Wall clock time and date at job start Tue Mar 31 2020 19:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38339 * 119.93838 * 2 1 4 4 C 1.38296 * 120.23646 * 179.97438 * 3 2 1 5 5 C 1.38045 * 120.11265 * 359.71836 * 4 3 2 6 6 S 1.76208 * 120.05891 * 180.27484 * 5 4 3 7 7 O 1.42098 * 106.39957 * 356.89815 * 6 5 4 8 8 O 1.42098 * 106.39962 * 129.81243 * 6 5 4 9 9 N 1.65590 * 107.21895 * 243.35803 * 6 5 4 10 10 C 1.46501 * 120.00342 * 64.29352 * 9 6 5 11 11 C 1.52999 * 109.47262 * 164.06388 * 10 9 6 12 12 C 1.50702 * 109.47297 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99712 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00265 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99709 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00002 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47375 * 59.99998 * 16 14 12 18 18 H 1.48504 * 109.47206 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47247 * 299.99841 * 16 14 12 20 20 C 1.39278 * 119.88532 * 0.57902 * 5 4 3 21 21 C 1.48463 * 120.11685 * 179.69921 * 20 5 4 22 22 N 1.34038 * 126.68003 * 353.50837 * 21 20 5 23 23 N 1.28982 * 107.27401 * 179.97438 * 22 21 20 24 24 N 1.28736 * 108.94203 * 0.02562 * 23 22 21 25 25 H 0.96993 * 125.33905 * 179.97438 * 24 23 22 26 26 N 1.28873 * 109.31399 * 359.97438 * 24 23 22 27 27 C 1.37999 * 119.94287 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47732 * 269.98076 * 1 2 3 29 29 H 1.09001 * 109.46998 * 29.98578 * 1 2 3 30 30 H 1.09000 * 109.46853 * 149.98064 * 1 2 3 31 31 H 1.07999 * 119.88199 * 359.97348 * 3 2 1 32 32 H 1.07998 * 119.93975 * 179.97438 * 4 3 2 33 33 H 0.97001 * 120.00043 * 244.28690 * 9 6 5 34 34 H 1.08998 * 109.47121 * 284.05807 * 10 9 6 35 35 H 1.08996 * 109.47119 * 44.06061 * 10 9 6 36 36 H 1.09011 * 109.46850 * 299.99738 * 11 10 9 37 37 H 1.08998 * 109.47393 * 59.99253 * 11 10 9 38 38 H 0.96994 * 119.99794 * 180.02562 * 15 14 12 39 39 H 1.08006 * 120.06000 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2060 0.0005 5 6 4.2792 0.0155 0.0069 6 16 6.0412 0.0263 0.0149 7 8 6.4343 1.3897 -0.0607 8 8 6.4430 -0.8412 1.0662 9 7 6.5422 -0.6837 -1.3946 10 6 6.2353 -0.0542 -2.6814 11 6 7.1203 -0.6629 -3.7709 12 6 6.8052 -0.0149 -5.0945 13 1 6.0489 0.7539 -5.1528 14 6 7.4822 -0.4035 -6.2310 15 7 8.4035 -1.3394 -6.1598 16 14 7.0910 0.3993 -7.8716 17 1 7.3482 1.8591 -7.7823 18 1 7.9509 -0.1906 -8.9289 19 1 5.6631 0.1679 -8.2080 20 6 3.5891 -1.1943 0.0007 21 6 4.3354 -2.4777 0.0008 22 7 5.6618 -2.6325 -0.1151 23 7 5.9051 -3.8983 -0.0683 24 7 4.7936 -4.5327 0.0704 25 1 4.7014 -5.4963 0.1316 26 7 3.8226 -3.6866 0.1151 27 6 2.1958 -1.1958 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6545 2.1324 -0.0004 32 1 4.1145 2.1446 0.0001 33 1 7.0389 -1.5165 -1.3684 34 1 5.1872 -0.2236 -2.9280 35 1 6.4246 1.0172 -2.6160 36 1 8.1686 -0.4935 -3.5243 37 1 6.9311 -1.7344 -3.8363 38 1 8.8801 -1.6125 -6.9593 39 1 1.6559 -2.1312 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605881984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:53 Heat of formation + Delta-G solvation = 90.590133 kcal Electronic energy + Delta-G solvation = -27292.336860 eV Core-core repulsion = 23365.879363 eV Total energy + Delta-G solvation = -3926.457497 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.53958 -39.62868 -36.81439 -35.36482 -35.32456 -34.53378 -33.91233 -32.88218 -32.62310 -30.79949 -28.98178 -27.61361 -25.08464 -24.59916 -24.27588 -22.35453 -21.65123 -20.96824 -19.46168 -18.90108 -17.75168 -17.22146 -16.91264 -16.20024 -16.11829 -15.94237 -15.12971 -14.65421 -14.44604 -14.24610 -14.15990 -13.91102 -13.76829 -13.59590 -12.74966 -12.63476 -12.58675 -12.43193 -12.14170 -11.79935 -11.64466 -11.58590 -11.56443 -11.35295 -11.15374 -11.03556 -11.01917 -10.91142 -10.65270 -10.55675 -10.33611 -9.47888 -9.30319 -9.19585 -8.96395 -8.67433 -8.33264 -6.01905 -4.04901 0.27235 0.81530 0.96737 1.15325 2.13705 2.20637 3.27801 3.33477 3.37815 3.39834 3.41351 3.60349 3.98567 4.15229 4.45419 4.47093 4.58847 4.75835 4.85610 5.10799 5.18510 5.25052 5.33660 5.34441 5.37231 5.46651 5.61842 5.72203 5.89035 5.93295 6.01746 6.16159 6.29482 6.32584 6.56413 6.65702 6.87226 7.65192 7.74651 7.80391 7.98813 8.03457 8.36445 9.00991 9.58922 11.09507 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.004153 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.701635 B = 6740.385983 C = 7370.552723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.040 4.040 3 C -0.125 4.125 4 C -0.017 4.017 5 C -0.649 4.649 6 S 2.699 3.301 7 O -0.969 6.969 8 O -0.952 6.952 9 N -1.094 6.094 10 C 0.118 3.882 11 C 0.020 3.980 12 C -0.522 4.522 13 H 0.058 0.942 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.895 3.105 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.091 3.909 21 C 0.192 3.808 22 N -0.246 5.246 23 N -0.028 5.028 24 N -0.227 5.227 25 H 0.476 0.524 26 N -0.282 5.282 27 C -0.104 4.104 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.137 0.863 32 H 0.152 0.848 33 H 0.423 0.577 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.021 0.979 38 H 0.262 0.738 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.818 -2.967 14.943 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.040 4.040 3 C -0.144 4.144 4 C -0.036 4.036 5 C -0.734 4.734 6 S 2.784 3.216 7 O -0.958 6.958 8 O -0.941 6.941 9 N -0.858 5.858 10 C -0.007 4.007 11 C -0.018 4.018 12 C -0.561 4.561 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.722 3.278 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.203 1.203 20 C 0.086 3.914 21 C -0.088 4.088 22 N -0.120 5.120 23 N -0.023 5.023 24 N -0.072 5.072 25 H 0.331 0.669 26 N -0.134 5.134 27 C -0.125 4.125 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.170 0.830 33 H 0.261 0.739 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.739 -2.947 15.462 21.564 hybrid contribution -1.162 -0.599 -1.230 1.796 sum -15.901 -3.546 14.231 21.632 Atomic orbital electron populations 1.20913 0.90138 1.03671 1.02962 1.20103 0.96626 0.92711 0.94581 1.21336 0.94189 0.98089 1.00821 1.20983 0.94509 0.96819 0.91290 1.31349 1.29299 0.97481 1.15272 1.01815 0.73165 0.73214 0.73376 1.93555 1.80222 1.35175 1.86887 1.93569 1.80377 1.66052 1.54057 1.55455 1.70072 1.39316 1.20993 1.21595 0.99537 0.97083 0.82477 1.19245 0.95032 0.96327 0.91236 1.21077 1.21223 1.21361 0.92470 0.92384 1.24994 0.95011 0.95091 0.99169 1.69959 1.24289 1.29734 1.29197 0.86619 0.78183 0.79753 0.83208 1.20073 1.21308 1.20296 1.16561 0.92147 0.85341 0.97318 1.23627 0.88983 0.92690 1.03461 1.75998 1.12505 1.07362 1.16170 1.78956 1.10432 0.99347 1.13604 1.47697 1.01404 1.12472 1.45656 0.66916 1.74767 1.17834 0.99407 1.21342 1.21095 0.92038 0.98834 1.00514 0.90368 0.90704 0.90845 0.84538 0.83035 0.73927 0.93626 0.91445 0.95481 0.96078 0.92871 0.84227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.04 -0.39 5.88 -104.67 -0.61 -1.01 16 3 C -0.12 -1.27 9.69 -39.52 -0.38 -1.66 16 4 C -0.02 -0.22 9.54 -39.63 -0.38 -0.60 16 5 C -0.65 -9.87 5.89 -39.27 -0.23 -10.10 16 6 S 2.70 48.19 4.91 -107.50 -0.53 47.67 16 7 O -0.97 -19.00 16.46 -57.17 -0.94 -19.95 16 8 O -0.95 -18.35 15.07 -57.17 -0.86 -19.21 16 9 N -1.09 -20.76 4.86 -10.61 -0.05 -20.81 16 10 C 0.12 2.49 6.16 -4.04 -0.02 2.47 16 11 C 0.02 0.52 5.12 -27.88 -0.14 0.38 16 12 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 16 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.09 1.31 5.87 -104.89 -0.62 0.70 16 21 C 0.19 2.94 7.59 -156.31 -1.19 1.75 16 22 N -0.25 -4.12 5.62 32.15 0.18 -3.94 16 23 N -0.03 -0.39 13.47 60.35 0.81 0.42 16 24 N -0.23 -2.38 7.90 60.35 0.48 -1.90 16 25 H 0.48 2.38 8.96 -340.38 -3.05 -0.67 16 26 N -0.28 -3.53 12.10 32.17 0.39 -3.14 16 27 C -0.10 -1.20 9.35 -39.27 -0.37 -1.57 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.15 1.78 7.34 -52.49 -0.39 1.40 16 33 H 0.42 7.97 7.15 -34.46 -0.25 7.72 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.41 7.75 -51.93 -0.40 1.01 16 36 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.14 1.34 7.90 -52.48 -0.41 0.93 16 LS Contribution 346.13 15.07 5.22 5.22 Total: -1.00 -36.44 346.13 -10.58 -47.01 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.99 Total: 1.36 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -3.99 Total: -23.33 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 2.54 Total: -55.20 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -1.80 Total: -39.16 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 48.19 SS G_CDS: -0.53 Total: 47.67 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.44 -10.58 -47.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605881984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.604 kcal (2) G-P(sol) polarization free energy of solvation -36.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds