Wall clock time and date at job start Tue Mar 31 2020 19:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38045 * 120.05749 * 2 1 4 4 C 1.38290 * 120.11843 * 180.27658 * 3 2 1 5 5 S 1.76197 * 119.88515 * 179.77098 * 4 3 2 6 6 O 1.42100 * 106.40432 * 156.18585 * 5 4 3 7 7 O 1.42100 * 106.40250 * 23.26058 * 5 4 3 8 8 N 1.65606 * 107.21394 * 269.72406 * 5 4 3 9 9 C 1.46497 * 120.00213 * 64.99953 * 8 5 4 10 10 H 1.09003 * 109.46733 * 335.00276 * 9 8 5 11 11 C 1.53000 * 109.47145 * 94.99840 * 9 8 5 12 12 C 1.50694 * 109.47115 * 214.99914 * 9 8 5 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 9 8 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.38341 * 120.23427 * 359.49227 * 4 3 2 21 21 C 1.38009 * 120.11608 * 0.27380 * 20 4 3 22 22 C 1.39278 * 120.05934 * 179.79290 * 2 1 3 23 23 C 1.48460 * 120.11733 * 359.97438 * 22 2 1 24 24 N 1.34044 * 126.67645 * 359.67119 * 23 22 2 25 25 N 1.28982 * 107.26951 * 179.83081 * 24 23 22 26 26 N 1.28728 * 108.94383 * 0.43297 * 25 24 23 27 27 H 0.96998 * 125.34297 * 179.73934 * 26 25 24 28 28 N 1.28870 * 109.31603 * 359.72201 * 26 25 24 29 29 H 1.08999 * 109.47477 * 270.20680 * 1 2 3 30 30 H 1.08999 * 109.47602 * 30.20762 * 1 2 3 31 31 H 1.09007 * 109.47216 * 150.20864 * 1 2 3 32 32 H 1.08008 * 119.94503 * 0.04973 * 3 2 1 33 33 H 0.97006 * 119.99827 * 244.99362 * 8 5 4 34 34 H 1.08997 * 109.47359 * 180.02562 * 11 9 8 35 35 H 1.09007 * 109.47356 * 300.00099 * 11 9 8 36 36 H 1.09000 * 109.47156 * 59.99824 * 11 9 8 37 37 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 38 38 H 1.08001 * 119.94128 * 180.25848 * 20 4 3 39 39 H 1.07997 * 120.05408 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1948 0.0000 4 6 3.5813 1.1963 -0.0058 5 16 4.4576 2.7249 -0.0118 6 8 5.7414 2.4537 0.5336 7 8 3.5729 3.6967 0.5286 8 7 4.7013 3.1438 -1.5954 9 6 3.5569 3.4560 -2.4551 10 1 2.6669 2.9580 -2.0702 11 6 3.3283 4.9687 -2.4706 12 6 3.8352 2.9756 -3.8560 13 1 4.7711 2.4870 -4.0835 14 6 2.8953 3.1607 -4.8478 15 7 1.7558 3.7562 -4.5709 16 14 3.2406 2.5659 -6.5845 17 1 3.9042 3.6477 -7.3556 18 1 4.1298 1.3776 -6.5332 19 1 1.9623 2.1994 -7.2455 20 6 4.2792 0.0018 -0.0010 21 6 3.5978 -1.1983 0.0039 22 6 2.2046 -1.2055 0.0044 23 6 1.4663 -2.4934 0.0096 24 7 0.1355 -2.6534 0.0169 25 7 -0.0978 -3.9219 0.0157 26 7 1.0241 -4.5531 0.0173 27 1 1.1252 -5.5178 0.0205 28 7 1.9920 -3.7022 0.0136 29 1 -0.3634 0.0037 1.0276 30 1 -0.3634 0.8881 -0.5170 31 1 -0.3634 -0.8919 -0.5106 32 1 1.6584 2.1302 0.0008 33 1 5.6019 3.1826 -1.9537 34 1 2.4766 5.2010 -3.1098 35 1 3.1270 5.3163 -1.4572 36 1 4.2183 5.4667 -2.8553 37 1 1.0948 3.8867 -5.2687 38 1 5.3592 0.0085 -0.0013 39 1 4.1436 -2.1302 0.0072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609412094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:14 Heat of formation + Delta-G solvation = 77.503797 kcal Electronic energy + Delta-G solvation = -26909.810728 eV Core-core repulsion = 22982.785765 eV Total energy + Delta-G solvation = -3927.024963 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.67806 -39.40945 -36.75382 -35.45734 -35.32586 -34.77773 -33.82639 -32.64210 -32.21096 -30.78719 -28.28654 -27.09789 -25.25160 -25.19710 -24.40346 -22.07322 -21.70063 -20.94065 -19.42778 -18.77411 -17.52142 -17.35954 -17.19535 -16.36902 -16.14024 -15.70474 -15.13711 -14.61132 -14.22967 -14.17978 -13.82468 -13.55900 -13.32285 -12.95544 -12.64278 -12.47297 -12.21343 -12.14354 -12.00145 -11.72649 -11.63458 -11.59268 -11.52706 -11.24893 -11.21477 -11.11970 -11.00634 -10.90965 -10.58167 -10.45647 -10.29500 -10.12497 -9.20517 -9.02680 -8.67935 -8.64308 -8.31594 -6.15070 -4.23055 0.32687 0.92568 1.03461 1.37457 2.00507 2.07939 3.23174 3.30513 3.32335 3.44518 3.48560 3.77951 3.98390 4.27729 4.33417 4.65240 4.82679 5.02342 5.06351 5.17014 5.23282 5.32062 5.45354 5.57043 5.80166 5.88869 5.96971 6.08208 6.16486 6.20590 6.30604 6.38051 6.53036 6.81371 6.84538 7.04356 7.08449 7.56679 7.69069 7.79570 7.93147 8.02241 8.25568 8.79942 9.43436 10.90511 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.004352 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.029715 B = 6431.767502 C = 7989.129819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.058 4.058 3 C -0.015 4.015 4 C -0.642 4.642 5 S 2.688 3.312 6 O -0.980 6.980 7 O -0.959 6.959 8 N -1.097 6.097 9 C 0.274 3.726 10 H 0.042 0.958 11 C -0.159 4.159 12 C -0.526 4.526 13 H 0.064 0.936 14 C 0.066 3.934 15 N -0.885 5.885 16 Si 0.898 3.102 17 H -0.279 1.279 18 H -0.274 1.274 19 H -0.286 1.286 20 C -0.030 4.030 21 C -0.100 4.100 22 C 0.018 3.982 23 C 0.222 3.778 24 N -0.259 5.259 25 N -0.053 5.053 26 N -0.227 5.227 27 H 0.475 0.525 28 N -0.290 5.290 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.150 0.850 33 H 0.410 0.590 34 H 0.092 0.908 35 H 0.026 0.974 36 H 0.032 0.968 37 H 0.264 0.736 38 H 0.145 0.855 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 -13.495 8.829 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.061 4.061 3 C -0.034 4.034 4 C -0.728 4.728 5 S 2.775 3.225 6 O -0.970 6.970 7 O -0.949 6.949 8 N -0.859 5.859 9 C 0.170 3.830 10 H 0.060 0.940 11 C -0.218 4.218 12 C -0.566 4.566 13 H 0.082 0.918 14 C -0.137 4.137 15 N -0.523 5.523 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.199 1.199 19 H -0.212 1.212 20 C -0.049 4.049 21 C -0.121 4.121 22 C 0.014 3.986 23 C -0.057 4.057 24 N -0.132 5.132 25 N -0.048 5.048 26 N -0.073 5.073 27 H 0.329 0.671 28 N -0.142 5.142 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.168 0.832 33 H 0.244 0.756 34 H 0.111 0.889 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.163 0.837 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.215 -13.406 9.559 16.509 hybrid contribution 0.624 -1.413 -1.599 2.224 sum -0.591 -14.819 7.959 16.831 Atomic orbital electron populations 1.21222 0.89415 1.04980 1.03183 1.20036 0.97223 0.91241 0.97620 1.20861 0.91988 0.98688 0.91851 1.31373 1.06395 1.21334 1.13669 1.01998 0.73157 0.73815 0.73501 1.93525 1.39594 1.85998 1.77881 1.93574 1.67170 1.56657 1.77511 1.55559 1.16897 1.83698 1.29746 1.18559 0.81967 0.93073 0.89425 0.94011 1.22246 1.02457 0.97626 0.99509 1.21281 1.03341 1.38891 0.93056 0.91769 1.24896 0.94927 0.94881 0.99007 1.69869 1.06997 1.41853 1.33575 0.86508 0.77711 0.79118 0.84139 1.20506 1.19918 1.21151 1.20764 1.00331 0.90473 0.93358 1.21155 0.92207 0.98983 0.99773 1.17353 0.92238 0.86459 1.02511 1.23684 0.88257 0.92347 1.01425 1.76192 1.13715 1.05577 1.17709 1.78948 1.10878 1.00489 1.14496 1.47715 1.01197 1.12392 1.45970 0.67089 1.74935 1.17781 0.99648 1.21829 0.90724 0.90693 0.88359 0.83209 0.75570 0.88947 0.95489 0.94865 0.92550 0.83706 0.84379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.19 36.01 0.33 -1.44 16 2 C -0.06 -0.89 5.91 -104.31 -0.62 -1.51 16 3 C -0.01 -0.25 8.56 -39.63 -0.34 -0.58 16 4 C -0.64 -10.80 5.82 -39.52 -0.23 -11.03 16 5 S 2.69 49.03 5.65 -107.50 -0.61 48.42 16 6 O -0.98 -18.50 17.27 -57.17 -0.99 -19.49 16 7 O -0.96 -19.66 16.52 -57.17 -0.94 -20.60 16 8 N -1.10 -21.31 5.46 -5.88 -0.03 -21.34 16 9 C 0.27 6.35 2.76 -69.09 -0.19 6.15 16 10 H 0.04 1.01 7.24 -51.93 -0.38 0.63 16 11 C -0.16 -3.71 9.29 37.16 0.35 -3.37 16 12 C -0.53 -13.25 8.76 -34.44 -0.30 -13.55 16 13 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -23.60 11.32 55.43 0.63 -22.97 16 16 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 20 C -0.03 -0.45 9.51 -39.63 -0.38 -0.82 16 21 C -0.10 -1.38 9.70 -39.26 -0.38 -1.76 16 22 C 0.02 0.26 5.88 -104.90 -0.62 -0.36 16 23 C 0.22 2.99 7.79 -156.31 -1.22 1.77 16 24 N -0.26 -3.45 9.09 32.15 0.29 -3.15 16 25 N -0.05 -0.59 13.47 60.35 0.81 0.23 16 26 N -0.23 -1.88 7.90 60.35 0.48 -1.40 16 27 H 0.47 1.48 8.96 -340.38 -3.05 -1.58 16 28 N -0.29 -3.25 12.08 32.17 0.39 -2.87 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 31 H 0.10 1.35 5.16 -51.92 -0.27 1.09 16 32 H 0.15 2.44 7.60 -52.48 -0.40 2.04 16 33 H 0.41 7.19 8.83 -34.48 -0.30 6.89 16 34 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 35 H 0.03 0.59 7.64 -51.93 -0.40 0.19 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 38 H 0.15 1.87 7.61 -52.49 -0.40 1.47 16 39 H 0.14 1.55 7.88 -52.49 -0.41 1.14 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -32.27 345.55 -10.21 -42.48 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.73 Total: 5.21 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -3.69 Total: -24.88 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 2.57 Total: -51.51 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -1.93 Total: -40.09 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 49.03 SS G_CDS: -0.61 Total: 48.42 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.27 -10.21 -42.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609412094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.980 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds