Wall clock time and date at job start Tue Mar 31 2020 20:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99982 * 2 1 4 4 O 1.20834 * 119.99758 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00444 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47429 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.46913 * 180.02562 * 6 5 3 8 8 C 1.36742 * 119.99588 * 268.24126 * 7 6 5 9 9 H 1.08004 * 119.99337 * 138.06342 * 8 7 6 10 10 C 1.39075 * 120.00755 * 318.06218 * 8 7 6 11 11 N 1.31356 * 119.99631 * 341.66935 * 10 8 7 12 12 Si 1.86797 * 120.00221 * 161.66480 * 10 8 7 13 13 H 1.48492 * 109.47213 * 90.00092 * 12 10 8 14 14 H 1.48499 * 109.46980 * 210.00477 * 12 10 8 15 15 H 1.48508 * 109.46968 * 330.00385 * 12 10 8 16 16 C 1.34778 * 120.00226 * 88.25211 * 7 6 5 17 17 O 1.21836 * 119.99501 * 3.43644 * 16 7 6 18 18 C 1.41411 * 120.00085 * 183.44639 * 16 7 6 19 19 C 1.35700 * 119.99829 * 178.02201 * 18 16 7 20 20 C 1.41668 * 119.99808 * 179.97438 * 19 18 16 21 21 C 1.36524 * 125.68048 * 179.97438 * 20 19 18 22 22 C 1.41727 * 106.59112 * 179.97438 * 21 20 19 23 23 C 1.47359 * 126.76719 * 180.02562 * 22 21 20 24 24 O 1.21517 * 119.99784 * 359.97438 * 23 22 21 25 25 O 1.34751 * 119.99820 * 179.97438 * 23 22 21 26 26 C 1.37933 * 106.46529 * 0.02562 * 22 21 20 27 27 O 1.33604 * 108.40491 * 359.97438 * 26 22 21 28 28 H 1.09005 * 109.46530 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46625 * 299.99636 * 1 2 3 30 30 H 1.08997 * 109.47412 * 59.99874 * 1 2 3 31 31 H 1.09004 * 109.47209 * 59.99670 * 5 3 2 32 32 H 1.09005 * 109.47343 * 300.00203 * 5 3 2 33 33 H 1.08996 * 109.47041 * 60.00267 * 6 5 3 34 34 H 1.08997 * 109.46809 * 299.99768 * 6 5 3 35 35 H 0.96995 * 119.99744 * 179.97438 * 11 10 8 36 36 H 1.07997 * 119.99713 * 358.01715 * 18 16 7 37 37 H 1.07999 * 119.99739 * 359.97438 * 19 18 16 38 38 H 1.08005 * 126.70392 * 359.96821 * 21 20 19 39 39 H 0.96705 * 116.99693 * 179.97438 * 25 23 22 40 40 H 1.08005 * 125.79813 * 179.73365 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0000 2.7422 0.0002 7 7 5.4630 2.8189 -0.0010 8 6 6.1448 2.8900 1.1822 9 1 7.0488 2.3153 1.3198 10 6 5.6744 3.7024 2.2083 11 7 4.8124 4.6584 1.9463 12 14 6.2681 3.4341 3.9589 13 1 7.4817 4.2546 4.2013 14 1 5.2010 3.8355 4.9105 15 1 6.5934 1.9986 4.1567 16 6 6.1369 2.8195 -1.1682 17 8 5.5277 2.8195 -2.2233 18 6 7.5510 2.8199 -1.1682 19 6 8.2295 2.7799 -2.3428 20 6 9.6462 2.7808 -2.3428 21 6 10.4425 2.7428 -3.4511 22 6 11.7818 2.7604 -2.9880 23 6 13.0014 2.7331 -3.8146 24 8 12.9135 2.6906 -5.0259 25 8 14.2140 2.7554 -3.2273 26 6 11.7187 2.8081 -1.6109 27 8 10.4330 2.8197 -1.2477 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.9557 0.7810 -0.8908 32 1 3.9564 0.7807 0.8892 33 1 3.6107 3.2357 0.8906 34 1 3.6099 3.2368 -0.8893 35 1 4.4840 5.2247 2.6620 36 1 8.0910 2.8520 -0.2335 37 1 7.6894 2.7474 -3.2775 38 1 10.1156 2.7062 -4.4799 39 1 14.9848 2.7357 -3.8109 40 1 12.5648 2.8282 -0.9400 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606453887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:50 Heat of formation + Delta-G solvation = -193.703307 kcal Electronic energy + Delta-G solvation = -27807.623286 eV Core-core repulsion = 23361.499527 eV Total energy + Delta-G solvation = -4446.123758 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.80850 -41.58597 -40.89356 -40.63443 -37.70605 -37.05824 -36.96525 -35.14795 -34.28333 -33.87815 -32.57829 -30.25152 -28.70311 -26.98596 -26.16080 -25.63367 -23.93269 -22.30366 -21.86781 -21.35930 -20.64452 -19.03810 -18.77452 -18.63187 -18.33679 -17.75539 -17.63845 -17.45219 -17.43443 -16.88895 -16.40504 -16.37292 -16.19228 -15.53777 -15.45333 -15.00857 -14.81529 -14.34041 -14.25096 -13.89453 -13.78884 -13.70546 -13.56585 -13.21230 -13.09325 -12.87085 -12.74648 -12.61909 -12.48191 -12.11571 -11.93364 -11.86182 -11.79632 -11.68392 -11.62028 -11.11802 -11.02591 -10.53755 -9.56060 -9.01094 -8.33198 -6.14073 -0.45172 0.18919 1.11969 1.37543 1.49289 1.52483 1.63161 1.69530 1.73668 2.04300 2.10089 2.30856 2.63781 3.01726 3.10070 3.54488 3.76813 3.83028 4.01061 4.11234 4.25346 4.30613 4.31765 4.31827 4.42714 4.58022 4.62911 4.69480 4.73170 4.92135 4.96108 5.03845 5.23228 5.24289 5.36008 5.44878 5.49370 5.55677 5.89695 5.97080 6.35242 6.68884 6.98068 7.07337 7.48584 7.94245 8.69399 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.012688 B = 0.002603 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.342517 B =10753.929655 C =12408.160866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.474 3.526 4 O -0.538 6.538 5 C -0.114 4.114 6 C 0.134 3.866 7 N -0.433 5.433 8 C -0.361 4.361 9 H 0.108 0.892 10 C 0.006 3.994 11 N -0.890 5.890 12 Si 0.984 3.016 13 H -0.269 1.269 14 H -0.287 1.287 15 H -0.251 1.251 16 C 0.483 3.517 17 O -0.639 6.639 18 C -0.159 4.159 19 C -0.031 4.031 20 C 0.003 3.997 21 C -0.126 4.126 22 C -0.255 4.255 23 C 0.567 3.433 24 O -0.552 6.552 25 O -0.500 6.500 26 C 0.091 3.909 27 O -0.161 6.161 28 H 0.139 0.861 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.037 0.963 35 H 0.273 0.727 36 H 0.138 0.862 37 H 0.154 0.846 38 H 0.169 0.831 39 H 0.436 0.564 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.395 -8.235 -1.029 14.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.318 3.682 4 O -0.428 6.428 5 C -0.152 4.152 6 C 0.010 3.990 7 N -0.149 5.149 8 C -0.488 4.488 9 H 0.126 0.874 10 C -0.199 4.199 11 N -0.525 5.525 12 Si 0.807 3.193 13 H -0.194 1.194 14 H -0.213 1.213 15 H -0.174 1.174 16 C 0.278 3.722 17 O -0.530 6.530 18 C -0.179 4.179 19 C -0.052 4.052 20 C -0.045 4.045 21 C -0.145 4.145 22 C -0.258 4.258 23 C 0.414 3.586 24 O -0.445 6.445 25 O -0.314 6.314 26 C 0.019 3.981 27 O -0.054 6.054 28 H 0.157 0.843 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.140 0.860 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.156 0.844 37 H 0.172 0.828 38 H 0.187 0.813 39 H 0.299 0.701 40 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 10.216 -7.788 -1.151 12.897 hybrid contribution 0.060 0.487 0.089 0.499 sum 10.275 -7.301 -1.062 12.650 Atomic orbital electron populations 1.23590 0.74746 1.05908 1.02447 1.86506 1.25167 1.32269 1.83833 1.23812 0.92079 0.81297 0.71039 1.90649 1.67858 1.37519 1.46751 1.21650 0.86876 1.00308 1.06379 1.20877 0.82481 0.93281 1.02407 1.43498 1.04731 1.61206 1.05451 1.19780 1.11552 1.26960 0.90489 0.87424 1.26421 0.96388 0.92597 1.04494 1.70045 1.31531 1.16039 1.34884 0.85077 0.77890 0.79832 0.76531 1.19409 1.21260 1.17429 1.17679 0.89532 0.81257 0.83749 1.90662 1.71735 1.58392 1.32181 1.22164 0.93875 1.02158 0.99696 1.20564 0.87976 0.97169 0.99485 1.19288 0.91113 1.10349 0.83743 1.22022 0.90554 1.01946 0.99990 1.19682 0.91932 1.20014 0.94160 1.19601 0.83289 0.70866 0.84887 1.90901 1.88167 1.48605 1.16824 1.84485 1.16211 1.85145 1.45552 1.26085 0.84560 0.92547 0.94922 1.84101 1.17417 1.68942 1.34987 0.84335 0.92070 0.92187 0.87686 0.86005 0.89503 0.94404 0.91733 0.84413 0.82835 0.81337 0.70100 0.71584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.78 16 2 O -0.36 -11.15 10.57 -51.43 -0.54 -11.69 16 3 C 0.47 18.02 7.96 71.23 0.57 18.58 16 4 O -0.54 -23.80 15.73 21.94 0.35 -23.45 16 5 C -0.11 -4.47 6.13 29.85 0.18 -4.28 16 6 C 0.13 6.57 4.27 86.38 0.37 6.94 16 7 N -0.43 -21.45 2.48 -645.79 -1.60 -23.05 16 8 C -0.36 -17.23 8.30 84.13 0.70 -16.53 16 9 H 0.11 4.72 6.86 -2.91 -0.02 4.70 16 10 C 0.01 0.27 4.98 84.96 0.42 0.69 16 11 N -0.89 -47.32 11.62 21.69 0.25 -47.07 16 12 Si 0.98 37.23 29.59 68.60 2.03 39.26 16 13 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 14 H -0.29 -11.06 7.11 99.48 0.71 -10.35 16 15 H -0.25 -8.80 7.11 99.48 0.71 -8.10 16 16 C 0.48 23.46 7.39 85.02 0.63 24.09 16 17 O -0.64 -33.81 15.70 -4.78 -0.08 -33.88 16 18 C -0.16 -6.38 8.74 22.46 0.20 -6.19 16 19 C -0.03 -1.06 9.37 22.53 0.21 -0.85 16 20 C 0.00 0.08 6.77 22.72 0.15 0.23 16 21 C -0.13 -3.21 10.64 22.73 0.24 -2.97 16 22 C -0.26 -5.54 6.16 -20.09 -0.12 -5.66 16 23 C 0.57 11.63 8.33 70.22 0.58 12.21 16 24 O -0.55 -15.26 17.72 19.78 0.35 -14.91 16 25 O -0.50 -5.79 13.27 -56.62 -0.75 -6.54 16 26 C 0.09 1.58 11.98 67.75 0.81 2.39 16 27 O -0.16 -4.06 10.10 -1.89 -0.02 -4.08 16 28 H 0.14 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 30 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 31 H 0.10 3.99 8.14 -2.38 -0.02 3.97 16 32 H 0.12 4.37 8.14 -2.38 -0.02 4.35 16 33 H 0.09 4.65 5.71 -2.39 -0.01 4.63 16 34 H 0.04 2.04 7.38 -2.39 -0.02 2.02 16 35 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 36 H 0.14 5.34 6.08 -2.91 -0.02 5.32 16 37 H 0.15 5.25 7.46 -2.91 -0.02 5.23 16 38 H 0.17 4.05 8.06 -2.91 -0.02 4.03 16 39 H 0.44 1.17 9.11 -74.05 -0.67 0.49 16 40 H 0.27 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -75.01 367.38 6.57 -68.44 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.44 Total: 26.53 kcal Atomic # 6 Polarization: 24.30 SS G_CDS: 6.14 Total: 30.44 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -1.35 Total: -70.12 kcal Atomic # 8 Polarization: -93.86 SS G_CDS: -0.69 Total: -94.56 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Total: -75.01 6.57 -68.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606453887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.263 kcal (2) G-P(sol) polarization free energy of solvation -75.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds