Wall clock time and date at job start Tue Mar 31 2020 20:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37718 * 125.71885 * 2 1 4 4 C 1.46405 * 126.02040 * 0.04103 * 3 2 1 5 5 O 1.21639 * 120.00010 * 180.02562 * 4 3 2 6 6 O 1.34915 * 119.99822 * 359.97438 * 4 3 2 7 7 C 1.42899 * 117.00070 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47444 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.47086 * 180.02562 * 8 7 6 10 10 S 1.81006 * 109.46679 * 180.02562 * 9 8 7 11 11 C 1.76198 * 99.99668 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00170 * 359.97438 * 11 10 9 13 13 C 1.38807 * 120.00104 * 179.97438 * 11 10 9 14 14 N 1.31622 * 119.99672 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00130 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47205 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46813 * 119.99783 * 15 13 11 18 18 H 1.48496 * 109.47024 * 239.99999 * 15 13 11 19 19 C 1.38137 * 107.95899 * 180.02562 * 3 2 1 20 20 C 1.39336 * 107.42280 * 359.77817 * 19 3 2 21 21 C 1.36362 * 125.71653 * 180.02562 * 2 1 3 22 22 C 1.47916 * 125.80657 * 359.94639 * 21 2 1 23 23 N 1.34208 * 126.70197 * 359.68107 * 22 21 2 24 24 N 1.28985 * 107.24819 * 180.26614 * 23 22 21 25 25 N 1.28719 * 108.99555 * 0.02562 * 24 23 22 26 26 H 0.97000 * 125.31465 * 180.02562 * 25 24 23 27 27 N 1.28866 * 109.36898 * 359.97438 * 25 24 23 28 28 H 1.08993 * 109.47093 * 269.98065 * 1 2 3 29 29 H 1.08999 * 109.46497 * 29.97843 * 1 2 3 30 30 H 1.09001 * 109.47035 * 149.97288 * 1 2 3 31 31 H 1.08997 * 109.47572 * 300.00032 * 7 6 4 32 32 H 1.09006 * 109.47216 * 59.99803 * 7 6 4 33 33 H 1.09004 * 109.47050 * 299.99909 * 8 7 6 34 34 H 1.08993 * 109.46848 * 59.99784 * 8 7 6 35 35 H 1.08998 * 109.46807 * 299.99300 * 9 8 7 36 36 H 1.09001 * 109.47510 * 60.00306 * 9 8 7 37 37 H 0.96998 * 119.99924 * 180.02562 * 14 13 11 38 38 H 1.08003 * 126.28978 * 179.97438 * 19 3 2 39 39 H 1.08003 * 126.16293 * 180.22232 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2690 1.1181 0.0000 4 6 1.8103 2.5084 0.0008 5 8 2.6201 3.4161 0.0003 6 8 0.4893 2.7829 0.0012 7 6 0.1131 4.1615 0.0015 8 6 -1.4128 4.2738 0.0012 9 6 -1.8154 5.7499 0.0008 10 16 -3.6206 5.8827 0.0013 11 6 -3.7984 7.6357 0.0016 12 1 -2.9223 8.2673 0.0018 13 6 -5.0643 8.2050 0.0014 14 7 -6.1320 7.4352 0.0006 15 14 -5.2528 10.0634 0.0024 16 1 -3.9098 10.6972 0.0027 17 1 -5.9987 10.4859 -1.2102 18 1 -5.9996 10.4846 1.2148 19 6 3.5845 0.6968 -0.0006 20 6 3.5764 -0.6966 0.0042 21 6 2.2610 -1.1071 -0.0005 22 6 1.7923 -2.5101 0.0000 23 7 0.5175 -2.9298 0.0070 24 7 0.5395 -4.2195 0.0104 25 7 1.7636 -4.6176 0.0065 26 1 2.0520 -5.5437 0.0075 27 7 2.5461 -3.5937 -0.0001 28 1 -0.3633 -0.0003 1.0276 29 1 -0.3632 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5143 31 1 0.5134 4.6472 0.8914 32 1 0.5130 4.6474 -0.8886 33 1 -1.8127 3.7883 -0.8890 34 1 -1.8129 3.7878 0.8909 35 1 -1.4156 6.2358 0.8909 36 1 -1.4153 6.2355 -0.8892 37 1 -7.0167 7.8329 0.0001 38 1 4.4589 1.3308 -0.0011 39 1 4.4445 -1.3390 0.0084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609476009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:53 Heat of formation + Delta-G solvation = 78.613714 kcal Electronic energy + Delta-G solvation = -24874.954684 eV Core-core repulsion = 20947.977850 eV Total energy + Delta-G solvation = -3926.976833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.94745 -41.78935 -40.14960 -36.89255 -34.88389 -33.97315 -33.56764 -33.13912 -32.45635 -30.03545 -27.00443 -26.76389 -25.58642 -25.17586 -24.81529 -22.74593 -21.40835 -20.74531 -20.33299 -19.38265 -18.20805 -17.67360 -17.46272 -17.19239 -16.86859 -16.09359 -15.63243 -14.87490 -14.83072 -14.54189 -14.52029 -14.05449 -13.73527 -13.36632 -13.18778 -12.98262 -12.88759 -12.69893 -12.61760 -12.30208 -12.12186 -11.89354 -11.57948 -11.38296 -11.34812 -11.17577 -11.02516 -10.96510 -10.82835 -10.64153 -10.31269 -9.64584 -9.21369 -9.09657 -8.58120 -8.37158 -6.58016 -6.26233 -3.97213 0.31997 0.73559 1.47637 1.63108 2.19423 2.49971 2.52403 2.86129 3.17689 3.19946 3.21588 3.29124 3.52910 3.72560 4.18673 4.42478 4.56639 4.69819 4.90129 4.97067 5.07246 5.09164 5.11054 5.13688 5.18396 5.34837 5.45294 5.53236 5.60985 5.69252 5.74772 5.85067 5.88942 6.10953 6.21118 6.33908 6.41793 6.46519 6.55424 6.63520 7.58364 7.59984 7.62270 8.33957 9.20487 10.81990 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.021690 B = 0.001853 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.595655 B =15108.643259 C =16368.182950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.389 5.389 3 C -0.009 4.009 4 C 0.535 3.465 5 O -0.493 6.493 6 O -0.351 6.351 7 C 0.070 3.930 8 C -0.097 4.097 9 C -0.115 4.115 10 S -0.125 6.125 11 C -0.518 4.518 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.869 5.869 15 Si 0.920 3.080 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.104 4.104 20 C -0.148 4.148 21 C 0.108 3.892 22 C 0.245 3.755 23 N -0.273 5.273 24 N -0.042 5.042 25 N -0.223 5.223 26 H 0.478 0.522 27 N -0.278 5.278 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.267 0.733 38 H 0.161 0.839 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.300 -24.627 -0.080 31.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.063 5.063 3 C -0.123 4.123 4 C 0.380 3.620 5 O -0.380 6.380 6 O -0.268 6.268 7 C -0.005 4.005 8 C -0.135 4.135 9 C -0.263 4.263 10 S 0.104 5.896 11 C -0.666 4.666 12 H 0.092 0.908 13 C -0.138 4.138 14 N -0.505 5.505 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.130 4.130 20 C -0.175 4.175 21 C -0.012 4.012 22 C -0.035 4.035 23 N -0.147 5.147 24 N -0.037 5.037 25 N -0.070 5.070 26 H 0.333 0.667 27 N -0.131 5.131 28 H 0.105 0.895 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.179 0.821 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 17.598 -25.550 -0.075 31.024 hybrid contribution 1.174 1.965 0.031 2.290 sum 18.772 -23.584 -0.044 30.143 Atomic orbital electron populations 1.22646 0.74233 1.06413 1.05223 1.44101 1.07623 1.03874 1.50719 1.19580 0.90657 0.83734 1.18323 1.19668 0.81249 0.87520 0.73610 1.90928 1.55114 1.45978 1.45973 1.86151 1.24902 1.31852 1.83889 1.22955 0.97028 0.77698 1.02803 1.21299 0.90930 0.97068 1.04229 1.23181 1.03476 0.96248 1.03413 1.84642 0.96609 1.11498 1.96885 1.22740 0.95198 0.90069 1.58581 0.90760 1.25023 0.94889 0.99361 0.94523 1.70022 0.98019 1.35231 1.47202 0.86093 0.78389 0.83029 0.77906 1.19560 1.20543 1.20539 1.21254 0.94340 0.94508 1.02888 1.21085 0.94090 0.94687 1.07632 1.16976 0.90054 0.80915 1.13278 1.22393 0.86224 0.92756 1.02148 1.76198 1.19247 1.00838 1.18379 1.78929 1.03981 1.06584 1.14201 1.47759 1.02308 1.11184 1.45734 0.66687 1.74995 1.22295 0.93875 1.21917 0.89498 0.87428 0.87988 0.91105 0.91120 0.90375 0.90343 0.91686 0.91682 0.92294 0.82118 0.82426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.51 10.13 59.85 0.61 1.11 16 2 N -0.39 -4.06 3.19 -115.78 -0.37 -4.43 16 3 C -0.01 -0.10 6.87 -81.97 -0.56 -0.66 16 4 C 0.54 7.11 7.90 34.02 0.27 7.38 16 5 O -0.49 -7.63 16.65 -19.37 -0.32 -7.95 16 6 O -0.35 -4.58 7.51 -41.08 -0.31 -4.88 16 7 C 0.07 0.97 5.38 37.16 0.20 1.17 16 8 C -0.10 -1.50 5.59 -26.73 -0.15 -1.65 16 9 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 10 S -0.12 -3.19 21.44 -107.50 -2.30 -5.49 16 11 C -0.52 -14.68 9.50 30.94 0.29 -14.39 16 12 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 13 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 14 N -0.87 -25.73 13.22 55.49 0.73 -24.99 16 15 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 C -0.10 -1.00 10.60 -39.21 -0.42 -1.42 16 20 C -0.15 -1.26 10.78 -39.34 -0.42 -1.68 16 21 C 0.11 1.05 6.87 -82.05 -0.56 0.49 16 22 C 0.24 2.27 8.03 -156.24 -1.26 1.02 16 23 N -0.27 -2.65 10.51 32.09 0.34 -2.32 16 24 N -0.04 -0.33 13.46 60.35 0.81 0.48 16 25 N -0.22 -1.09 7.90 60.35 0.48 -0.61 16 26 H 0.48 -0.04 8.96 -340.34 -3.05 -3.09 16 27 N -0.28 -2.04 12.39 32.10 0.40 -1.65 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.11 1.02 6.13 -51.93 -0.32 0.70 16 30 H 0.10 0.90 6.39 -51.93 -0.33 0.56 16 31 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 32 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 36 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 39 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -34.55 360.64 -9.07 -43.62 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -7.05 Total: -4.86 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.89 Total: -8.75 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 2.39 Total: -33.51 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.63 Total: -12.83 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -2.30 Total: -5.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.55 -9.07 -43.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609476009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.238 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds