Wall clock time and date at job start Tue Mar 31 2020 20:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34760 * 116.99807 * 2 1 4 4 O 1.21520 * 119.99794 * 359.97438 * 3 2 1 5 5 C 1.47355 * 120.00052 * 179.97438 * 3 2 1 6 6 C 1.37939 * 126.76535 * 359.97438 * 5 3 2 7 7 O 1.33600 * 108.40230 * 180.02562 * 6 5 3 8 8 C 1.34894 * 109.90169 * 359.97438 * 7 6 5 9 9 C 1.41675 * 125.68227 * 179.97438 * 8 7 6 10 10 C 1.35694 * 119.99511 * 0.02562 * 9 8 7 11 11 C 1.41416 * 119.99450 * 179.72963 * 10 9 8 12 12 O 1.21823 * 120.00139 * 355.87432 * 11 10 9 13 13 N 1.34773 * 119.99742 * 175.88003 * 11 10 9 14 14 C 1.36743 * 120.00117 * 5.23545 * 13 11 10 15 15 H 1.08000 * 119.99934 * 319.04958 * 14 13 11 16 16 C 1.39078 * 120.00148 * 139.05934 * 14 13 11 17 17 N 1.31359 * 120.00160 * 160.25435 * 16 14 13 18 18 Si 1.86800 * 119.99983 * 340.25058 * 16 14 13 19 19 H 1.48498 * 109.47282 * 95.01687 * 18 16 14 20 20 H 1.48507 * 109.47153 * 215.01754 * 18 16 14 21 21 H 1.48504 * 109.46910 * 335.01591 * 18 16 14 22 22 C 1.46504 * 120.00048 * 185.23079 * 13 11 10 23 23 C 1.53010 * 109.46566 * 84.97151 * 22 13 11 24 24 C 1.50700 * 109.46824 * 180.02562 * 23 22 13 25 25 O 1.20833 * 119.99841 * 359.97438 * 24 23 22 26 26 O 1.34223 * 120.00121 * 179.97438 * 24 23 22 27 27 C 1.36528 * 108.64112 * 0.23994 * 8 7 6 28 28 H 1.09009 * 109.47172 * 60.00261 * 1 2 3 29 29 H 1.08999 * 109.46965 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47366 * 300.00255 * 1 2 3 31 31 H 1.08004 * 125.79761 * 0.06770 * 6 5 3 32 32 H 1.07994 * 119.99981 * 180.02562 * 9 8 7 33 33 H 1.08000 * 120.00440 * 0.02562 * 10 9 8 34 34 H 0.96999 * 119.99480 * 179.97438 * 17 16 14 35 35 H 1.09000 * 109.47469 * 204.96736 * 22 13 11 36 36 H 1.08999 * 109.47125 * 324.97270 * 22 13 11 37 37 H 1.09000 * 109.46888 * 299.99942 * 23 22 13 38 38 H 1.08999 * 109.47301 * 60.00227 * 23 22 13 39 39 H 0.96704 * 117.00391 * 179.97438 * 26 24 23 40 40 H 1.07999 * 126.70897 * 179.73262 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4018 2.2198 -0.0005 5 6 3.5352 1.2779 0.0006 6 6 4.4176 0.2177 0.0016 7 8 5.6618 0.7044 0.0024 8 6 5.6273 2.0529 0.0013 9 6 6.7566 2.9084 0.0022 10 6 8.0070 2.3813 0.0038 11 6 9.1342 3.2352 -0.0011 12 8 8.9843 4.4414 -0.0826 13 7 10.3744 2.7145 0.0844 14 6 10.5492 1.3584 0.0678 15 1 9.8720 0.7199 0.6156 16 6 11.5992 0.8014 -0.6543 17 7 12.0128 -0.4148 -0.3797 18 14 12.4213 1.7826 -2.0147 19 1 13.6238 2.4664 -1.4745 20 1 12.8239 0.8665 -3.1120 21 1 11.4698 2.7951 -2.5391 22 6 11.5352 3.6014 0.1949 23 6 11.7507 3.9789 1.6619 24 6 12.9443 4.8917 1.7756 25 8 13.5599 5.2076 0.7849 26 8 13.3238 5.3539 2.9773 27 6 4.3230 2.4561 0.0052 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.1484 -0.8283 0.0012 32 1 6.6223 3.9799 0.0016 33 1 8.1413 1.3097 0.0040 34 1 12.7449 -0.8033 -0.8837 35 1 12.4206 3.0898 -0.1824 36 1 11.3599 4.5040 -0.3906 37 1 10.8652 4.4905 2.0392 38 1 11.9260 3.0764 2.2474 39 1 14.0956 5.9361 3.0001 40 1 3.9619 3.4739 0.0095 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606629992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:53 Heat of formation + Delta-G solvation = -186.443591 kcal Electronic energy + Delta-G solvation = -27814.714331 eV Core-core repulsion = 23368.905378 eV Total energy + Delta-G solvation = -4445.808954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.83172 -41.49313 -41.21207 -40.76179 -37.50966 -37.42563 -36.98524 -35.21890 -34.37641 -34.19754 -32.66313 -30.44176 -28.60791 -27.00943 -26.76471 -25.04082 -24.25453 -22.35536 -22.16519 -21.34392 -20.57109 -19.35269 -18.76886 -18.57784 -18.21828 -17.98163 -17.81541 -17.63648 -17.04991 -17.03675 -17.01979 -16.58194 -16.13612 -15.76615 -15.39494 -14.87017 -14.60743 -14.43889 -14.31402 -14.28923 -14.16746 -13.95800 -13.67730 -13.50913 -13.17058 -12.97516 -12.90373 -12.63658 -12.58728 -12.05784 -11.85860 -11.82357 -11.82269 -11.72832 -11.70942 -11.26994 -11.03807 -10.66756 -9.84253 -9.05165 -8.57529 -6.19804 -0.50260 0.14385 1.12707 1.17653 1.29241 1.38976 1.39563 1.56091 1.86128 1.92402 1.99020 2.13748 2.47524 2.77104 2.96319 3.43775 3.71525 3.79783 3.85102 3.89270 4.24441 4.30512 4.32566 4.36107 4.36582 4.42404 4.55374 4.60803 4.67910 4.75650 4.84114 4.91023 5.00719 5.18960 5.25922 5.30622 5.46044 5.53775 5.87483 6.03279 6.16964 6.64400 6.88554 6.94901 7.31399 7.67879 8.54974 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.016307 B = 0.002429 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.604062 B =11523.977116 C =12604.463218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.545 3.455 4 O -0.539 6.539 5 C -0.254 4.254 6 C 0.092 3.908 7 O -0.161 6.161 8 C -0.002 4.002 9 C -0.017 4.017 10 C -0.171 4.171 11 C 0.506 3.494 12 O -0.618 6.618 13 N -0.462 5.462 14 C -0.342 4.342 15 H 0.099 0.901 16 C 0.045 3.955 17 N -0.881 5.881 18 Si 0.907 3.093 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.272 1.272 22 C 0.110 3.890 23 C -0.117 4.117 24 C 0.497 3.503 25 O -0.552 6.552 26 O -0.504 6.504 27 C -0.118 4.118 28 H 0.062 0.938 29 H 0.138 0.862 30 H 0.063 0.937 31 H 0.266 0.734 32 H 0.163 0.837 33 H 0.135 0.865 34 H 0.282 0.718 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.429 0.571 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.383 -0.957 4.161 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.270 6.270 3 C 0.391 3.609 4 O -0.430 6.430 5 C -0.256 4.256 6 C 0.020 3.980 7 O -0.054 6.054 8 C -0.050 4.050 9 C -0.037 4.037 10 C -0.192 4.192 11 C 0.301 3.699 12 O -0.507 6.507 13 N -0.181 5.181 14 C -0.469 4.469 15 H 0.116 0.884 16 C -0.161 4.161 17 N -0.517 5.517 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.204 1.204 21 H -0.196 1.196 22 C -0.014 4.014 23 C -0.156 4.156 24 C 0.340 3.660 25 O -0.444 6.444 26 O -0.318 6.318 27 C -0.138 4.138 28 H 0.081 0.919 29 H 0.156 0.844 30 H 0.082 0.918 31 H 0.282 0.718 32 H 0.180 0.820 33 H 0.152 0.848 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.291 0.709 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -14.371 -0.603 3.818 14.882 hybrid contribution 0.968 0.757 -0.790 1.461 sum -13.403 0.154 3.028 13.742 Atomic orbital electron populations 1.23618 0.73946 1.06075 1.02672 1.86523 1.25461 1.31075 1.83982 1.20084 0.87512 0.81652 0.71618 1.90837 1.67094 1.37160 1.47944 1.19688 0.90754 0.95112 1.20089 1.26064 0.78594 1.00939 0.92408 1.84125 1.31053 1.21363 1.68876 1.19353 0.94792 0.80134 1.10716 1.20647 0.88592 0.98802 0.95683 1.22150 0.92330 1.01377 1.03324 1.17424 0.84772 0.87864 0.79819 1.90690 1.87100 1.16424 1.56446 1.43669 1.04375 1.06245 1.63835 1.18971 1.16344 0.80161 1.31431 0.88351 1.25729 0.96901 0.95950 0.97552 1.69736 1.26388 1.16453 1.39102 0.86429 0.79678 0.79292 0.81269 1.19463 1.20400 1.19639 1.21368 0.89649 0.94744 0.95610 1.21570 0.95208 0.99712 0.99096 1.23282 0.84348 0.77892 0.80458 1.90706 1.55941 1.58083 1.39639 1.84497 1.51534 1.63211 1.32534 1.22040 0.90096 1.00228 1.01387 0.91905 0.84439 0.91838 0.71810 0.82008 0.84771 0.90784 0.91624 0.91482 0.86525 0.86001 0.70920 0.80945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 113.37 1.20 1.53 16 2 O -0.35 -6.13 10.41 -56.71 -0.59 -6.72 16 3 C 0.54 12.53 7.96 70.22 0.56 13.08 16 4 O -0.54 -15.50 16.73 19.77 0.33 -15.17 16 5 C -0.25 -5.70 6.16 -20.09 -0.12 -5.82 16 6 C 0.09 1.69 11.98 67.75 0.81 2.51 16 7 O -0.16 -4.14 10.10 -1.80 -0.02 -4.15 16 8 C 0.00 -0.06 6.77 22.72 0.15 0.09 16 9 C -0.02 -0.53 9.37 22.53 0.21 -0.32 16 10 C -0.17 -6.56 8.74 22.46 0.20 -6.36 16 11 C 0.51 22.52 7.36 85.02 0.63 23.14 16 12 O -0.62 -29.14 15.75 -4.74 -0.07 -29.22 16 13 N -0.46 -21.32 2.12 -645.78 -1.37 -22.68 16 14 C -0.34 -16.83 8.83 84.13 0.74 -16.09 16 15 H 0.10 5.01 6.94 -2.91 -0.02 4.99 16 16 C 0.05 2.30 5.29 84.97 0.45 2.75 16 17 N -0.88 -46.46 13.95 21.69 0.30 -46.16 16 18 Si 0.91 42.17 25.05 68.60 1.72 43.89 16 19 H -0.27 -12.42 6.71 99.48 0.67 -11.76 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 22 C 0.11 4.80 3.29 86.38 0.28 5.08 16 23 C -0.12 -4.15 6.10 29.85 0.18 -3.97 16 24 C 0.50 16.24 8.33 71.24 0.59 16.83 16 25 O -0.55 -21.65 16.74 21.94 0.37 -21.28 16 26 O -0.50 -11.97 13.42 -51.35 -0.69 -12.66 16 27 C -0.12 -2.93 10.64 22.73 0.24 -2.69 16 28 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.27 2.20 8.06 -2.91 -0.02 2.17 16 32 H 0.16 4.91 7.46 -2.91 -0.02 4.89 16 33 H 0.13 5.25 6.05 -2.91 -0.02 5.24 16 34 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 35 H 0.07 3.04 3.75 -2.39 -0.01 3.03 16 36 H 0.07 3.07 7.46 -2.39 -0.02 3.05 16 37 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 38 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 39 H 0.43 5.87 9.10 -74.05 -0.67 5.19 16 40 H 0.17 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -71.20 362.46 6.51 -64.69 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.41 Total: 19.69 kcal Atomic # 6 Polarization: 23.64 SS G_CDS: 6.12 Total: 29.77 kcal Atomic # 7 Polarization: -67.78 SS G_CDS: -1.07 Total: -68.84 kcal Atomic # 8 Polarization: -88.53 SS G_CDS: -0.67 Total: -89.20 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.72 Total: 43.89 kcal Total: -71.20 6.51 -64.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606629992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.753 kcal (2) G-P(sol) polarization free energy of solvation -71.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds