Wall clock time and date at job start Tue Mar 31 2020 20:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34709 * 116.99623 * 2 1 4 4 O 1.21463 * 119.99960 * 359.97438 * 3 2 1 5 5 C 1.47754 * 120.00034 * 180.02562 * 3 2 1 6 6 C 1.39696 * 120.04559 * 359.97438 * 5 3 2 7 7 C 1.38540 * 120.09002 * 179.97438 * 6 5 3 8 8 O 1.35933 * 119.90237 * 180.02562 * 7 6 5 9 9 C 1.42901 * 117.00030 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46844 * 180.02562 * 9 8 7 11 11 O 1.21274 * 120.00081 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99852 * 180.02562 * 10 9 8 13 13 C 1.46490 * 120.00107 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47339 * 179.97438 * 13 12 10 15 15 H 1.08006 * 119.99795 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00572 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99776 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00543 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46904 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47446 * 119.99445 * 18 16 14 21 21 H 1.48496 * 109.47107 * 239.99689 * 18 16 14 22 22 C 1.38582 * 120.19560 * 0.04917 * 7 6 5 23 23 C 1.39653 * 120.08834 * 359.97434 * 22 7 6 24 24 C 1.47753 * 120.04499 * 179.97438 * 23 22 7 25 25 O 1.21468 * 120.00455 * 180.02562 * 24 23 22 26 26 O 1.34711 * 120.00211 * 0.02562 * 24 23 22 27 27 C 1.39334 * 120.04904 * 180.27806 * 5 3 2 28 28 H 1.09000 * 109.47007 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47319 * 299.99946 * 1 2 3 30 30 H 1.08999 * 109.47554 * 60.00273 * 1 2 3 31 31 H 1.08004 * 119.95190 * 0.02562 * 6 5 3 32 32 H 1.08994 * 109.47395 * 300.00384 * 9 8 7 33 33 H 1.09002 * 109.46590 * 59.99996 * 9 8 7 34 34 H 0.97001 * 119.99642 * 359.97438 * 12 10 9 35 35 H 1.09002 * 109.46807 * 299.99228 * 13 12 10 36 36 H 1.09002 * 109.47323 * 59.99255 * 13 12 10 37 37 H 0.97001 * 119.99909 * 180.02562 * 17 16 14 38 38 H 1.07997 * 119.95417 * 179.97438 * 22 7 6 39 39 H 0.96700 * 117.00324 * 180.02562 * 26 24 23 40 40 H 1.07995 * 120.09627 * 359.97438 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2189 -0.0005 5 6 3.5390 1.2777 -0.0006 6 6 4.3009 0.1068 -0.0006 7 6 5.6844 0.1784 -0.0016 8 8 6.4220 -0.9635 -0.0022 9 6 7.8435 -0.8175 -0.0027 10 6 8.4883 -2.1796 -0.0039 11 8 7.7984 -3.1771 -0.0037 12 7 9.8316 -2.2893 -0.0040 13 6 10.4584 -3.6134 -0.0057 14 6 11.9575 -3.4595 -0.0062 15 1 12.3992 -2.4739 -0.0057 16 6 12.7653 -4.5768 -0.0082 17 7 12.2275 -5.7771 -0.0093 18 14 14.6235 -4.3861 -0.0095 19 1 14.9729 -2.9429 -0.0086 20 1 15.1884 -5.0334 1.2017 21 1 15.1864 -5.0305 -1.2232 22 6 6.3186 1.4105 -0.0017 23 6 5.5647 2.5860 -0.0012 24 6 6.2419 3.8992 -0.0007 25 8 5.5854 4.9212 0.0002 26 8 7.5875 3.9632 -0.0012 27 6 4.1725 2.5187 0.0053 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.8106 -0.8555 -0.0006 32 1 8.1522 -0.2691 -0.8926 33 1 8.1528 -0.2694 0.8873 34 1 10.3833 -1.4915 -0.0037 35 1 10.1495 -4.1627 0.8837 36 1 10.1494 -4.1606 -0.8963 37 1 12.7957 -6.5632 -0.0104 38 1 7.3974 1.4617 -0.0021 39 1 7.9851 4.8447 -0.0004 40 1 3.5866 3.4259 0.0098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610203882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:24 Heat of formation + Delta-G solvation = -219.185396 kcal Electronic energy + Delta-G solvation = -27415.244507 eV Core-core repulsion = 22968.015763 eV Total energy + Delta-G solvation = -4447.228745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32285 -40.56882 -40.11272 -38.79487 -37.49174 -36.70980 -36.46344 -34.33315 -32.53511 -32.42264 -30.94407 -28.99459 -28.19498 -26.75814 -25.29129 -24.52557 -22.72456 -21.70275 -21.28409 -20.01802 -19.09623 -18.40936 -17.95216 -17.33628 -16.88468 -16.78223 -16.54173 -16.45689 -16.43671 -16.00687 -15.89109 -15.23519 -15.13010 -14.35516 -14.32720 -14.21069 -13.77562 -13.71993 -13.38874 -12.87877 -12.86323 -12.56674 -12.28569 -12.10686 -12.05844 -11.97986 -11.89180 -11.29477 -11.19748 -11.19283 -11.03869 -10.96416 -10.92562 -10.39422 -9.76042 -9.47763 -9.26758 -8.84339 -8.78640 -8.05974 -6.24486 -4.32197 -0.07701 0.44789 1.81857 2.09659 2.30010 2.55743 2.61909 3.07582 3.18731 3.24122 3.26174 3.28712 3.93713 4.15384 4.21176 4.30027 4.55187 4.59748 4.63408 4.75155 4.78419 4.83272 4.87755 5.01492 5.12183 5.12911 5.18090 5.24402 5.53799 5.61644 5.69483 5.87768 5.94281 6.02149 6.89375 7.17389 7.24752 7.28532 7.39961 7.43202 7.55173 7.86658 8.42309 8.65108 8.89166 9.34469 10.85625 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.002194 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.844300 B =12760.640461 C =14737.735593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.350 6.350 3 C 0.515 3.485 4 O -0.498 6.498 5 C -0.099 4.099 6 C -0.055 4.055 7 C 0.117 3.883 8 O -0.277 6.277 9 C 0.035 3.965 10 C 0.501 3.499 11 O -0.531 6.531 12 N -0.706 5.706 13 C 0.251 3.749 14 C -0.545 4.545 15 H 0.065 0.935 16 C 0.064 3.936 17 N -0.884 5.884 18 Si 0.905 3.095 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.122 4.122 23 C -0.099 4.099 24 C 0.532 3.468 25 O -0.506 6.506 26 O -0.508 6.508 27 C -0.031 4.031 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.159 0.841 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.393 0.607 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.266 0.734 38 H 0.155 0.845 39 H 0.419 0.581 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.187 17.749 0.029 24.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.266 6.266 3 C 0.359 3.641 4 O -0.387 6.387 5 C -0.101 4.101 6 C -0.074 4.074 7 C 0.070 3.930 8 O -0.189 6.189 9 C -0.044 4.044 10 C 0.283 3.717 11 O -0.408 6.408 12 N -0.356 5.356 13 C 0.131 3.869 14 C -0.584 4.584 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.521 5.521 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.141 4.141 23 C -0.100 4.100 24 C 0.375 3.625 25 O -0.395 6.395 26 O -0.321 6.321 27 C -0.050 4.050 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.176 0.824 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.225 0.775 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.172 0.828 39 H 0.278 0.722 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.271 16.756 0.028 24.064 hybrid contribution 1.596 1.192 -0.002 1.991 sum -15.676 17.947 0.026 23.829 Atomic orbital electron populations 1.23351 0.75345 1.04186 1.02785 1.86565 1.24013 1.32023 1.84005 1.20867 0.88525 0.81764 0.72905 1.90867 1.66468 1.35980 1.45368 1.18615 0.89528 0.93383 1.08525 1.21015 0.90733 0.99631 0.96022 1.18793 0.91306 0.85554 0.97337 1.86272 1.17989 1.26771 1.87866 1.22781 0.79088 0.98844 1.03699 1.19780 0.83670 0.89280 0.78961 1.90727 1.62567 1.38175 1.49310 1.46362 1.04400 1.12431 1.72427 1.19188 0.91972 0.77707 0.98082 1.21227 0.90258 0.93336 1.53542 0.91711 1.24960 0.99533 0.94940 0.94597 1.69983 1.35767 0.97711 1.48635 0.86336 0.84299 0.78308 0.77812 1.19614 1.20757 1.20762 1.21897 1.01828 0.90790 0.99585 1.18580 0.92678 0.90355 1.08382 1.20620 0.80484 0.89109 0.72259 1.90926 1.66392 1.36464 1.45737 1.84539 1.21653 1.40265 1.85607 1.21166 0.92515 0.97826 0.93476 0.87590 0.91602 0.91609 0.82358 0.88926 0.88919 0.77458 0.95217 0.95226 0.92382 0.82785 0.72173 0.82726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.35 -3.26 9.80 -40.52 -0.40 -3.66 16 3 C 0.52 5.50 7.90 34.62 0.27 5.77 16 4 O -0.50 -6.32 16.12 -19.24 -0.31 -6.63 16 5 C -0.10 -1.00 5.87 -105.06 -0.62 -1.62 16 6 C -0.06 -0.56 9.55 -38.93 -0.37 -0.93 16 7 C 0.12 1.26 6.67 -39.34 -0.26 0.99 16 8 O -0.28 -3.76 9.66 -39.44 -0.38 -4.14 16 9 C 0.03 0.42 5.22 36.01 0.19 0.61 16 10 C 0.50 9.16 7.91 -10.98 -0.09 9.07 16 11 O -0.53 -12.36 16.50 -14.35 -0.24 -12.60 16 12 N -0.71 -13.47 5.55 -61.48 -0.34 -13.81 16 13 C 0.25 6.28 5.43 -5.20 -0.03 6.25 16 14 C -0.55 -14.06 9.28 -34.44 -0.32 -14.38 16 15 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 17 N -0.88 -25.23 13.29 55.43 0.74 -24.50 16 18 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.12 -1.11 8.60 -38.93 -0.33 -1.45 16 23 C -0.10 -0.94 5.87 -105.06 -0.62 -1.56 16 24 C 0.53 4.97 8.27 34.62 0.29 5.26 16 25 O -0.51 -6.09 17.12 -19.24 -0.33 -6.42 16 26 O -0.51 -3.25 12.67 -40.52 -0.51 -3.76 16 27 C -0.03 -0.31 9.13 -38.75 -0.35 -0.67 16 28 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.16 1.50 7.60 -52.48 -0.40 1.10 16 32 H 0.09 0.86 7.65 -51.93 -0.40 0.46 16 33 H 0.09 0.86 7.65 -51.93 -0.40 0.46 16 34 H 0.39 6.07 8.32 -40.82 -0.34 5.73 16 35 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.15 1.13 5.81 -52.49 -0.30 0.82 16 39 H 0.42 0.85 9.11 45.56 0.42 1.26 16 40 H 0.16 1.62 7.22 -52.49 -0.38 1.24 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -36.01 367.24 -5.98 -41.99 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -3.45 Total: 2.65 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: -1.27 Total: 10.26 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.40 Total: -38.30 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -2.17 Total: -37.21 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.01 -5.98 -41.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610203882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.200 kcal (2) G-P(sol) polarization free energy of solvation -36.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds