 Total: -67.44 kcal Atomic # 8 Polarization: -108.48 SS G_CDS: -0.39 Total: -108.87 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -76.66 6.27 -70.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605556222.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.026 kcal (2) G-P(sol) polarization free energy of solvation -76.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds