Wall clock time and date at job start Tue Mar 31 2020 20:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34752 * 117.00139 * 2 1 4 4 O 1.21525 * 119.99539 * 359.97438 * 3 2 1 5 5 C 1.47359 * 120.00270 * 180.02562 * 3 2 1 6 6 C 1.37936 * 126.76388 * 0.15746 * 5 3 2 7 7 O 1.33607 * 108.39619 * 180.29516 * 6 5 3 8 8 C 1.34895 * 109.90173 * 359.72418 * 7 6 5 9 9 C 1.41674 * 125.67586 * 179.97438 * 8 7 6 10 10 C 1.35692 * 120.00047 * 5.03372 * 9 8 7 11 11 C 1.41415 * 119.99963 * 30.02242 * 10 9 8 12 12 O 1.21823 * 120.00211 * 8.16174 * 11 10 9 13 13 N 1.34779 * 119.99551 * 188.17056 * 11 10 9 14 14 C 1.36736 * 120.00156 * 354.80785 * 13 11 10 15 15 H 1.07995 * 120.00466 * 321.75571 * 14 13 11 16 16 C 1.39080 * 119.99964 * 141.76294 * 14 13 11 17 17 N 1.31359 * 119.99587 * 349.17253 * 16 14 13 18 18 Si 1.86794 * 120.00198 * 169.18195 * 16 14 13 19 19 H 1.48502 * 109.47519 * 89.99632 * 18 16 14 20 20 H 1.48507 * 109.46927 * 209.99371 * 18 16 14 21 21 H 1.48502 * 109.47369 * 329.99489 * 18 16 14 22 22 C 1.46507 * 119.99769 * 174.81757 * 13 11 10 23 23 C 1.52993 * 109.47545 * 89.99180 * 22 13 11 24 24 C 1.50693 * 109.47275 * 180.02562 * 23 22 13 25 25 O 1.20831 * 119.99864 * 0.02562 * 24 23 22 26 26 O 1.34235 * 120.00209 * 180.02562 * 24 23 22 27 27 C 1.36525 * 108.64286 * 0.02562 * 8 7 6 28 28 H 1.09001 * 109.47180 * 300.00168 * 1 2 3 29 29 H 1.09007 * 109.47429 * 59.99982 * 1 2 3 30 30 H 1.09000 * 109.47443 * 179.97438 * 1 2 3 31 31 H 1.08000 * 125.80097 * 0.04306 * 6 5 3 32 32 H 1.07997 * 119.99793 * 185.03522 * 9 8 7 33 33 H 1.08003 * 120.00295 * 210.01797 * 10 9 8 34 34 H 0.96996 * 119.99927 * 185.02350 * 17 16 14 35 35 H 1.09004 * 109.46649 * 209.99896 * 22 13 11 36 36 H 1.09009 * 109.46704 * 329.99148 * 22 13 11 37 37 H 1.08999 * 109.47088 * 300.00337 * 23 22 13 38 38 H 1.09000 * 109.47168 * 60.00063 * 23 22 13 39 39 H 0.96697 * 116.99597 * 180.02562 * 26 24 23 40 40 H 1.07996 * 126.70579 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4018 2.2198 -0.0005 5 6 3.5353 1.2778 -0.0006 6 6 4.4176 0.2175 -0.0042 7 8 5.6618 0.7043 0.0031 8 6 5.6273 2.0528 0.0053 9 6 6.7566 2.9082 0.0132 10 6 8.0048 2.3849 -0.0839 11 6 8.2133 1.1808 -0.7955 12 8 7.3059 0.6920 -1.4448 13 7 9.4161 0.5739 -0.7551 14 6 10.4641 1.1751 -0.1148 15 1 10.5960 2.2448 -0.1818 16 6 11.3605 0.4088 0.6225 17 7 11.0894 -0.8499 0.8827 18 14 12.9496 1.1695 1.2431 19 1 12.7258 1.7543 2.5897 20 1 13.9999 0.1230 1.3263 21 1 13.3866 2.2361 0.3067 22 6 9.6006 -0.7298 -1.3975 23 6 10.0378 -0.5258 -2.8493 24 6 10.2270 -1.8669 -3.5102 25 8 10.0316 -2.8818 -2.8842 26 8 10.6125 -1.9340 -4.7942 27 6 4.3230 2.4560 -0.0001 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 4.1484 -0.8284 -0.0078 32 1 6.6240 3.9768 0.0964 33 1 8.8391 2.8881 0.3823 34 1 11.6778 -1.3640 1.4574 35 1 10.3658 -1.2930 -0.8632 36 1 8.6610 -1.2821 -1.3751 37 1 9.2726 0.0374 -3.3835 38 1 10.9774 0.0264 -2.8717 39 1 10.7202 -2.8164 -5.1746 40 1 3.9620 3.4738 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606629990.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:50 Heat of formation + Delta-G solvation = -176.807527 kcal Electronic energy + Delta-G solvation = -28753.642893 eV Core-core repulsion = 24308.251791 eV Total energy + Delta-G solvation = -4445.391102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.63193 -41.33308 -41.20404 -40.44566 -37.50480 -37.28780 -36.86202 -34.93114 -34.13329 -33.68361 -32.44298 -30.21969 -28.52639 -27.10532 -26.28459 -24.95484 -23.92497 -22.31907 -21.94076 -21.31191 -20.57973 -19.37113 -19.02928 -18.20326 -18.06011 -17.57240 -17.52951 -17.44167 -17.02759 -16.94790 -16.82541 -16.21158 -15.97009 -15.52691 -15.01894 -14.79559 -14.36763 -14.30741 -14.22618 -14.03164 -13.96572 -13.74566 -13.52191 -13.15594 -12.87241 -12.86781 -12.75470 -12.56551 -12.51951 -12.06424 -11.84847 -11.84050 -11.79713 -11.64585 -11.23737 -11.04369 -10.80984 -10.37053 -9.46603 -8.77440 -8.21467 -6.05452 -0.42569 0.19899 1.20042 1.45799 1.53323 1.59017 1.62154 1.63813 2.04440 2.06119 2.14259 2.35411 2.68557 3.21368 3.26366 3.54671 3.83634 3.94121 4.06560 4.17787 4.27727 4.33652 4.36713 4.44839 4.54070 4.64290 4.72397 4.75695 4.80150 4.98260 5.05452 5.15656 5.22455 5.31396 5.39620 5.54636 5.57545 5.68126 6.03594 6.14739 6.46141 6.65015 7.01063 7.15433 7.61833 8.06062 8.76122 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.003160 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.493777 B = 8857.838793 C =10369.114472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.547 3.453 4 O -0.537 6.537 5 C -0.255 4.255 6 C 0.061 3.939 7 O -0.137 6.137 8 C 0.008 3.992 9 C -0.034 4.034 10 C -0.180 4.180 11 C 0.478 3.522 12 O -0.615 6.615 13 N -0.440 5.440 14 C -0.348 4.348 15 H 0.111 0.889 16 C -0.001 4.001 17 N -0.898 5.898 18 Si 0.988 3.012 19 H -0.271 1.271 20 H -0.290 1.290 21 H -0.253 1.253 22 C 0.121 3.879 23 C -0.114 4.114 24 C 0.494 3.506 25 O -0.549 6.549 26 O -0.508 6.508 27 C -0.135 4.135 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.135 0.865 31 H 0.239 0.761 32 H 0.199 0.801 33 H 0.156 0.844 34 H 0.271 0.729 35 H 0.110 0.890 36 H 0.031 0.969 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.426 0.574 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.714 3.530 -2.751 9.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.276 6.276 3 C 0.394 3.606 4 O -0.428 6.428 5 C -0.257 4.257 6 C -0.013 4.013 7 O -0.029 6.029 8 C -0.041 4.041 9 C -0.055 4.055 10 C -0.200 4.200 11 C 0.272 3.728 12 O -0.504 6.504 13 N -0.157 5.157 14 C -0.475 4.475 15 H 0.128 0.872 16 C -0.204 4.204 17 N -0.535 5.535 18 Si 0.811 3.189 19 H -0.197 1.197 20 H -0.216 1.216 21 H -0.177 1.177 22 C -0.004 4.004 23 C -0.153 4.153 24 C 0.338 3.662 25 O -0.440 6.440 26 O -0.322 6.322 27 C -0.154 4.154 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.153 0.847 31 H 0.255 0.745 32 H 0.216 0.784 33 H 0.173 0.827 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.050 0.950 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.287 0.713 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.007 3.319 -2.698 9.971 hybrid contribution 0.506 -0.703 0.101 0.872 sum -8.501 2.616 -2.597 9.266 Atomic orbital electron populations 1.23618 0.73913 1.05993 1.02795 1.86545 1.25600 1.31454 1.84038 1.20071 0.87435 0.81566 0.71531 1.90797 1.66976 1.36850 1.48222 1.19682 0.90531 0.95149 1.20362 1.25760 0.80318 1.00702 0.94561 1.84479 1.29473 1.22180 1.66720 1.19939 0.95652 0.80494 1.08014 1.21080 0.88087 0.99030 0.97269 1.22471 0.99524 0.97795 1.00192 1.17751 0.82173 0.87472 0.85359 1.90675 1.42989 1.68642 1.48143 1.43567 1.08956 1.17377 1.45757 1.19894 1.03913 0.94486 1.29241 0.87191 1.26366 1.02616 0.95640 0.95755 1.69758 1.39315 1.09638 1.34829 0.84995 0.76859 0.77986 0.79033 1.19651 1.21568 1.17663 1.21209 1.01565 0.87401 0.90205 1.21610 1.04998 0.91900 0.96772 1.23435 0.71143 0.91871 0.79790 1.90697 1.48898 1.38848 1.65511 1.84511 1.79933 1.41121 1.26622 1.22011 0.89994 0.99781 1.03585 0.91584 0.91773 0.84664 0.74514 0.78365 0.82680 0.91837 0.87260 0.95004 0.88411 0.86873 0.71251 0.80244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.57 113.37 1.20 1.68 16 2 O -0.36 -8.71 10.41 -56.63 -0.59 -9.30 16 3 C 0.55 16.11 7.96 70.22 0.56 16.67 16 4 O -0.54 -17.76 16.73 19.76 0.33 -17.43 16 5 C -0.25 -7.87 6.16 -20.09 -0.12 -7.99 16 6 C 0.06 1.92 11.98 67.75 0.81 2.73 16 7 O -0.14 -5.43 7.13 21.85 0.16 -5.27 16 8 C 0.01 0.27 6.04 22.72 0.14 0.40 16 9 C -0.03 -1.06 9.77 22.53 0.22 -0.84 16 10 C -0.18 -6.71 9.09 22.46 0.20 -6.51 16 11 C 0.48 22.17 6.86 85.02 0.58 22.76 16 12 O -0.62 -30.71 12.66 18.97 0.24 -30.47 16 13 N -0.44 -21.22 2.53 -645.78 -1.63 -22.85 16 14 C -0.35 -16.20 8.39 84.13 0.71 -15.49 16 15 H 0.11 4.63 6.84 -2.91 -0.02 4.61 16 16 C 0.00 -0.07 5.20 84.97 0.44 0.37 16 17 N -0.90 -46.80 10.87 21.69 0.24 -46.56 16 18 Si 0.99 36.99 29.57 68.60 2.03 39.02 16 19 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 20 H -0.29 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 22 C 0.12 5.87 4.24 86.38 0.37 6.24 16 23 C -0.11 -4.52 6.13 29.84 0.18 -4.34 16 24 C 0.49 18.15 8.33 71.23 0.59 18.74 16 25 O -0.55 -23.91 16.74 21.95 0.37 -23.54 16 26 O -0.51 -13.70 13.42 -51.46 -0.69 -14.39 16 27 C -0.13 -4.09 10.64 22.73 0.24 -3.85 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.24 5.70 8.06 -2.91 -0.02 5.68 16 32 H 0.20 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.16 5.25 6.46 -2.91 -0.02 5.23 16 34 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 35 H 0.11 5.87 5.08 -2.39 -0.01 5.86 16 36 H 0.03 1.69 7.45 -2.38 -0.02 1.67 16 37 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 38 H 0.11 4.21 8.14 -2.39 -0.02 4.19 16 39 H 0.43 7.10 9.10 -74.06 -0.67 6.43 16 40 H 0.18 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -73.13 360.84 7.01 -66.13 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: 0.44 Total: 34.11 kcal Atomic # 6 Polarization: 24.45 SS G_CDS: 6.12 Total: 30.57 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -1.40 Total: -69.42 kcal Atomic # 8 Polarization: -100.22 SS G_CDS: -0.19 Total: -100.41 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.02 kcal Total: -73.13 7.01 -66.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606629990.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.681 kcal (2) G-P(sol) polarization free energy of solvation -73.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds