Wall clock time and date at job start Tue Mar 31 2020 20:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34752 * 117.00139 * 2 1 4 4 O 1.21525 * 119.99539 * 359.97438 * 3 2 1 5 5 C 1.47359 * 120.00270 * 180.02562 * 3 2 1 6 6 C 1.37936 * 126.76388 * 0.15746 * 5 3 2 7 7 O 1.33607 * 108.39619 * 180.29516 * 6 5 3 8 8 C 1.34895 * 109.90173 * 359.72418 * 7 6 5 9 9 C 1.41674 * 125.67586 * 179.97438 * 8 7 6 10 10 C 1.35692 * 120.00047 * 5.03372 * 9 8 7 11 11 C 1.41415 * 119.99963 * 30.02242 * 10 9 8 12 12 O 1.21823 * 120.00211 * 8.16174 * 11 10 9 13 13 N 1.34779 * 119.99551 * 188.17056 * 11 10 9 14 14 C 1.36736 * 120.00156 * 354.80785 * 13 11 10 15 15 H 1.07995 * 120.00466 * 321.75571 * 14 13 11 16 16 C 1.39080 * 119.99964 * 141.76294 * 14 13 11 17 17 N 1.31359 * 119.99587 * 349.17253 * 16 14 13 18 18 Si 1.86794 * 120.00198 * 169.18195 * 16 14 13 19 19 H 1.48502 * 109.47519 * 89.99632 * 18 16 14 20 20 H 1.48507 * 109.46927 * 209.99371 * 18 16 14 21 21 H 1.48502 * 109.47369 * 329.99489 * 18 16 14 22 22 C 1.46507 * 119.99769 * 174.81757 * 13 11 10 23 23 C 1.52993 * 109.47545 * 89.99180 * 22 13 11 24 24 C 1.50693 * 109.47275 * 180.02562 * 23 22 13 25 25 O 1.20831 * 119.99864 * 0.02562 * 24 23 22 26 26 O 1.34235 * 120.00209 * 180.02562 * 24 23 22 27 27 C 1.36525 * 108.64286 * 0.02562 * 8 7 6 28 28 H 1.09001 * 109.47180 * 300.00168 * 1 2 3 29 29 H 1.09007 * 109.47429 * 59.99982 * 1 2 3 30 30 H 1.09000 * 109.47443 * 179.97438 * 1 2 3 31 31 H 1.08000 * 125.80097 * 0.04306 * 6 5 3 32 32 H 1.07997 * 119.99793 * 185.03522 * 9 8 7 33 33 H 1.08003 * 120.00295 * 210.01797 * 10 9 8 34 34 H 0.96996 * 119.99927 * 185.02350 * 17 16 14 35 35 H 1.09004 * 109.46649 * 209.99896 * 22 13 11 36 36 H 1.09009 * 109.46704 * 329.99148 * 22 13 11 37 37 H 1.08999 * 109.47088 * 300.00337 * 23 22 13 38 38 H 1.09000 * 109.47168 * 60.00063 * 23 22 13 39 39 H 0.96697 * 116.99597 * 180.02562 * 26 24 23 40 40 H 1.07996 * 126.70579 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4018 2.2198 -0.0005 5 6 3.5353 1.2778 -0.0006 6 6 4.4176 0.2175 -0.0042 7 8 5.6618 0.7043 0.0031 8 6 5.6273 2.0528 0.0053 9 6 6.7566 2.9082 0.0132 10 6 8.0048 2.3849 -0.0839 11 6 8.2133 1.1808 -0.7955 12 8 7.3059 0.6920 -1.4448 13 7 9.4161 0.5739 -0.7551 14 6 10.4641 1.1751 -0.1148 15 1 10.5960 2.2448 -0.1818 16 6 11.3605 0.4088 0.6225 17 7 11.0894 -0.8499 0.8827 18 14 12.9496 1.1695 1.2431 19 1 12.7258 1.7543 2.5897 20 1 13.9999 0.1230 1.3263 21 1 13.3866 2.2361 0.3067 22 6 9.6006 -0.7298 -1.3975 23 6 10.0378 -0.5258 -2.8493 24 6 10.2270 -1.8669 -3.5102 25 8 10.0316 -2.8818 -2.8842 26 8 10.6125 -1.9340 -4.7942 27 6 4.3230 2.4560 -0.0001 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 4.1484 -0.8284 -0.0078 32 1 6.6240 3.9768 0.0964 33 1 8.8391 2.8881 0.3823 34 1 11.6778 -1.3640 1.4574 35 1 10.3658 -1.2930 -0.8632 36 1 8.6610 -1.2821 -1.3751 37 1 9.2726 0.0374 -3.3835 38 1 10.9774 0.0264 -2.8717 39 1 10.7202 -2.8164 -5.1746 40 1 3.9620 3.4738 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606629990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:51 Heat of formation + Delta-G solvation = -156.979147 kcal Electronic energy + Delta-G solvation = -28752.783070 eV Core-core repulsion = 24308.251791 eV Total energy + Delta-G solvation = -4444.531279 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.28145 -40.06247 -39.82933 -38.80428 -36.36785 -35.84894 -35.23564 -33.47589 -32.77727 -31.96847 -30.81045 -28.93871 -27.57034 -25.37755 -24.72671 -23.74750 -22.48985 -20.95472 -20.54424 -19.83846 -19.07470 -17.90207 -17.60732 -17.05574 -16.46867 -16.37998 -16.10274 -15.93688 -15.70751 -15.57722 -15.42049 -14.63525 -14.46385 -13.94158 -13.62128 -13.43742 -13.28930 -13.06618 -12.70600 -12.67191 -12.53335 -12.36295 -12.09357 -11.86386 -11.64341 -11.29015 -11.15873 -11.10255 -10.86772 -10.83709 -10.56658 -10.50012 -10.14753 -10.08524 -9.86189 -9.48933 -9.31394 -8.63965 -7.71029 -7.38663 -6.48338 -4.25642 0.95016 1.44728 2.67834 2.68152 2.88755 3.03844 3.11393 3.13406 3.32970 3.36016 3.45043 3.94958 4.32302 4.75100 4.84870 4.91673 4.98655 5.05707 5.05970 5.16309 5.37189 5.61007 5.62094 5.74228 5.82752 5.93767 6.04076 6.12479 6.30975 6.35243 6.37734 6.44844 6.65928 6.77217 6.84534 6.99111 7.16884 7.44198 7.48732 7.76407 7.81788 8.21678 8.31517 8.89965 9.32257 9.77342 10.47929 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.003160 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.493777 B = 8857.838793 C =10369.114472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.359 6.359 3 C 0.542 3.458 4 O -0.515 6.515 5 C -0.242 4.242 6 C 0.055 3.945 7 O -0.103 6.103 8 C 0.049 3.951 9 C -0.079 4.079 10 C -0.131 4.131 11 C 0.481 3.519 12 O -0.590 6.590 13 N -0.420 5.420 14 C -0.342 4.342 15 H 0.095 0.905 16 C 0.043 3.957 17 N -0.855 5.855 18 Si 0.921 3.079 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.267 1.267 22 C 0.113 3.887 23 C -0.123 4.123 24 C 0.483 3.517 25 O -0.514 6.514 26 O -0.525 6.525 27 C -0.156 4.156 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.212 0.788 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.275 0.725 35 H 0.132 0.868 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.401 0.599 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.859 1.940 -2.362 8.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.276 6.276 3 C 0.388 3.612 4 O -0.405 6.405 5 C -0.244 4.244 6 C -0.020 4.020 7 O 0.007 5.993 8 C -0.001 4.001 9 C -0.100 4.100 10 C -0.152 4.152 11 C 0.274 3.726 12 O -0.478 6.478 13 N -0.136 5.136 14 C -0.470 4.470 15 H 0.113 0.887 16 C -0.164 4.164 17 N -0.491 5.491 18 Si 0.747 3.253 19 H -0.200 1.200 20 H -0.206 1.206 21 H -0.191 1.191 22 C -0.010 4.010 23 C -0.162 4.162 24 C 0.325 3.675 25 O -0.401 6.401 26 O -0.337 6.337 27 C -0.176 4.176 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.229 0.771 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.086 0.914 35 H 0.150 0.850 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.258 0.742 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.146 1.716 -2.274 8.630 hybrid contribution 0.597 -0.165 0.056 0.622 sum -7.549 1.552 -2.219 8.020 Atomic orbital electron populations 1.23234 0.76246 1.03558 1.02498 1.86558 1.23369 1.32926 1.84732 1.20213 0.87781 0.81156 0.72018 1.90809 1.66627 1.36038 1.47006 1.19466 0.89783 0.95054 1.20116 1.25125 0.81239 0.99288 0.96382 1.84495 1.27815 1.20950 1.66028 1.19453 0.94396 0.80715 1.05539 1.20400 0.89565 0.97110 1.02901 1.22608 0.97775 0.98190 0.96620 1.17142 0.82837 0.86898 0.85745 1.90717 1.42357 1.67625 1.47057 1.43421 1.08231 1.17366 1.44623 1.19526 1.04099 0.93761 1.29650 0.88742 1.25545 0.99794 0.95456 0.95580 1.69596 1.38017 1.08068 1.33420 0.86012 0.80961 0.78926 0.79415 1.19955 1.20595 1.19133 1.21516 1.04096 0.87356 0.88080 1.21838 1.04628 0.90897 0.98791 1.23806 0.71782 0.92987 0.78900 1.90700 1.47155 1.37959 1.64328 1.84596 1.81080 1.39035 1.28986 1.21662 0.90706 0.98638 1.06553 0.91949 0.91947 0.88099 0.77148 0.83183 0.84018 0.91386 0.85033 0.91772 0.88612 0.87932 0.74189 0.82609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.57 101.05 1.07 1.42 16 2 O -0.36 -4.70 10.41 -40.63 -0.42 -5.12 16 3 C 0.54 8.44 7.96 34.44 0.27 8.71 16 4 O -0.51 -8.96 16.73 -19.29 -0.32 -9.28 16 5 C -0.24 -3.91 6.16 -104.97 -0.65 -4.56 16 6 C 0.05 0.88 11.98 30.62 0.37 1.24 16 7 O -0.10 -2.03 7.13 -18.92 -0.13 -2.16 16 8 C 0.05 0.87 6.04 -38.89 -0.23 0.64 16 9 C -0.08 -1.29 9.77 -39.18 -0.38 -1.67 16 10 C -0.13 -2.48 9.09 -39.28 -0.36 -2.84 16 11 C 0.48 10.91 6.86 -15.05 -0.10 10.81 16 12 O -0.59 -14.33 12.66 -19.73 -0.25 -14.58 16 13 N -0.42 -9.83 2.53 -118.12 -0.30 -10.13 16 14 C -0.34 -7.88 8.39 -15.05 -0.13 -8.00 16 15 H 0.10 2.01 6.84 -52.49 -0.36 1.65 16 16 C 0.04 1.01 5.20 -17.44 -0.09 0.92 16 17 N -0.86 -21.40 10.87 55.50 0.60 -20.79 16 18 Si 0.92 17.96 29.57 -169.99 -5.03 12.94 16 19 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 22 C 0.11 2.63 4.24 -4.04 -0.02 2.61 16 23 C -0.12 -2.38 6.13 -27.89 -0.17 -2.55 16 24 C 0.48 8.83 8.33 36.00 0.30 9.13 16 25 O -0.51 -10.90 16.74 -18.75 -0.31 -11.22 16 26 O -0.53 -7.51 13.42 -39.27 -0.53 -8.03 16 27 C -0.16 -2.54 10.64 -38.87 -0.41 -2.95 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.21 2.63 8.06 -52.49 -0.42 2.20 16 32 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 33 H 0.14 2.45 6.46 -52.48 -0.34 2.11 16 34 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 35 H 0.13 3.34 5.08 -51.93 -0.26 3.07 16 36 H 0.06 1.60 7.45 -51.92 -0.39 1.21 16 37 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 38 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 39 H 0.40 3.77 9.10 45.56 0.41 4.19 16 40 H 0.16 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 360.84 15.07 5.44 5.44 Total: -1.00 -32.36 360.84 -5.24 -37.60 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -3.45 Total: 12.42 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -0.53 Total: 12.90 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 0.31 Total: -30.92 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -1.97 Total: -50.39 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.36 -5.24 -37.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606629990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.375 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds