Wall clock time and date at job start Tue Mar 31 2020 19:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38043 * 120.06342 * 2 1 4 4 C 1.38288 * 120.11973 * 180.02562 * 3 2 1 5 5 S 1.76200 * 119.88375 * 180.02562 * 4 3 2 6 6 O 1.42100 * 106.40054 * 23.52242 * 5 4 3 7 7 O 1.42102 * 106.40445 * 156.44020 * 5 4 3 8 8 N 1.65600 * 107.22089 * 269.98212 * 5 4 3 9 9 C 1.46500 * 119.99956 * 65.00250 * 8 5 4 10 10 H 1.08999 * 109.47441 * 24.99684 * 9 8 5 11 11 C 1.53007 * 109.46884 * 264.99986 * 9 8 5 12 12 C 1.50694 * 109.47444 * 144.99836 * 9 8 5 13 13 H 1.08004 * 119.99969 * 0.02562 * 12 9 8 14 14 C 1.37872 * 120.00317 * 179.97438 * 12 9 8 15 15 N 1.31520 * 119.99970 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 120.00308 * 179.97438 * 14 12 9 17 17 H 1.48508 * 109.47004 * 90.00100 * 16 14 12 18 18 H 1.48501 * 109.47651 * 210.00151 * 16 14 12 19 19 H 1.48498 * 109.47426 * 330.00594 * 16 14 12 20 20 C 1.38342 * 120.23692 * 0.02562 * 4 3 2 21 21 C 1.38002 * 120.11461 * 359.97438 * 20 4 3 22 22 C 1.39278 * 120.05452 * 180.02562 * 2 1 3 23 23 C 1.48464 * 120.11925 * 0.25464 * 22 2 1 24 24 N 1.34044 * 126.67367 * 359.40938 * 23 22 2 25 25 N 1.28986 * 107.27191 * 179.89266 * 24 23 22 26 26 N 1.28737 * 108.93831 * 0.37728 * 25 24 23 27 27 H 0.97007 * 125.33873 * 179.78833 * 26 25 24 28 28 N 1.28869 * 109.32001 * 359.75740 * 26 25 24 29 29 H 1.09002 * 109.46818 * 269.98279 * 1 2 3 30 30 H 1.09002 * 109.46526 * 29.97490 * 1 2 3 31 31 H 1.08997 * 109.47183 * 149.98156 * 1 2 3 32 32 H 1.08001 * 119.94065 * 0.04267 * 3 2 1 33 33 H 0.96993 * 120.00028 * 244.99601 * 8 5 4 34 34 H 1.08998 * 109.47053 * 59.99606 * 11 9 8 35 35 H 1.08992 * 109.46913 * 180.02562 * 11 9 8 36 36 H 1.08999 * 109.46835 * 300.00069 * 11 9 8 37 37 H 0.96996 * 119.99995 * 179.97438 * 15 14 12 38 38 H 1.07993 * 119.94118 * 179.97438 * 20 4 3 39 39 H 1.08000 * 120.06018 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1986 1.1947 0.0000 4 6 3.5815 1.1961 -0.0005 5 16 4.4579 2.7247 0.0002 6 8 3.5733 3.6941 0.5452 7 8 5.7417 2.4509 0.5443 8 7 4.7016 3.1508 -1.5814 9 6 3.5571 3.4671 -2.4395 10 1 2.7226 3.8022 -1.8235 11 6 3.1447 2.2177 -3.2206 12 6 3.9394 4.5595 -3.4046 13 1 4.9355 4.9762 -3.3814 14 6 3.0180 5.0262 -4.3178 15 7 1.8051 4.5183 -4.3464 16 14 3.4917 6.3808 -5.5136 17 1 4.0434 5.7765 -6.7529 18 1 2.2909 7.1877 -5.8486 19 1 4.5174 7.2551 -4.8902 20 6 4.2793 0.0016 -0.0016 21 6 3.5978 -1.1984 -0.0016 22 6 2.2046 -1.2055 -0.0005 23 6 1.4662 -2.4935 -0.0068 24 7 0.1353 -2.6534 -0.0013 25 7 -0.0980 -3.9219 -0.0123 26 7 1.0239 -4.5531 -0.0163 27 1 1.1249 -5.5179 -0.0215 28 7 1.9918 -3.7023 -0.0132 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3632 0.8903 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6587 2.1301 0.0007 33 1 5.6020 3.1911 -1.9396 34 1 2.8682 1.4276 -2.5226 35 1 2.2935 2.4531 -3.8594 36 1 3.9791 1.8826 -3.8367 37 1 1.1567 4.8470 -4.9887 38 1 5.3592 0.0082 -0.0024 39 1 4.1435 -2.1305 -0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609412093.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:10 Heat of formation + Delta-G solvation = 78.514492 kcal Electronic energy + Delta-G solvation = -26882.318285 eV Core-core repulsion = 22955.337150 eV Total energy + Delta-G solvation = -3926.981136 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.72513 -39.48393 -36.74582 -35.47945 -35.33081 -34.82302 -33.87601 -32.69631 -32.19770 -30.84552 -28.32044 -27.14758 -25.33143 -25.19330 -24.44558 -22.12176 -21.71602 -20.96239 -19.46691 -18.78419 -17.52455 -17.40505 -17.29308 -16.49855 -15.99241 -15.73611 -15.11672 -14.63649 -14.25622 -14.22023 -13.88148 -13.62158 -13.36434 -12.98483 -12.67905 -12.49691 -12.27856 -12.17708 -12.04674 -11.76476 -11.64425 -11.59504 -11.52663 -11.36721 -11.25763 -11.08318 -10.99238 -10.94795 -10.64460 -10.43822 -10.35134 -10.10165 -9.24642 -9.04770 -8.74511 -8.64628 -8.30311 -6.13416 -4.20446 0.27205 0.88356 1.00752 1.31149 1.95888 2.02641 3.26256 3.33490 3.36531 3.39486 3.44311 3.77747 3.93364 4.26318 4.36311 4.61326 4.76975 4.97209 5.03149 5.18307 5.19737 5.27274 5.40130 5.52422 5.74881 5.84446 5.92007 6.03088 6.11234 6.16084 6.31247 6.33147 6.47812 6.75216 6.78380 6.82373 6.99151 7.55206 7.65477 7.83966 7.88338 7.99594 8.25124 8.81949 9.45501 10.92698 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.003526 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.373840 B = 7939.062979 C = 9060.512932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.058 4.058 3 C -0.014 4.014 4 C -0.643 4.643 5 S 2.687 3.313 6 O -0.957 6.957 7 O -0.979 6.979 8 N -1.097 6.097 9 C 0.268 3.732 10 H 0.052 0.948 11 C -0.160 4.160 12 C -0.521 4.521 13 H 0.065 0.935 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.901 3.099 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.031 4.031 21 C -0.101 4.101 22 C 0.017 3.983 23 C 0.222 3.778 24 N -0.259 5.259 25 N -0.053 5.053 26 N -0.227 5.227 27 H 0.475 0.525 28 N -0.290 5.290 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.151 0.849 33 H 0.410 0.590 34 H 0.014 0.986 35 H 0.094 0.906 36 H 0.033 0.967 37 H 0.264 0.736 38 H 0.145 0.855 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.748 -16.995 7.701 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.062 4.062 3 C -0.033 4.033 4 C -0.728 4.728 5 S 2.774 3.226 6 O -0.947 6.947 7 O -0.969 6.969 8 N -0.858 5.858 9 C 0.164 3.836 10 H 0.070 0.930 11 C -0.220 4.220 12 C -0.561 4.561 13 H 0.083 0.917 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.729 3.271 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.051 4.051 21 C -0.121 4.121 22 C 0.014 3.986 23 C -0.058 4.058 24 N -0.132 5.132 25 N -0.048 5.048 26 N -0.072 5.072 27 H 0.329 0.671 28 N -0.142 5.142 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.168 0.832 33 H 0.244 0.756 34 H 0.033 0.967 35 H 0.112 0.888 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.163 0.837 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.437 -16.943 8.424 18.976 hybrid contribution 0.686 -0.434 -1.270 1.508 sum -0.751 -17.377 7.154 18.807 Atomic orbital electron populations 1.21235 0.89391 1.04956 1.03301 1.20045 0.97233 0.91205 0.97668 1.20866 0.91995 0.98729 0.91758 1.31453 1.06430 1.21424 1.13512 1.02024 0.73200 0.73755 0.73610 1.93582 1.67167 1.56707 1.77250 1.93527 1.39538 1.85971 1.77888 1.55521 1.16867 1.83394 1.30037 1.18648 0.82586 0.93321 0.89090 0.93005 1.22315 1.02708 0.96427 1.00514 1.21209 0.99080 1.19057 1.16746 0.91696 1.24902 0.94837 0.96836 0.97269 1.69856 1.04083 1.42166 1.36465 0.86448 0.78087 0.81645 0.80936 1.20656 1.21091 1.19767 1.20769 1.00345 0.90436 0.93504 1.21161 0.92203 0.98982 0.99804 1.17359 0.92226 0.86464 1.02556 1.23685 0.88259 0.92339 1.01480 1.76193 1.13704 1.05596 1.17718 1.78961 1.10862 1.00473 1.14459 1.47725 1.01186 1.12408 1.45929 0.67062 1.74936 1.17798 0.99652 1.21828 0.90677 0.90666 0.88337 0.83161 0.75565 0.96676 0.88764 0.94740 0.92572 0.83700 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.20 36.01 0.33 -1.35 16 2 C -0.06 -0.84 5.91 -104.30 -0.62 -1.46 16 3 C -0.01 -0.23 8.22 -39.63 -0.33 -0.55 16 4 C -0.64 -10.34 5.07 -39.52 -0.20 -10.54 16 5 S 2.69 49.10 5.72 -107.50 -0.61 48.49 16 6 O -0.96 -20.32 16.61 -57.17 -0.95 -21.27 16 7 O -0.98 -18.48 17.27 -57.17 -0.99 -19.47 16 8 N -1.10 -21.30 5.46 -5.88 -0.03 -21.33 16 9 C 0.27 6.20 2.90 -69.08 -0.20 6.00 16 10 H 0.05 1.30 7.50 -51.93 -0.39 0.91 16 11 C -0.16 -3.52 9.29 37.16 0.35 -3.18 16 12 C -0.52 -13.40 8.76 -34.44 -0.30 -13.71 16 13 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -23.79 11.32 55.43 0.63 -23.16 16 16 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 C -0.03 -0.44 9.51 -39.63 -0.38 -0.81 16 21 C -0.10 -1.29 9.70 -39.26 -0.38 -1.67 16 22 C 0.02 0.24 5.88 -104.89 -0.62 -0.38 16 23 C 0.22 2.80 7.79 -156.30 -1.22 1.59 16 24 N -0.26 -3.26 9.08 32.16 0.29 -2.97 16 25 N -0.05 -0.55 13.47 60.35 0.81 0.27 16 26 N -0.23 -1.73 7.90 60.35 0.48 -1.26 16 27 H 0.48 1.20 8.96 -340.36 -3.05 -1.85 16 28 N -0.29 -3.05 12.08 32.17 0.39 -2.66 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 31 H 0.10 1.27 5.15 -51.93 -0.27 1.01 16 32 H 0.15 2.39 7.60 -52.49 -0.40 1.99 16 33 H 0.41 7.19 8.83 -34.47 -0.30 6.88 16 34 H 0.01 0.28 6.17 -51.93 -0.32 -0.04 16 35 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 38 H 0.15 1.75 7.61 -52.49 -0.40 1.36 16 39 H 0.14 1.43 7.88 -52.49 -0.41 1.02 16 LS Contribution 343.54 15.07 5.18 5.18 Total: -1.00 -32.63 343.54 -10.15 -42.78 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.67 Total: 4.51 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -3.65 Total: -24.47 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 2.57 Total: -51.12 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -1.94 Total: -40.74 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 49.10 SS G_CDS: -0.61 Total: 48.49 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.63 -10.15 -42.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609412093.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.297 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds