Wall clock time and date at job start Tue Mar 31 2020 20:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99982 * 2 1 4 4 O 1.20834 * 119.99758 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00444 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47429 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.46913 * 180.02562 * 6 5 3 8 8 C 1.36742 * 119.99588 * 268.24126 * 7 6 5 9 9 H 1.08004 * 119.99337 * 138.06342 * 8 7 6 10 10 C 1.39075 * 120.00755 * 318.06218 * 8 7 6 11 11 N 1.31356 * 119.99631 * 341.66935 * 10 8 7 12 12 Si 1.86797 * 120.00221 * 161.66480 * 10 8 7 13 13 H 1.48492 * 109.47213 * 90.00092 * 12 10 8 14 14 H 1.48499 * 109.46980 * 210.00477 * 12 10 8 15 15 H 1.48508 * 109.46968 * 330.00385 * 12 10 8 16 16 C 1.34778 * 120.00226 * 88.25211 * 7 6 5 17 17 O 1.21836 * 119.99501 * 3.43644 * 16 7 6 18 18 C 1.41411 * 120.00085 * 183.44639 * 16 7 6 19 19 C 1.35700 * 119.99829 * 178.02201 * 18 16 7 20 20 C 1.41668 * 119.99808 * 179.97438 * 19 18 16 21 21 C 1.36524 * 125.68048 * 179.97438 * 20 19 18 22 22 C 1.41727 * 106.59112 * 179.97438 * 21 20 19 23 23 C 1.47359 * 126.76719 * 180.02562 * 22 21 20 24 24 O 1.21517 * 119.99784 * 359.97438 * 23 22 21 25 25 O 1.34751 * 119.99820 * 179.97438 * 23 22 21 26 26 C 1.37933 * 106.46529 * 0.02562 * 22 21 20 27 27 O 1.33604 * 108.40491 * 359.97438 * 26 22 21 28 28 H 1.09005 * 109.46530 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46625 * 299.99636 * 1 2 3 30 30 H 1.08997 * 109.47412 * 59.99874 * 1 2 3 31 31 H 1.09004 * 109.47209 * 59.99670 * 5 3 2 32 32 H 1.09005 * 109.47343 * 300.00203 * 5 3 2 33 33 H 1.08996 * 109.47041 * 60.00267 * 6 5 3 34 34 H 1.08997 * 109.46809 * 299.99768 * 6 5 3 35 35 H 0.96995 * 119.99744 * 179.97438 * 11 10 8 36 36 H 1.07997 * 119.99713 * 358.01715 * 18 16 7 37 37 H 1.07999 * 119.99739 * 359.97438 * 19 18 16 38 38 H 1.08005 * 126.70392 * 359.96821 * 21 20 19 39 39 H 0.96705 * 116.99693 * 179.97438 * 25 23 22 40 40 H 1.08005 * 125.79813 * 179.73365 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0000 2.7422 0.0002 7 7 5.4630 2.8189 -0.0010 8 6 6.1448 2.8900 1.1822 9 1 7.0488 2.3153 1.3198 10 6 5.6744 3.7024 2.2083 11 7 4.8124 4.6584 1.9463 12 14 6.2681 3.4341 3.9589 13 1 7.4817 4.2546 4.2013 14 1 5.2010 3.8355 4.9105 15 1 6.5934 1.9986 4.1567 16 6 6.1369 2.8195 -1.1682 17 8 5.5277 2.8195 -2.2233 18 6 7.5510 2.8199 -1.1682 19 6 8.2295 2.7799 -2.3428 20 6 9.6462 2.7808 -2.3428 21 6 10.4425 2.7428 -3.4511 22 6 11.7818 2.7604 -2.9880 23 6 13.0014 2.7331 -3.8146 24 8 12.9135 2.6906 -5.0259 25 8 14.2140 2.7554 -3.2273 26 6 11.7187 2.8081 -1.6109 27 8 10.4330 2.8197 -1.2477 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.9557 0.7810 -0.8908 32 1 3.9564 0.7807 0.8892 33 1 3.6107 3.2357 0.8906 34 1 3.6099 3.2368 -0.8893 35 1 4.4840 5.2247 2.6620 36 1 8.0910 2.8520 -0.2335 37 1 7.6894 2.7474 -3.2775 38 1 10.1156 2.7062 -4.4799 39 1 14.9848 2.7357 -3.8109 40 1 12.5648 2.8282 -0.9400 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606453887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:51 Heat of formation + Delta-G solvation = -172.269742 kcal Electronic energy + Delta-G solvation = -27806.693857 eV Core-core repulsion = 23361.499527 eV Total energy + Delta-G solvation = -4445.194329 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.74180 -40.11321 -40.01786 -38.91341 -36.26801 -36.24715 -35.23961 -33.73410 -33.18419 -32.13122 -30.93626 -29.00798 -27.53809 -25.21388 -24.85609 -24.57198 -22.50323 -21.21970 -20.56323 -19.97066 -19.09441 -17.92620 -17.61973 -17.26455 -16.84267 -16.40278 -16.29836 -16.20788 -16.02592 -15.76540 -15.49382 -14.83007 -14.55347 -14.14840 -13.86368 -13.67805 -13.37664 -13.26330 -12.94227 -12.77794 -12.35778 -12.20949 -12.09600 -11.84419 -11.82261 -11.63047 -11.32358 -11.16941 -10.90523 -10.78962 -10.58696 -10.52842 -10.41941 -10.16008 -10.06785 -9.92651 -9.34356 -8.71457 -7.88862 -7.61264 -6.56103 -4.29352 0.79130 1.17879 2.61214 2.65512 2.67265 2.96839 2.99024 3.01678 3.10844 3.12779 3.14863 3.94354 4.32926 4.50672 4.58162 4.75636 4.85154 5.12946 5.21203 5.27599 5.29670 5.46386 5.59656 5.62819 5.73511 5.77312 5.83033 5.91722 6.13466 6.19544 6.23004 6.33408 6.50513 6.66702 6.72909 6.95717 7.04504 7.16538 7.28952 7.70945 7.73766 8.11475 8.15915 8.86742 9.25868 9.71997 10.45039 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.012688 B = 0.002603 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.342517 B =10753.929655 C =12408.160866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.124 4.124 6 C 0.127 3.873 7 N -0.418 5.418 8 C -0.353 4.353 9 H 0.095 0.905 10 C 0.049 3.951 11 N -0.844 5.844 12 Si 0.915 3.085 13 H -0.274 1.274 14 H -0.280 1.280 15 H -0.265 1.265 16 C 0.486 3.514 17 O -0.606 6.606 18 C -0.111 4.111 19 C -0.081 4.081 20 C 0.043 3.957 21 C -0.149 4.149 22 C -0.227 4.227 23 C 0.557 3.443 24 O -0.515 6.515 25 O -0.516 6.516 26 C 0.046 3.954 27 O -0.151 6.151 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.275 0.725 36 H 0.135 0.865 37 H 0.157 0.843 38 H 0.164 0.836 39 H 0.414 0.586 40 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.459 -6.631 -1.805 10.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.163 4.163 6 C 0.003 3.997 7 N -0.133 5.133 8 C -0.481 4.481 9 H 0.112 0.888 10 C -0.160 4.160 11 N -0.477 5.477 12 Si 0.741 3.259 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.190 1.190 16 C 0.279 3.721 17 O -0.494 6.494 18 C -0.132 4.132 19 C -0.102 4.102 20 C -0.005 4.005 21 C -0.168 4.168 22 C -0.230 4.230 23 C 0.402 3.598 24 O -0.404 6.404 25 O -0.328 6.328 26 C -0.027 4.027 27 O -0.044 6.044 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.152 0.848 37 H 0.174 0.826 38 H 0.181 0.819 39 H 0.273 0.727 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 7.244 -6.147 -1.932 9.695 hybrid contribution 0.706 0.021 0.537 0.887 sum 7.950 -6.127 -1.396 10.133 Atomic orbital electron populations 1.23177 0.77279 1.03076 1.02368 1.86536 1.22809 1.34333 1.84633 1.24026 0.92336 0.80927 0.71779 1.90659 1.67261 1.36225 1.45025 1.21872 0.86016 1.03024 1.05389 1.21143 0.82244 0.91077 1.05264 1.43342 1.04706 1.60319 1.04968 1.19424 1.11085 1.26963 0.90638 0.88785 1.25544 0.96431 0.93248 1.00765 1.69908 1.29415 1.14521 1.33875 0.86124 0.78757 0.79310 0.81745 1.19905 1.20528 1.18979 1.17134 0.88086 0.82505 0.84364 1.90708 1.70688 1.56811 1.31237 1.22511 0.95931 0.96152 0.98573 1.20509 0.86607 1.02592 1.00539 1.19661 0.91862 1.06147 0.82862 1.21779 0.89641 1.05347 1.00005 1.19525 0.92034 1.18225 0.93187 1.19802 0.82516 0.71774 0.85691 1.90902 1.87543 1.46630 1.15342 1.84551 1.16614 1.86141 1.45529 1.25082 0.84824 0.97982 0.94775 1.84084 1.16279 1.68846 1.35232 0.88579 0.92140 0.92141 0.88282 0.87602 0.87260 0.91135 0.91468 0.84766 0.82576 0.81880 0.72700 0.76346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.79 10.57 -39.26 -0.41 -6.20 16 3 C 0.47 8.69 7.96 36.00 0.29 8.97 16 4 O -0.50 -10.73 15.73 -18.76 -0.30 -11.02 16 5 C -0.12 -2.37 6.13 -27.89 -0.17 -2.54 16 6 C 0.13 2.93 4.27 -4.04 -0.02 2.92 16 7 N -0.42 -9.90 2.48 -118.12 -0.29 -10.19 16 8 C -0.35 -8.27 8.30 -15.05 -0.12 -8.40 16 9 H 0.09 2.06 6.86 -52.48 -0.36 1.70 16 10 C 0.05 1.17 4.98 -17.44 -0.09 1.08 16 11 N -0.84 -21.49 11.62 55.50 0.64 -20.85 16 12 Si 0.92 18.12 29.59 -169.99 -5.03 13.09 16 13 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 14 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 15 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 16 C 0.49 11.30 7.39 -15.05 -0.11 11.19 16 17 O -0.61 -15.27 15.70 5.07 0.08 -15.19 16 18 C -0.11 -2.18 8.74 -39.28 -0.34 -2.53 16 19 C -0.08 -1.39 9.37 -39.18 -0.37 -1.75 16 20 C 0.04 0.65 6.77 -38.89 -0.26 0.38 16 21 C -0.15 -2.04 10.64 -38.87 -0.41 -2.46 16 22 C -0.23 -2.83 6.16 -104.97 -0.65 -3.48 16 23 C 0.56 6.59 8.33 34.44 0.29 6.87 16 24 O -0.51 -7.62 17.72 -19.28 -0.34 -7.96 16 25 O -0.52 -4.09 13.27 -40.63 -0.54 -4.63 16 26 C 0.05 0.50 11.98 30.62 0.37 0.86 16 27 O -0.15 -2.11 10.10 5.88 0.06 -2.05 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 31 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 32 H 0.11 1.88 8.14 -51.93 -0.42 1.46 16 33 H 0.11 2.74 5.71 -51.93 -0.30 2.44 16 34 H 0.07 1.76 7.38 -51.93 -0.38 1.38 16 35 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.13 2.56 6.08 -52.49 -0.32 2.24 16 37 H 0.16 2.63 7.46 -52.49 -0.39 2.24 16 38 H 0.16 2.08 8.06 -52.48 -0.42 1.66 16 39 H 0.41 1.40 9.11 45.56 0.42 1.81 16 40 H 0.22 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 367.38 15.07 5.54 5.54 Total: -1.00 -32.59 367.38 -4.56 -37.16 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -3.43 Total: 9.70 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: -0.54 Total: 12.61 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 0.35 Total: -31.04 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -1.45 Total: -47.05 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.59 -4.56 -37.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606453887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.114 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds