Wall clock time and date at job start Tue Mar 31 2020 20:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37718 * 125.71885 * 2 1 4 4 C 1.46405 * 126.02040 * 0.04103 * 3 2 1 5 5 O 1.21639 * 120.00010 * 180.02562 * 4 3 2 6 6 O 1.34915 * 119.99822 * 359.97438 * 4 3 2 7 7 C 1.42899 * 117.00070 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47444 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.47086 * 180.02562 * 8 7 6 10 10 S 1.81006 * 109.46679 * 180.02562 * 9 8 7 11 11 C 1.76198 * 99.99668 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00170 * 359.97438 * 11 10 9 13 13 C 1.38807 * 120.00104 * 179.97438 * 11 10 9 14 14 N 1.31622 * 119.99672 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00130 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47205 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46813 * 119.99783 * 15 13 11 18 18 H 1.48496 * 109.47024 * 239.99999 * 15 13 11 19 19 C 1.38137 * 107.95899 * 180.02562 * 3 2 1 20 20 C 1.39336 * 107.42280 * 359.77817 * 19 3 2 21 21 C 1.36362 * 125.71653 * 180.02562 * 2 1 3 22 22 C 1.47916 * 125.80657 * 359.94639 * 21 2 1 23 23 N 1.34208 * 126.70197 * 359.68107 * 22 21 2 24 24 N 1.28985 * 107.24819 * 180.26614 * 23 22 21 25 25 N 1.28719 * 108.99555 * 0.02562 * 24 23 22 26 26 H 0.97000 * 125.31465 * 180.02562 * 25 24 23 27 27 N 1.28866 * 109.36898 * 359.97438 * 25 24 23 28 28 H 1.08993 * 109.47093 * 269.98065 * 1 2 3 29 29 H 1.08999 * 109.46497 * 29.97843 * 1 2 3 30 30 H 1.09001 * 109.47035 * 149.97288 * 1 2 3 31 31 H 1.08997 * 109.47572 * 300.00032 * 7 6 4 32 32 H 1.09006 * 109.47216 * 59.99803 * 7 6 4 33 33 H 1.09004 * 109.47050 * 299.99909 * 8 7 6 34 34 H 1.08993 * 109.46848 * 59.99784 * 8 7 6 35 35 H 1.08998 * 109.46807 * 299.99300 * 9 8 7 36 36 H 1.09001 * 109.47510 * 60.00306 * 9 8 7 37 37 H 0.96998 * 119.99924 * 180.02562 * 14 13 11 38 38 H 1.08003 * 126.28978 * 179.97438 * 19 3 2 39 39 H 1.08003 * 126.16293 * 180.22232 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2690 1.1181 0.0000 4 6 1.8103 2.5084 0.0008 5 8 2.6201 3.4161 0.0003 6 8 0.4893 2.7829 0.0012 7 6 0.1131 4.1615 0.0015 8 6 -1.4128 4.2738 0.0012 9 6 -1.8154 5.7499 0.0008 10 16 -3.6206 5.8827 0.0013 11 6 -3.7984 7.6357 0.0016 12 1 -2.9223 8.2673 0.0018 13 6 -5.0643 8.2050 0.0014 14 7 -6.1320 7.4352 0.0006 15 14 -5.2528 10.0634 0.0024 16 1 -3.9098 10.6972 0.0027 17 1 -5.9987 10.4859 -1.2102 18 1 -5.9996 10.4846 1.2148 19 6 3.5845 0.6968 -0.0006 20 6 3.5764 -0.6966 0.0042 21 6 2.2610 -1.1071 -0.0005 22 6 1.7923 -2.5101 0.0000 23 7 0.5175 -2.9298 0.0070 24 7 0.5395 -4.2195 0.0104 25 7 1.7636 -4.6176 0.0065 26 1 2.0520 -5.5437 0.0075 27 7 2.5461 -3.5937 -0.0001 28 1 -0.3633 -0.0003 1.0276 29 1 -0.3632 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5143 31 1 0.5134 4.6472 0.8914 32 1 0.5130 4.6474 -0.8886 33 1 -1.8127 3.7883 -0.8890 34 1 -1.8129 3.7878 0.8909 35 1 -1.4156 6.2358 0.8909 36 1 -1.4153 6.2355 -0.8892 37 1 -7.0167 7.8329 0.0001 38 1 4.4589 1.3308 -0.0011 39 1 4.4445 -1.3390 0.0084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609476009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:52 Heat of formation + Delta-G solvation = 57.155877 kcal Electronic energy + Delta-G solvation = -24875.885165 eV Core-core repulsion = 20947.977850 eV Total energy + Delta-G solvation = -3927.907315 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.53789 -42.59181 -41.15782 -37.99176 -35.48784 -34.96429 -34.60210 -34.49870 -33.91643 -30.83671 -28.27055 -27.65778 -27.48571 -25.84281 -25.63742 -23.63405 -22.71164 -21.45397 -21.16230 -20.02690 -19.57126 -18.99381 -18.26816 -18.20932 -17.93014 -16.98568 -16.90051 -16.50320 -16.10691 -15.75335 -15.51451 -15.23655 -14.71897 -14.46509 -14.17835 -14.02250 -13.95417 -13.76822 -13.45348 -13.41014 -13.15468 -12.99505 -12.96776 -12.58817 -12.50148 -12.41797 -12.40909 -12.17495 -12.01018 -11.97314 -11.50485 -11.47042 -11.16065 -10.35377 -9.93724 -9.33870 -8.67491 -8.38456 -6.14419 -0.40074 0.09193 0.70293 1.09824 1.27053 1.38541 1.40390 1.51600 1.64171 1.77160 1.84912 2.00108 2.26950 2.53147 2.96287 3.09190 3.28162 3.52304 3.84032 3.86037 3.97164 3.97783 4.13382 4.21251 4.31045 4.33921 4.38785 4.46607 4.52619 4.69116 4.81651 4.89082 5.02359 5.04838 5.11123 5.32987 5.40462 5.48978 5.56943 5.72596 5.81171 6.17975 6.57504 7.01869 7.04462 8.71058 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.021690 B = 0.001853 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.595655 B =15108.643259 C =16368.182950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.395 5.395 3 C -0.036 4.036 4 C 0.538 3.462 5 O -0.520 6.520 6 O -0.348 6.348 7 C 0.079 3.921 8 C -0.084 4.084 9 C -0.092 4.092 10 S -0.184 6.184 11 C -0.540 4.540 12 H 0.074 0.926 13 C 0.016 3.984 14 N -0.906 5.906 15 Si 0.994 3.006 16 H -0.263 1.263 17 H -0.272 1.272 18 H -0.272 1.272 19 C -0.097 4.097 20 C -0.141 4.141 21 C 0.107 3.893 22 C 0.229 3.771 23 N -0.296 5.296 24 N -0.051 5.051 25 N -0.193 5.193 26 H 0.498 0.502 27 N -0.271 5.271 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.272 0.728 38 H 0.174 0.826 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.930 -25.478 -0.062 32.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.069 5.069 3 C -0.150 4.150 4 C 0.385 3.615 5 O -0.409 6.409 6 O -0.265 6.265 7 C 0.003 3.997 8 C -0.123 4.123 9 C -0.241 4.241 10 S 0.045 5.955 11 C -0.688 4.688 12 H 0.092 0.908 13 C -0.189 4.189 14 N -0.543 5.543 15 Si 0.816 3.184 16 H -0.187 1.187 17 H -0.197 1.197 18 H -0.197 1.197 19 C -0.122 4.122 20 C -0.168 4.168 21 C -0.013 4.013 22 C -0.051 4.051 23 N -0.169 5.169 24 N -0.045 5.045 25 N -0.045 5.045 26 H 0.358 0.642 27 N -0.124 5.124 28 H 0.108 0.892 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.191 0.809 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 19.224 -26.437 -0.057 32.688 hybrid contribution 0.768 1.997 0.025 2.139 sum 19.992 -24.441 -0.032 31.576 Atomic orbital electron populations 1.22636 0.74030 1.06251 1.05394 1.44162 1.07874 1.03888 1.50952 1.19513 0.91513 0.83067 1.20885 1.19935 0.80716 0.88147 0.72738 1.90908 1.55503 1.46887 1.47652 1.86149 1.25265 1.31110 1.83943 1.22708 0.95451 0.78378 1.03131 1.21111 0.92333 0.94281 1.04549 1.23074 0.98295 0.99067 1.03683 1.84606 1.02879 1.11006 1.97053 1.23095 0.95646 0.91189 1.58838 0.90795 1.26054 0.94414 1.04714 0.93765 1.70145 0.98632 1.37526 1.47968 0.84969 0.78676 0.76467 0.78281 1.18711 1.19695 1.19690 1.21533 0.94023 0.95223 1.01450 1.21382 0.94413 0.94393 1.06610 1.17272 0.90506 0.81079 1.12463 1.22398 0.86402 0.92962 1.03303 1.76181 1.19803 1.01620 1.19285 1.78884 1.04870 1.06063 1.14727 1.47839 1.01411 1.11890 1.43326 0.64220 1.74959 1.22257 0.93845 1.21358 0.89176 0.87973 0.87668 0.90850 0.90823 0.90079 0.90105 0.91361 0.91334 0.91921 0.80858 0.79910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.04 10.13 127.77 1.29 2.33 16 2 N -0.39 -7.96 3.19 -520.22 -1.66 -9.61 16 3 C -0.04 -0.81 6.87 40.32 0.28 -0.53 16 4 C 0.54 14.10 7.90 69.95 0.55 14.65 16 5 O -0.52 -15.93 16.65 19.38 0.32 -15.61 16 6 O -0.35 -8.92 7.51 -58.30 -0.44 -9.35 16 7 C 0.08 2.12 5.38 71.98 0.39 2.51 16 8 C -0.08 -2.57 5.59 30.60 0.17 -2.40 16 9 C -0.09 -3.58 5.67 71.98 0.41 -3.17 16 10 S -0.18 -9.59 21.44 -56.49 -1.21 -10.80 16 11 C -0.54 -30.92 9.50 67.96 0.65 -30.27 16 12 H 0.07 4.09 7.80 -2.91 -0.02 4.06 16 13 C 0.02 0.88 5.49 84.86 0.47 1.35 16 14 N -0.91 -54.29 13.22 21.65 0.29 -54.01 16 15 Si 0.99 43.81 29.55 68.60 2.03 45.84 16 16 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 19 C -0.10 -1.71 10.60 22.51 0.24 -1.48 16 20 C -0.14 -2.12 10.78 22.43 0.24 -1.88 16 21 C 0.11 1.94 6.87 40.90 0.28 2.22 16 22 C 0.23 3.92 8.03 137.11 1.10 5.02 16 23 N -0.30 -5.45 10.51 -52.40 -0.55 -6.00 16 24 N -0.05 -0.72 13.46 37.02 0.50 -0.22 16 25 N -0.19 -1.46 7.90 37.02 0.29 -1.16 16 26 H 0.50 -1.35 8.96 -347.51 -3.12 -4.47 16 27 N -0.27 -3.37 12.39 -52.35 -0.65 -4.02 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.10 1.94 6.13 -2.39 -0.01 1.93 16 30 H 0.10 1.84 6.39 -2.39 -0.02 1.82 16 31 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 32 H 0.07 1.96 8.13 -2.38 -0.02 1.94 16 33 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.07 2.60 8.14 -2.40 -0.02 2.58 16 36 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -74.41 360.64 2.99 -71.42 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -2.00 Total: 5.17 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 6.06 Total: -11.64 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -1.78 Total: -75.02 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.12 Total: -24.96 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -9.59 SS G_CDS: -1.21 Total: -10.80 kcal Total: -74.41 2.99 -71.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609476009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.577 kcal (2) G-P(sol) polarization free energy of solvation -74.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds