Wall clock time and date at job start Tue Mar 31 2020 19:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38045 * 120.05749 * 2 1 4 4 C 1.38290 * 120.11843 * 180.27658 * 3 2 1 5 5 S 1.76197 * 119.88515 * 179.77098 * 4 3 2 6 6 O 1.42100 * 106.40432 * 156.18585 * 5 4 3 7 7 O 1.42100 * 106.40250 * 23.26058 * 5 4 3 8 8 N 1.65606 * 107.21394 * 269.72406 * 5 4 3 9 9 C 1.46497 * 120.00213 * 64.99953 * 8 5 4 10 10 H 1.09003 * 109.46733 * 335.00276 * 9 8 5 11 11 C 1.53000 * 109.47145 * 94.99840 * 9 8 5 12 12 C 1.50694 * 109.47115 * 214.99914 * 9 8 5 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 9 8 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.38341 * 120.23427 * 359.49227 * 4 3 2 21 21 C 1.38009 * 120.11608 * 0.27380 * 20 4 3 22 22 C 1.39278 * 120.05934 * 179.79290 * 2 1 3 23 23 C 1.48460 * 120.11733 * 359.97438 * 22 2 1 24 24 N 1.34044 * 126.67645 * 359.67119 * 23 22 2 25 25 N 1.28982 * 107.26951 * 179.83081 * 24 23 22 26 26 N 1.28728 * 108.94383 * 0.43297 * 25 24 23 27 27 H 0.96998 * 125.34297 * 179.73934 * 26 25 24 28 28 N 1.28870 * 109.31603 * 359.72201 * 26 25 24 29 29 H 1.08999 * 109.47477 * 270.20680 * 1 2 3 30 30 H 1.08999 * 109.47602 * 30.20762 * 1 2 3 31 31 H 1.09007 * 109.47216 * 150.20864 * 1 2 3 32 32 H 1.08008 * 119.94503 * 0.04973 * 3 2 1 33 33 H 0.97006 * 119.99827 * 244.99362 * 8 5 4 34 34 H 1.08997 * 109.47359 * 180.02562 * 11 9 8 35 35 H 1.09007 * 109.47356 * 300.00099 * 11 9 8 36 36 H 1.09000 * 109.47156 * 59.99824 * 11 9 8 37 37 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 38 38 H 1.08001 * 119.94128 * 180.25848 * 20 4 3 39 39 H 1.07997 * 120.05408 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1948 0.0000 4 6 3.5813 1.1963 -0.0058 5 16 4.4576 2.7249 -0.0118 6 8 5.7414 2.4537 0.5336 7 8 3.5729 3.6967 0.5286 8 7 4.7013 3.1438 -1.5954 9 6 3.5569 3.4560 -2.4551 10 1 2.6669 2.9580 -2.0702 11 6 3.3283 4.9687 -2.4706 12 6 3.8352 2.9756 -3.8560 13 1 4.7711 2.4870 -4.0835 14 6 2.8953 3.1607 -4.8478 15 7 1.7558 3.7562 -4.5709 16 14 3.2406 2.5659 -6.5845 17 1 3.9042 3.6477 -7.3556 18 1 4.1298 1.3776 -6.5332 19 1 1.9623 2.1994 -7.2455 20 6 4.2792 0.0018 -0.0010 21 6 3.5978 -1.1983 0.0039 22 6 2.2046 -1.2055 0.0044 23 6 1.4663 -2.4934 0.0096 24 7 0.1355 -2.6534 0.0169 25 7 -0.0978 -3.9219 0.0157 26 7 1.0241 -4.5531 0.0173 27 1 1.1252 -5.5178 0.0205 28 7 1.9920 -3.7022 0.0136 29 1 -0.3634 0.0037 1.0276 30 1 -0.3634 0.8881 -0.5170 31 1 -0.3634 -0.8919 -0.5106 32 1 1.6584 2.1302 0.0008 33 1 5.6019 3.1826 -1.9537 34 1 2.4766 5.2010 -3.1098 35 1 3.1270 5.3163 -1.4572 36 1 4.2183 5.4667 -2.8553 37 1 1.0948 3.8867 -5.2687 38 1 5.3592 0.0085 -0.0013 39 1 4.1436 -2.1302 0.0072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609412094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:13 Heat of formation + Delta-G solvation = 54.067731 kcal Electronic energy + Delta-G solvation = -26910.826992 eV Core-core repulsion = 22982.785765 eV Total energy + Delta-G solvation = -3928.041227 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.56470 -40.55854 -38.29591 -37.21313 -36.87868 -35.72293 -34.79409 -34.08152 -33.74193 -31.88283 -30.08975 -28.20858 -27.18679 -26.21878 -25.37369 -23.19582 -22.89673 -22.67441 -20.45393 -20.09999 -19.13441 -18.50874 -18.23464 -17.87686 -17.50221 -17.18506 -16.72890 -16.10166 -15.42100 -15.31816 -15.16906 -14.90450 -14.49623 -14.39353 -14.17242 -13.95274 -13.54297 -13.44208 -13.26874 -13.21658 -13.07957 -12.96178 -12.95694 -12.80446 -12.49937 -12.36386 -12.34224 -12.23927 -12.15910 -12.06671 -11.95993 -11.64116 -11.04966 -10.56281 -10.16482 -10.06678 -9.82241 -8.10145 -6.23584 -0.82366 -0.43298 0.06819 0.21271 1.02030 1.34138 1.46171 1.48271 1.56439 2.12656 2.40164 2.47690 2.54069 2.84198 3.02400 3.20066 3.35604 3.73763 3.81989 3.99961 4.15656 4.28844 4.31202 4.42559 4.55857 4.70006 4.81195 4.84954 4.94760 4.98878 5.03516 5.15752 5.21439 5.25907 5.43374 5.56328 5.63618 5.69525 5.79179 6.07743 6.13303 6.45889 6.87146 7.03343 7.45746 8.94968 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.004352 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.029715 B = 6431.767502 C = 7989.129819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.069 4.069 3 C -0.033 4.033 4 C -0.655 4.655 5 S 2.705 3.295 6 O -0.984 6.984 7 O -0.986 6.986 8 N -1.097 6.097 9 C 0.277 3.723 10 H 0.029 0.971 11 C -0.154 4.154 12 C -0.537 4.537 13 H 0.069 0.931 14 C 0.021 3.979 15 N -0.912 5.912 16 Si 0.955 3.045 17 H -0.276 1.276 18 H -0.269 1.269 19 H -0.287 1.287 20 C -0.034 4.034 21 C -0.094 4.094 22 C 0.018 3.982 23 C 0.204 3.796 24 N -0.280 5.280 25 N -0.055 5.055 26 N -0.194 5.194 27 H 0.496 0.504 28 N -0.282 5.282 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.142 0.858 33 H 0.419 0.581 34 H 0.071 0.929 35 H 0.030 0.970 36 H 0.037 0.963 37 H 0.264 0.736 38 H 0.165 0.835 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.252 -15.959 8.670 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.072 4.072 3 C -0.053 4.053 4 C -0.744 4.744 5 S 2.796 3.204 6 O -0.975 6.975 7 O -0.977 6.977 8 N -0.858 5.858 9 C 0.172 3.828 10 H 0.046 0.954 11 C -0.214 4.214 12 C -0.576 4.576 13 H 0.087 0.913 14 C -0.180 4.180 15 N -0.550 5.550 16 Si 0.781 3.219 17 H -0.201 1.201 18 H -0.193 1.193 19 H -0.213 1.213 20 C -0.053 4.053 21 C -0.115 4.115 22 C 0.014 3.986 23 C -0.076 4.076 24 N -0.151 5.151 25 N -0.050 5.050 26 N -0.046 5.046 27 H 0.356 0.644 28 N -0.135 5.135 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.159 0.841 33 H 0.254 0.746 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.183 0.817 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.407 -15.862 9.403 18.444 hybrid contribution 0.365 -0.823 -1.482 1.734 sum -0.043 -16.684 7.921 18.469 Atomic orbital electron populations 1.21224 0.88514 1.04745 1.03979 1.20206 0.98057 0.91206 0.97729 1.20892 0.92206 0.99089 0.93084 1.31046 1.06398 1.20966 1.15956 1.01247 0.72692 0.73829 0.72618 1.93511 1.40027 1.86236 1.77682 1.93533 1.67749 1.58502 1.77878 1.55363 1.16465 1.84319 1.29703 1.18293 0.82646 0.92547 0.89300 0.95352 1.22160 1.01785 0.98141 0.99266 1.21599 1.03431 1.38609 0.93978 0.91296 1.25606 0.94853 0.95151 1.02355 1.69988 1.07718 1.42836 1.34490 0.85602 0.77389 0.78773 0.80123 1.20139 1.19305 1.21333 1.21077 1.01383 0.90120 0.92694 1.21459 0.91988 0.99660 0.98350 1.17536 0.92834 0.86846 1.01335 1.23514 0.88450 0.92525 1.03098 1.76169 1.13874 1.06617 1.18482 1.78906 1.11396 0.99966 1.14716 1.47787 1.00087 1.13288 1.43410 0.64418 1.74882 1.18180 0.99210 1.21196 0.89420 0.91074 0.88353 0.84071 0.74616 0.91008 0.95066 0.94351 0.92638 0.81743 0.81494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.19 71.24 0.65 -2.80 16 2 C -0.07 -2.10 5.91 -19.66 -0.12 -2.22 16 3 C -0.03 -1.13 8.56 22.24 0.19 -0.94 16 4 C -0.66 -21.91 5.82 22.31 0.13 -21.78 16 5 S 2.71 98.74 5.65 -56.49 -0.32 98.42 16 6 O -0.98 -36.35 17.27 -128.00 -2.21 -38.56 16 7 O -0.99 -41.22 16.52 -128.00 -2.11 -43.33 16 8 N -1.10 -42.54 5.46 -172.53 -0.94 -43.48 16 9 C 0.28 12.99 2.76 44.24 0.12 13.11 16 10 H 0.03 1.42 7.24 -2.39 -0.02 1.40 16 11 C -0.15 -7.31 9.29 71.98 0.67 -6.64 16 12 C -0.54 -26.92 8.76 25.60 0.22 -26.70 16 13 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16 14 C 0.02 1.07 5.30 84.66 0.45 1.52 16 15 N -0.91 -49.18 11.32 21.45 0.24 -48.93 16 16 Si 0.96 41.04 29.54 68.60 2.03 43.07 16 17 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 20 C -0.03 -0.95 9.51 22.24 0.21 -0.74 16 21 C -0.09 -2.38 9.70 22.48 0.22 -2.16 16 22 C 0.02 0.50 5.88 -20.04 -0.12 0.38 16 23 C 0.20 5.09 7.79 137.38 1.07 6.16 16 24 N -0.28 -6.99 9.09 -52.18 -0.47 -7.46 16 25 N -0.06 -1.09 13.47 37.02 0.50 -0.59 16 26 N -0.19 -2.64 7.90 37.02 0.29 -2.35 16 27 H 0.50 1.39 8.96 -347.55 -3.12 -1.72 16 28 N -0.28 -5.51 12.08 -52.13 -0.63 -6.14 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.07 1.92 8.09 -2.39 -0.02 1.91 16 31 H 0.10 2.68 5.16 -2.38 -0.01 2.67 16 32 H 0.14 4.87 7.60 -2.91 -0.02 4.85 16 33 H 0.42 14.46 8.83 -96.74 -0.85 13.60 16 34 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 35 H 0.03 1.40 7.64 -2.38 -0.02 1.38 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 38 H 0.17 3.88 7.61 -2.91 -0.02 3.86 16 39 H 0.17 3.18 7.88 -2.91 -0.02 3.16 16 Total: -1.00 -67.72 345.55 -2.76 -70.48 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -2.83 Total: 21.68 kcal Atomic # 6 Polarization: -46.50 SS G_CDS: 3.70 Total: -42.79 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -1.01 Total: -108.96 kcal Atomic # 8 Polarization: -77.57 SS G_CDS: -4.33 Total: -81.90 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: 98.74 SS G_CDS: -0.32 Total: 98.42 kcal Total: -67.72 -2.76 -70.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609412094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.548 kcal (2) G-P(sol) polarization free energy of solvation -67.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds