Wall clock time and date at job start Tue Mar 31 2020 19:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38339 * 119.93838 * 2 1 4 4 C 1.38296 * 120.23646 * 179.97438 * 3 2 1 5 5 C 1.38045 * 120.11265 * 359.71836 * 4 3 2 6 6 S 1.76208 * 120.05891 * 180.27484 * 5 4 3 7 7 O 1.42098 * 106.39957 * 356.89815 * 6 5 4 8 8 O 1.42098 * 106.39962 * 129.81243 * 6 5 4 9 9 N 1.65590 * 107.21895 * 243.35803 * 6 5 4 10 10 C 1.46501 * 120.00342 * 64.29352 * 9 6 5 11 11 C 1.52999 * 109.47262 * 164.06388 * 10 9 6 12 12 C 1.50702 * 109.47297 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99712 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00265 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99709 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00002 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47375 * 59.99998 * 16 14 12 18 18 H 1.48504 * 109.47206 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47247 * 299.99841 * 16 14 12 20 20 C 1.39278 * 119.88532 * 0.57902 * 5 4 3 21 21 C 1.48463 * 120.11685 * 179.69921 * 20 5 4 22 22 N 1.34038 * 126.68003 * 353.50837 * 21 20 5 23 23 N 1.28982 * 107.27401 * 179.97438 * 22 21 20 24 24 N 1.28736 * 108.94203 * 0.02562 * 23 22 21 25 25 H 0.96993 * 125.33905 * 179.97438 * 24 23 22 26 26 N 1.28873 * 109.31399 * 359.97438 * 24 23 22 27 27 C 1.37999 * 119.94287 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47732 * 269.98076 * 1 2 3 29 29 H 1.09001 * 109.46998 * 29.98578 * 1 2 3 30 30 H 1.09000 * 109.46853 * 149.98064 * 1 2 3 31 31 H 1.07999 * 119.88199 * 359.97348 * 3 2 1 32 32 H 1.07998 * 119.93975 * 179.97438 * 4 3 2 33 33 H 0.97001 * 120.00043 * 244.28690 * 9 6 5 34 34 H 1.08998 * 109.47121 * 284.05807 * 10 9 6 35 35 H 1.08996 * 109.47119 * 44.06061 * 10 9 6 36 36 H 1.09011 * 109.46850 * 299.99738 * 11 10 9 37 37 H 1.08998 * 109.47393 * 59.99253 * 11 10 9 38 38 H 0.96994 * 119.99794 * 180.02562 * 15 14 12 39 39 H 1.08006 * 120.06000 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2060 0.0005 5 6 4.2792 0.0155 0.0069 6 16 6.0412 0.0263 0.0149 7 8 6.4343 1.3897 -0.0607 8 8 6.4430 -0.8412 1.0662 9 7 6.5422 -0.6837 -1.3946 10 6 6.2353 -0.0542 -2.6814 11 6 7.1203 -0.6629 -3.7709 12 6 6.8052 -0.0149 -5.0945 13 1 6.0489 0.7539 -5.1528 14 6 7.4822 -0.4035 -6.2310 15 7 8.4035 -1.3394 -6.1598 16 14 7.0910 0.3993 -7.8716 17 1 7.3482 1.8591 -7.7823 18 1 7.9509 -0.1906 -8.9289 19 1 5.6631 0.1679 -8.2080 20 6 3.5891 -1.1943 0.0007 21 6 4.3354 -2.4777 0.0008 22 7 5.6618 -2.6325 -0.1151 23 7 5.9051 -3.8983 -0.0683 24 7 4.7936 -4.5327 0.0704 25 1 4.7014 -5.4963 0.1316 26 7 3.8226 -3.6866 0.1151 27 6 2.1958 -1.1958 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6545 2.1324 -0.0004 32 1 4.1145 2.1446 0.0001 33 1 7.0389 -1.5165 -1.3684 34 1 5.1872 -0.2236 -2.9280 35 1 6.4246 1.0172 -2.6160 36 1 8.1686 -0.4935 -3.5243 37 1 6.9311 -1.7344 -3.8363 38 1 8.8801 -1.6125 -6.9593 39 1 1.6559 -2.1312 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605881984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:52 Heat of formation + Delta-G solvation = 63.327214 kcal Electronic energy + Delta-G solvation = -27293.519069 eV Core-core repulsion = 23365.879363 eV Total energy + Delta-G solvation = -3927.639705 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.58063 -40.51790 -38.26166 -37.00708 -36.82325 -35.64805 -34.91487 -34.65327 -33.75093 -31.73745 -30.93676 -28.33485 -26.44609 -25.96575 -25.57397 -23.27022 -22.97376 -22.53503 -20.62347 -20.08836 -19.02295 -18.49520 -18.26719 -18.02099 -17.30136 -17.01583 -16.49358 -16.28615 -15.66785 -15.48357 -15.31646 -15.17235 -14.84747 -14.82854 -14.36864 -13.59502 -13.52091 -13.30677 -13.23156 -13.19936 -13.08952 -13.07283 -13.04795 -12.93826 -12.51219 -12.41721 -12.35390 -12.26239 -12.09883 -11.98205 -11.75850 -11.46260 -11.29747 -10.58085 -10.21507 -10.13859 -9.88394 -8.18536 -6.29968 -0.73452 -0.42673 -0.05665 0.12806 1.16559 1.33261 1.43403 1.47003 1.54475 2.07847 2.41932 2.43262 2.47096 2.82572 2.95981 3.15677 3.43570 3.80042 3.86239 3.96652 4.16841 4.23658 4.28817 4.35136 4.49229 4.55713 4.64714 4.86746 4.88053 4.88258 4.96509 5.02040 5.08294 5.26153 5.39560 5.51373 5.56007 5.64589 5.75504 5.83109 6.14276 6.31691 6.85199 6.97318 7.39040 8.93592 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.004153 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.701635 B = 6740.385983 C = 7370.552723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.028 4.028 3 C -0.118 4.118 4 C -0.028 4.028 5 C -0.667 4.667 6 S 2.709 3.291 7 O -0.995 6.995 8 O -0.972 6.972 9 N -1.098 6.098 10 C 0.135 3.865 11 C 0.025 3.975 12 C -0.543 4.543 13 H 0.069 0.931 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.967 3.033 17 H -0.266 1.266 18 H -0.285 1.285 19 H -0.264 1.264 20 C 0.069 3.931 21 C 0.174 3.826 22 N -0.285 5.285 23 N -0.047 5.047 24 N -0.195 5.195 25 H 0.497 0.503 26 N -0.268 5.268 27 C -0.105 4.105 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.175 0.825 32 H 0.156 0.844 33 H 0.421 0.579 34 H 0.059 0.941 35 H 0.067 0.933 36 H -0.001 1.001 37 H 0.000 1.000 38 H 0.264 0.736 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.460 -2.260 14.666 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.028 4.028 3 C -0.137 4.137 4 C -0.048 4.048 5 C -0.757 4.757 6 S 2.801 3.199 7 O -0.985 6.985 8 O -0.961 6.961 9 N -0.861 5.861 10 C 0.009 3.991 11 C -0.013 4.013 12 C -0.582 4.582 13 H 0.087 0.913 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.792 3.208 17 H -0.191 1.191 18 H -0.211 1.211 19 H -0.189 1.189 20 C 0.065 3.935 21 C -0.106 4.106 22 N -0.157 5.157 23 N -0.042 5.042 24 N -0.047 5.047 25 H 0.357 0.643 26 N -0.121 5.121 27 C -0.126 4.126 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.192 0.808 32 H 0.173 0.827 33 H 0.258 0.742 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.017 0.983 37 H 0.018 0.982 38 H 0.072 0.928 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.324 -2.256 15.194 23.911 hybrid contribution -0.177 -0.905 -1.053 1.400 sum -18.501 -3.162 14.141 23.500 Atomic orbital electron populations 1.21040 0.87042 1.05037 1.04456 1.20604 0.98689 0.91768 0.91752 1.21766 0.93001 0.99990 0.98993 1.21227 0.96050 0.96055 0.91451 1.30730 1.26731 0.99141 1.19095 1.01070 0.74266 0.72113 0.72489 1.93510 1.81791 1.36222 1.87020 1.93534 1.81791 1.66393 1.54377 1.55380 1.71025 1.39061 1.20597 1.21245 0.99089 0.96661 0.82073 1.19094 0.94335 0.95277 0.92624 1.21534 1.21502 1.21678 0.93464 0.91317 1.25963 0.94678 0.95569 1.03388 1.70104 1.25426 1.31255 1.30380 0.85467 0.78476 0.78896 0.78004 1.19095 1.21060 1.18919 1.16780 0.93432 0.84630 0.98665 1.23962 0.88763 0.93833 1.04067 1.75932 1.13778 1.08337 1.17699 1.78878 1.11541 0.99149 1.14626 1.47778 1.00323 1.13415 1.43143 0.64311 1.74720 1.17721 0.98801 1.20864 1.21411 0.90815 1.00576 0.99778 0.88555 0.89008 0.89910 0.80804 0.82670 0.74181 0.92279 0.91426 0.98272 0.98192 0.92762 0.82384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.01 71.24 0.71 -0.21 16 2 C -0.03 -0.44 5.88 -19.90 -0.12 -0.56 16 3 C -0.12 -2.01 9.69 22.31 0.22 -1.80 16 4 C -0.03 -0.69 9.54 22.24 0.21 -0.48 16 5 C -0.67 -20.22 5.89 22.47 0.13 -20.08 16 6 S 2.71 100.52 4.91 -56.49 -0.28 100.24 16 7 O -1.00 -40.43 16.46 -128.00 -2.11 -42.54 16 8 O -0.97 -39.22 15.07 -128.00 -1.93 -41.15 16 9 N -1.10 -43.73 4.86 -187.50 -0.91 -44.64 16 10 C 0.14 5.87 6.16 86.38 0.53 6.40 16 11 C 0.03 1.36 5.12 29.85 0.15 1.51 16 12 C -0.54 -30.67 9.11 25.60 0.23 -30.43 16 13 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 14 C 0.00 0.12 5.46 84.65 0.46 0.59 16 15 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 16 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 18 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 19 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 20 C 0.07 1.96 5.87 -20.04 -0.12 1.84 16 21 C 0.17 5.30 7.59 137.38 1.04 6.34 16 22 N -0.28 -9.83 5.62 -52.18 -0.29 -10.12 16 23 N -0.05 -1.36 13.47 37.02 0.50 -0.87 16 24 N -0.20 -3.98 7.90 37.02 0.29 -3.68 16 25 H 0.50 4.39 8.96 -347.55 -3.12 1.28 16 26 N -0.27 -6.47 12.10 -52.13 -0.63 -7.10 16 27 C -0.10 -2.17 9.35 22.47 0.21 -1.96 16 28 H 0.10 0.49 8.14 -2.39 -0.02 0.48 16 29 H 0.09 0.47 8.08 -2.39 -0.02 0.45 16 30 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 31 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.16 3.54 7.34 -2.91 -0.02 3.52 16 33 H 0.42 17.00 7.15 -96.75 -0.69 16.31 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.07 2.90 7.75 -2.39 -0.02 2.88 16 36 H 0.00 -0.07 8.14 -2.38 -0.02 -0.08 16 37 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.16 2.57 7.90 -2.91 -0.02 2.55 16 Total: -1.00 -80.97 346.13 -2.06 -83.03 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -2.68 Total: 16.21 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 3.67 Total: -38.84 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -0.76 Total: -122.80 kcal Atomic # 8 Polarization: -79.66 SS G_CDS: -4.04 Total: -83.69 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 100.52 SS G_CDS: -0.28 Total: 100.24 kcal Total: -80.97 -2.06 -83.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605881984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.353 kcal (2) G-P(sol) polarization free energy of solvation -80.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds