Wall clock time and date at job start Tue Mar 31 2020 19:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38043 * 120.06342 * 2 1 4 4 C 1.38288 * 120.11973 * 180.02562 * 3 2 1 5 5 S 1.76200 * 119.88375 * 180.02562 * 4 3 2 6 6 O 1.42100 * 106.40054 * 23.52242 * 5 4 3 7 7 O 1.42102 * 106.40445 * 156.44020 * 5 4 3 8 8 N 1.65600 * 107.22089 * 269.98212 * 5 4 3 9 9 C 1.46500 * 119.99956 * 65.00250 * 8 5 4 10 10 H 1.08999 * 109.47441 * 24.99684 * 9 8 5 11 11 C 1.53007 * 109.46884 * 264.99986 * 9 8 5 12 12 C 1.50694 * 109.47444 * 144.99836 * 9 8 5 13 13 H 1.08004 * 119.99969 * 0.02562 * 12 9 8 14 14 C 1.37872 * 120.00317 * 179.97438 * 12 9 8 15 15 N 1.31520 * 119.99970 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 120.00308 * 179.97438 * 14 12 9 17 17 H 1.48508 * 109.47004 * 90.00100 * 16 14 12 18 18 H 1.48501 * 109.47651 * 210.00151 * 16 14 12 19 19 H 1.48498 * 109.47426 * 330.00594 * 16 14 12 20 20 C 1.38342 * 120.23692 * 0.02562 * 4 3 2 21 21 C 1.38002 * 120.11461 * 359.97438 * 20 4 3 22 22 C 1.39278 * 120.05452 * 180.02562 * 2 1 3 23 23 C 1.48464 * 120.11925 * 0.25464 * 22 2 1 24 24 N 1.34044 * 126.67367 * 359.40938 * 23 22 2 25 25 N 1.28986 * 107.27191 * 179.89266 * 24 23 22 26 26 N 1.28737 * 108.93831 * 0.37728 * 25 24 23 27 27 H 0.97007 * 125.33873 * 179.78833 * 26 25 24 28 28 N 1.28869 * 109.32001 * 359.75740 * 26 25 24 29 29 H 1.09002 * 109.46818 * 269.98279 * 1 2 3 30 30 H 1.09002 * 109.46526 * 29.97490 * 1 2 3 31 31 H 1.08997 * 109.47183 * 149.98156 * 1 2 3 32 32 H 1.08001 * 119.94065 * 0.04267 * 3 2 1 33 33 H 0.96993 * 120.00028 * 244.99601 * 8 5 4 34 34 H 1.08998 * 109.47053 * 59.99606 * 11 9 8 35 35 H 1.08992 * 109.46913 * 180.02562 * 11 9 8 36 36 H 1.08999 * 109.46835 * 300.00069 * 11 9 8 37 37 H 0.96996 * 119.99995 * 179.97438 * 15 14 12 38 38 H 1.07993 * 119.94118 * 179.97438 * 20 4 3 39 39 H 1.08000 * 120.06018 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1986 1.1947 0.0000 4 6 3.5815 1.1961 -0.0005 5 16 4.4579 2.7247 0.0002 6 8 3.5733 3.6941 0.5452 7 8 5.7417 2.4509 0.5443 8 7 4.7016 3.1508 -1.5814 9 6 3.5571 3.4671 -2.4395 10 1 2.7226 3.8022 -1.8235 11 6 3.1447 2.2177 -3.2206 12 6 3.9394 4.5595 -3.4046 13 1 4.9355 4.9762 -3.3814 14 6 3.0180 5.0262 -4.3178 15 7 1.8051 4.5183 -4.3464 16 14 3.4917 6.3808 -5.5136 17 1 4.0434 5.7765 -6.7529 18 1 2.2909 7.1877 -5.8486 19 1 4.5174 7.2551 -4.8902 20 6 4.2793 0.0016 -0.0016 21 6 3.5978 -1.1984 -0.0016 22 6 2.2046 -1.2055 -0.0005 23 6 1.4662 -2.4935 -0.0068 24 7 0.1353 -2.6534 -0.0013 25 7 -0.0980 -3.9219 -0.0123 26 7 1.0239 -4.5531 -0.0163 27 1 1.1249 -5.5179 -0.0215 28 7 1.9918 -3.7023 -0.0132 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3632 0.8903 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6587 2.1301 0.0007 33 1 5.6020 3.1911 -1.9396 34 1 2.8682 1.4276 -2.5226 35 1 2.2935 2.4531 -3.8594 36 1 3.9791 1.8826 -3.8367 37 1 1.1567 4.8470 -4.9887 38 1 5.3592 0.0082 -0.0024 39 1 4.1435 -2.1305 -0.0020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609412093.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:10 Heat of formation + Delta-G solvation = 54.419305 kcal Electronic energy + Delta-G solvation = -26883.363131 eV Core-core repulsion = 22955.337150 eV Total energy + Delta-G solvation = -3928.025981 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.55313 -40.58247 -38.29906 -37.23546 -36.89433 -35.71541 -34.78978 -34.08996 -33.73745 -31.89148 -30.08629 -28.20160 -27.20499 -26.20865 -25.36353 -23.17766 -22.78447 -22.76814 -20.44957 -20.09972 -19.14031 -18.61863 -18.22371 -17.84022 -17.45297 -17.18331 -16.71548 -16.09242 -15.41461 -15.34294 -15.16872 -14.94318 -14.50420 -14.37859 -14.12082 -13.99241 -13.57927 -13.42916 -13.30552 -13.17955 -13.08635 -12.97736 -12.93311 -12.78729 -12.50854 -12.42976 -12.33599 -12.21502 -12.12745 -12.04674 -11.95562 -11.60801 -11.08380 -10.56517 -10.19699 -10.01173 -9.83094 -8.10887 -6.24250 -0.82617 -0.45408 0.07677 0.21250 1.02704 1.35045 1.47124 1.49247 1.58487 2.13558 2.41951 2.47733 2.54166 2.83569 3.03393 3.19095 3.35348 3.74146 3.82477 4.01080 4.15950 4.28966 4.32194 4.42814 4.57350 4.70654 4.81944 4.86051 4.93919 4.99040 5.04340 5.06664 5.18733 5.26841 5.44554 5.57039 5.62635 5.69263 5.80349 6.08224 6.15703 6.45471 6.85830 7.04454 7.44826 8.94204 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.003526 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.373840 B = 7939.062979 C = 9060.512932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.032 4.032 4 C -0.652 4.652 5 S 2.702 3.298 6 O -0.994 6.994 7 O -0.984 6.984 8 N -1.098 6.098 9 C 0.273 3.727 10 H 0.025 0.975 11 C -0.147 4.147 12 C -0.542 4.542 13 H 0.066 0.934 14 C 0.019 3.981 15 N -0.911 5.911 16 Si 0.959 3.041 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.271 1.271 20 C -0.031 4.031 21 C -0.092 4.092 22 C 0.020 3.980 23 C 0.204 3.796 24 N -0.280 5.280 25 N -0.056 5.056 26 N -0.195 5.195 27 H 0.496 0.504 28 N -0.282 5.282 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.139 0.861 33 H 0.418 0.582 34 H 0.035 0.965 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.265 0.735 38 H 0.166 0.834 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.007 -19.277 7.598 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.069 4.069 3 C -0.051 4.051 4 C -0.741 4.741 5 S 2.794 3.206 6 O -0.984 6.984 7 O -0.974 6.974 8 N -0.859 5.859 9 C 0.168 3.832 10 H 0.043 0.957 11 C -0.207 4.207 12 C -0.581 4.581 13 H 0.084 0.916 14 C -0.182 4.182 15 N -0.550 5.550 16 Si 0.785 3.215 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.195 1.195 20 C -0.050 4.050 21 C -0.112 4.112 22 C 0.017 3.983 23 C -0.076 4.076 24 N -0.152 5.152 25 N -0.050 5.050 26 N -0.046 5.046 27 H 0.356 0.644 28 N -0.135 5.135 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.156 0.844 33 H 0.254 0.746 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.183 0.817 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.652 -19.210 8.321 20.945 hybrid contribution 0.427 0.060 -1.164 1.241 sum -0.225 -19.150 7.157 20.445 Atomic orbital electron populations 1.21241 0.88574 1.04831 1.03969 1.20167 0.97961 0.91074 0.97721 1.20847 0.92129 0.99043 0.93080 1.30963 1.06327 1.20612 1.16201 1.01248 0.72723 0.73951 0.72689 1.93532 1.67954 1.59093 1.77803 1.93510 1.39985 1.86251 1.77681 1.55313 1.16442 1.84148 1.29963 1.18336 0.82842 0.93332 0.88708 0.95686 1.22119 1.01730 0.96485 1.00361 1.21596 0.99226 1.19943 1.17370 0.91629 1.25636 0.94867 0.98809 0.98841 1.69976 1.04798 1.43163 1.37071 0.85535 0.77673 0.79161 0.79113 1.19887 1.21082 1.19538 1.21063 1.01384 0.89943 0.92630 1.21454 0.91920 0.99622 0.98246 1.17531 0.92813 0.86763 1.01227 1.23520 0.88416 0.92524 1.03102 1.76170 1.13916 1.06611 1.18483 1.78922 1.11400 0.99979 1.14719 1.47800 1.00091 1.13303 1.43392 0.64427 1.74886 1.18178 0.99225 1.21182 0.89626 0.90990 0.88194 0.84369 0.74613 0.94565 0.91284 0.94251 0.92579 0.81698 0.81452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.20 71.24 0.66 -2.62 16 2 C -0.07 -1.87 5.91 -19.66 -0.12 -1.99 16 3 C -0.03 -1.01 8.22 22.24 0.18 -0.83 16 4 C -0.65 -20.69 5.07 22.31 0.11 -20.57 16 5 S 2.70 99.58 5.72 -56.49 -0.32 99.25 16 6 O -0.99 -43.65 16.61 -128.00 -2.13 -45.78 16 7 O -0.98 -36.51 17.27 -128.00 -2.21 -38.72 16 8 N -1.10 -42.95 5.46 -172.52 -0.94 -43.89 16 9 C 0.27 12.90 2.90 44.25 0.13 13.02 16 10 H 0.03 1.32 7.50 -2.39 -0.02 1.31 16 11 C -0.15 -6.52 9.29 71.98 0.67 -5.86 16 12 C -0.54 -28.17 8.76 25.60 0.22 -27.95 16 13 H 0.07 3.31 7.81 -2.91 -0.02 3.28 16 14 C 0.02 0.99 5.30 84.65 0.45 1.44 16 15 N -0.91 -49.67 11.32 21.45 0.24 -49.43 16 16 Si 0.96 41.88 29.54 68.60 2.03 43.91 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 18 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 20 C -0.03 -0.80 9.51 22.24 0.21 -0.59 16 21 C -0.09 -2.10 9.70 22.48 0.22 -1.88 16 22 C 0.02 0.51 5.88 -20.04 -0.12 0.39 16 23 C 0.20 4.69 7.79 137.38 1.07 5.76 16 24 N -0.28 -6.54 9.08 -52.18 -0.47 -7.02 16 25 N -0.06 -1.02 13.47 37.02 0.50 -0.52 16 26 N -0.19 -2.37 7.90 37.02 0.29 -2.07 16 27 H 0.50 0.77 8.96 -347.52 -3.12 -2.35 16 28 N -0.28 -5.03 12.08 -52.13 -0.63 -5.66 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 1.82 8.09 -2.39 -0.02 1.80 16 31 H 0.10 2.52 5.15 -2.39 -0.01 2.51 16 32 H 0.14 4.67 7.60 -2.91 -0.02 4.65 16 33 H 0.42 14.60 8.83 -96.75 -0.85 13.75 16 34 H 0.04 1.40 6.17 -2.39 -0.01 1.38 16 35 H 0.07 3.43 6.07 -2.39 -0.01 3.42 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 38 H 0.17 3.55 7.61 -2.91 -0.02 3.53 16 39 H 0.17 2.81 7.88 -2.91 -0.02 2.78 16 Total: -1.00 -69.59 343.54 -2.79 -72.38 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -2.83 Total: 19.22 kcal Atomic # 6 Polarization: -45.35 SS G_CDS: 3.69 Total: -41.66 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -1.01 Total: -108.60 kcal Atomic # 8 Polarization: -80.16 SS G_CDS: -4.34 Total: -84.50 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 99.58 SS G_CDS: -0.32 Total: 99.25 kcal Total: -69.59 -2.79 -72.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609412093.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.797 kcal (2) G-P(sol) polarization free energy of solvation -69.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds