Wall clock time and date at job start Tue Mar 31 2020 20:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34760 * 116.99807 * 2 1 4 4 O 1.21520 * 119.99794 * 359.97438 * 3 2 1 5 5 C 1.47355 * 120.00052 * 179.97438 * 3 2 1 6 6 C 1.37939 * 126.76535 * 359.97438 * 5 3 2 7 7 O 1.33600 * 108.40230 * 180.02562 * 6 5 3 8 8 C 1.34894 * 109.90169 * 359.97438 * 7 6 5 9 9 C 1.41675 * 125.68227 * 179.97438 * 8 7 6 10 10 C 1.35694 * 119.99511 * 0.02562 * 9 8 7 11 11 C 1.41416 * 119.99450 * 179.72963 * 10 9 8 12 12 O 1.21823 * 120.00139 * 355.87432 * 11 10 9 13 13 N 1.34773 * 119.99742 * 175.88003 * 11 10 9 14 14 C 1.36743 * 120.00117 * 5.23545 * 13 11 10 15 15 H 1.08000 * 119.99934 * 319.04958 * 14 13 11 16 16 C 1.39078 * 120.00148 * 139.05934 * 14 13 11 17 17 N 1.31359 * 120.00160 * 160.25435 * 16 14 13 18 18 Si 1.86800 * 119.99983 * 340.25058 * 16 14 13 19 19 H 1.48498 * 109.47282 * 95.01687 * 18 16 14 20 20 H 1.48507 * 109.47153 * 215.01754 * 18 16 14 21 21 H 1.48504 * 109.46910 * 335.01591 * 18 16 14 22 22 C 1.46504 * 120.00048 * 185.23079 * 13 11 10 23 23 C 1.53010 * 109.46566 * 84.97151 * 22 13 11 24 24 C 1.50700 * 109.46824 * 180.02562 * 23 22 13 25 25 O 1.20833 * 119.99841 * 359.97438 * 24 23 22 26 26 O 1.34223 * 120.00121 * 179.97438 * 24 23 22 27 27 C 1.36528 * 108.64112 * 0.23994 * 8 7 6 28 28 H 1.09009 * 109.47172 * 60.00261 * 1 2 3 29 29 H 1.08999 * 109.46965 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47366 * 300.00255 * 1 2 3 31 31 H 1.08004 * 125.79761 * 0.06770 * 6 5 3 32 32 H 1.07994 * 119.99981 * 180.02562 * 9 8 7 33 33 H 1.08000 * 120.00440 * 0.02562 * 10 9 8 34 34 H 0.96999 * 119.99480 * 179.97438 * 17 16 14 35 35 H 1.09000 * 109.47469 * 204.96736 * 22 13 11 36 36 H 1.08999 * 109.47125 * 324.97270 * 22 13 11 37 37 H 1.09000 * 109.46888 * 299.99942 * 23 22 13 38 38 H 1.08999 * 109.47301 * 60.00227 * 23 22 13 39 39 H 0.96704 * 117.00391 * 179.97438 * 26 24 23 40 40 H 1.07999 * 126.70897 * 179.73262 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4018 2.2198 -0.0005 5 6 3.5352 1.2779 0.0006 6 6 4.4176 0.2177 0.0016 7 8 5.6618 0.7044 0.0024 8 6 5.6273 2.0529 0.0013 9 6 6.7566 2.9084 0.0022 10 6 8.0070 2.3813 0.0038 11 6 9.1342 3.2352 -0.0011 12 8 8.9843 4.4414 -0.0826 13 7 10.3744 2.7145 0.0844 14 6 10.5492 1.3584 0.0678 15 1 9.8720 0.7199 0.6156 16 6 11.5992 0.8014 -0.6543 17 7 12.0128 -0.4148 -0.3797 18 14 12.4213 1.7826 -2.0147 19 1 13.6238 2.4664 -1.4745 20 1 12.8239 0.8665 -3.1120 21 1 11.4698 2.7951 -2.5391 22 6 11.5352 3.6014 0.1949 23 6 11.7507 3.9789 1.6619 24 6 12.9443 4.8917 1.7756 25 8 13.5599 5.2076 0.7849 26 8 13.3238 5.3539 2.9773 27 6 4.3230 2.4561 0.0052 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.1484 -0.8283 0.0012 32 1 6.6223 3.9799 0.0016 33 1 8.1413 1.3097 0.0040 34 1 12.7449 -0.8033 -0.8837 35 1 12.4206 3.0898 -0.1824 36 1 11.3599 4.5040 -0.3906 37 1 10.8652 4.4905 2.0392 38 1 11.9260 3.0764 2.2474 39 1 14.0956 5.9361 3.0001 40 1 3.9619 3.4739 0.0095 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606629992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:54 Heat of formation + Delta-G solvation = -164.877514 kcal Electronic energy + Delta-G solvation = -27813.779156 eV Core-core repulsion = 23368.905378 eV Total energy + Delta-G solvation = -4444.873778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.75644 -40.29775 -40.08854 -39.15130 -36.60071 -36.06132 -35.40621 -33.82541 -33.26767 -32.42354 -31.10565 -29.27855 -27.85440 -25.33317 -25.19567 -24.10610 -22.90397 -21.21853 -20.89338 -20.11354 -18.99984 -18.01825 -17.54847 -17.28452 -17.03507 -16.69598 -16.46303 -16.33441 -16.04295 -16.01446 -15.68260 -15.08505 -14.45722 -14.21301 -14.04663 -13.55141 -13.49487 -13.32424 -13.01287 -12.90362 -12.86669 -12.54928 -12.36758 -12.17845 -11.99358 -11.60220 -11.35612 -11.23404 -11.06072 -10.87990 -10.82271 -10.46947 -10.36311 -10.26098 -10.04847 -9.94761 -9.46217 -8.87041 -8.08636 -7.79327 -6.68058 -4.29904 0.73878 1.15335 2.41483 2.45571 2.59150 2.84944 3.00124 3.06163 3.17597 3.22603 3.26022 3.99921 4.13120 4.30764 4.40805 4.69821 4.76789 4.83165 4.90944 4.92182 5.19793 5.28567 5.36969 5.44045 5.57357 5.67548 5.73361 5.80344 5.98029 6.06275 6.11965 6.17562 6.27696 6.43860 6.44996 6.67988 6.80780 7.00424 7.14483 7.56698 7.85051 8.01685 8.10196 8.72785 9.09401 9.43681 10.40359 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.016307 B = 0.002429 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.604062 B =11523.977116 C =12604.463218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.359 6.359 3 C 0.540 3.460 4 O -0.507 6.507 5 C -0.228 4.228 6 C 0.050 3.950 7 O -0.149 6.149 8 C 0.037 3.963 9 C -0.071 4.071 10 C -0.121 4.121 11 C 0.498 3.502 12 O -0.598 6.598 13 N -0.446 5.446 14 C -0.354 4.354 15 H 0.111 0.889 16 C 0.073 3.927 17 N -0.846 5.846 18 Si 0.869 3.131 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.257 1.257 22 C 0.111 3.889 23 C -0.123 4.123 24 C 0.485 3.515 25 O -0.519 6.519 26 O -0.520 6.520 27 C -0.144 4.144 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.221 0.779 32 H 0.157 0.843 33 H 0.141 0.859 34 H 0.279 0.721 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.404 0.596 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.344 -0.466 3.515 12.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.276 6.276 3 C 0.385 3.615 4 O -0.396 6.396 5 C -0.230 4.230 6 C -0.023 4.023 7 O -0.042 6.042 8 C -0.011 4.011 9 C -0.092 4.092 10 C -0.142 4.142 11 C 0.292 3.708 12 O -0.486 6.486 13 N -0.165 5.165 14 C -0.480 4.480 15 H 0.128 0.872 16 C -0.137 4.137 17 N -0.480 5.480 18 Si 0.695 3.305 19 H -0.193 1.193 20 H -0.210 1.210 21 H -0.181 1.181 22 C -0.013 4.013 23 C -0.161 4.161 24 C 0.327 3.673 25 O -0.407 6.407 26 O -0.331 6.331 27 C -0.163 4.163 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.238 0.762 32 H 0.174 0.826 33 H 0.158 0.842 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.262 0.738 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.344 -0.114 3.148 12.740 hybrid contribution 0.757 0.587 -0.660 1.163 sum -11.587 0.473 2.488 11.861 Atomic orbital electron populations 1.23274 0.75843 1.03751 1.02693 1.86538 1.23683 1.32672 1.84672 1.20121 0.87622 0.81371 0.72382 1.90846 1.66486 1.36018 1.46212 1.19571 0.90239 0.94947 1.18250 1.25122 0.80119 0.99477 0.97548 1.84100 1.29613 1.21689 1.68762 1.19614 0.95105 0.79649 1.06777 1.20524 0.88938 0.98227 1.01463 1.22488 0.92396 1.02101 0.97204 1.17038 0.84359 0.87868 0.81551 1.90722 1.86725 1.15530 1.55609 1.43656 1.03824 1.06706 1.62270 1.19106 1.17047 0.79553 1.32323 0.87187 1.25413 0.96167 0.95558 0.96523 1.69706 1.25070 1.15471 1.37708 0.87014 0.80640 0.80484 0.82408 1.19285 1.20963 1.18089 1.21451 0.90594 0.95839 0.93390 1.21739 0.94044 0.98866 1.01496 1.23660 0.85089 0.78465 0.80046 1.90708 1.54936 1.56784 1.38301 1.84574 1.50383 1.63142 1.35020 1.21787 0.90422 0.99196 1.04867 0.91802 0.87923 0.91793 0.76240 0.82564 0.84173 0.91033 0.90162 0.90087 0.87382 0.86704 0.73785 0.81874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.36 -3.67 10.41 -40.65 -0.42 -4.09 16 3 C 0.54 6.87 7.96 34.44 0.27 7.14 16 4 O -0.51 -7.69 16.73 -19.28 -0.32 -8.02 16 5 C -0.23 -2.87 6.16 -104.97 -0.65 -3.52 16 6 C 0.05 0.55 11.98 30.62 0.37 0.91 16 7 O -0.15 -2.07 10.10 5.90 0.06 -2.01 16 8 C 0.04 0.54 6.77 -38.89 -0.26 0.28 16 9 C -0.07 -1.15 9.37 -39.18 -0.37 -1.52 16 10 C -0.12 -2.30 8.74 -39.28 -0.34 -2.64 16 11 C 0.50 10.90 7.36 -15.05 -0.11 10.79 16 12 O -0.60 -13.99 15.75 5.08 0.08 -13.91 16 13 N -0.45 -10.06 2.12 -118.12 -0.25 -10.31 16 14 C -0.35 -8.49 8.83 -15.05 -0.13 -8.62 16 15 H 0.11 2.71 6.94 -52.49 -0.36 2.35 16 16 C 0.07 1.83 5.29 -17.44 -0.09 1.73 16 17 N -0.85 -21.89 13.95 55.50 0.77 -21.12 16 18 Si 0.87 19.99 25.05 -169.99 -4.26 15.73 16 19 H -0.27 -6.12 6.71 56.52 0.38 -5.74 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 22 C 0.11 2.37 3.29 -4.03 -0.01 2.36 16 23 C -0.12 -2.18 6.10 -27.88 -0.17 -2.35 16 24 C 0.48 8.13 8.33 36.01 0.30 8.43 16 25 O -0.52 -10.22 16.74 -18.76 -0.31 -10.53 16 26 O -0.52 -6.73 13.42 -39.24 -0.53 -7.25 16 27 C -0.14 -1.94 10.64 -38.87 -0.41 -2.35 16 28 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.22 1.49 8.06 -52.48 -0.42 1.07 16 32 H 0.16 2.46 7.46 -52.49 -0.39 2.07 16 33 H 0.14 2.67 6.05 -52.49 -0.32 2.35 16 34 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.08 1.82 3.75 -51.93 -0.19 1.62 16 36 H 0.08 1.80 7.46 -51.93 -0.39 1.41 16 37 H 0.11 1.84 8.14 -51.93 -0.42 1.41 16 38 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 39 H 0.40 3.29 9.10 45.56 0.41 3.70 16 40 H 0.16 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -32.31 362.46 -3.62 -35.93 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -3.36 Total: 8.14 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -0.55 Total: 11.98 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.52 Total: -31.43 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -1.45 Total: -45.81 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.26 Total: 15.73 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.31 -3.62 -35.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606629992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.947 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds