Wall clock time and date at job start Tue Mar 31 2020 20:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34709 * 116.99623 * 2 1 4 4 O 1.21463 * 119.99960 * 359.97438 * 3 2 1 5 5 C 1.47754 * 120.00034 * 180.02562 * 3 2 1 6 6 C 1.39696 * 120.04559 * 359.97438 * 5 3 2 7 7 C 1.38540 * 120.09002 * 179.97438 * 6 5 3 8 8 O 1.35933 * 119.90237 * 180.02562 * 7 6 5 9 9 C 1.42901 * 117.00030 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46844 * 180.02562 * 9 8 7 11 11 O 1.21274 * 120.00081 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99852 * 180.02562 * 10 9 8 13 13 C 1.46490 * 120.00107 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47339 * 179.97438 * 13 12 10 15 15 H 1.08006 * 119.99795 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00572 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99776 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00543 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46904 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47446 * 119.99445 * 18 16 14 21 21 H 1.48496 * 109.47107 * 239.99689 * 18 16 14 22 22 C 1.38582 * 120.19560 * 0.04917 * 7 6 5 23 23 C 1.39653 * 120.08834 * 359.97434 * 22 7 6 24 24 C 1.47753 * 120.04499 * 179.97438 * 23 22 7 25 25 O 1.21468 * 120.00455 * 180.02562 * 24 23 22 26 26 O 1.34711 * 120.00211 * 0.02562 * 24 23 22 27 27 C 1.39334 * 120.04904 * 180.27806 * 5 3 2 28 28 H 1.09000 * 109.47007 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47319 * 299.99946 * 1 2 3 30 30 H 1.08999 * 109.47554 * 60.00273 * 1 2 3 31 31 H 1.08004 * 119.95190 * 0.02562 * 6 5 3 32 32 H 1.08994 * 109.47395 * 300.00384 * 9 8 7 33 33 H 1.09002 * 109.46590 * 59.99996 * 9 8 7 34 34 H 0.97001 * 119.99642 * 359.97438 * 12 10 9 35 35 H 1.09002 * 109.46807 * 299.99228 * 13 12 10 36 36 H 1.09002 * 109.47323 * 59.99255 * 13 12 10 37 37 H 0.97001 * 119.99909 * 180.02562 * 17 16 14 38 38 H 1.07997 * 119.95417 * 179.97438 * 22 7 6 39 39 H 0.96700 * 117.00324 * 180.02562 * 26 24 23 40 40 H 1.07995 * 120.09627 * 359.97438 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2189 -0.0005 5 6 3.5390 1.2777 -0.0006 6 6 4.3009 0.1068 -0.0006 7 6 5.6844 0.1784 -0.0016 8 8 6.4220 -0.9635 -0.0022 9 6 7.8435 -0.8175 -0.0027 10 6 8.4883 -2.1796 -0.0039 11 8 7.7984 -3.1771 -0.0037 12 7 9.8316 -2.2893 -0.0040 13 6 10.4584 -3.6134 -0.0057 14 6 11.9575 -3.4595 -0.0062 15 1 12.3992 -2.4739 -0.0057 16 6 12.7653 -4.5768 -0.0082 17 7 12.2275 -5.7771 -0.0093 18 14 14.6235 -4.3861 -0.0095 19 1 14.9729 -2.9429 -0.0086 20 1 15.1884 -5.0334 1.2017 21 1 15.1864 -5.0305 -1.2232 22 6 6.3186 1.4105 -0.0017 23 6 5.5647 2.5860 -0.0012 24 6 6.2419 3.8992 -0.0007 25 8 5.5854 4.9212 0.0002 26 8 7.5875 3.9632 -0.0012 27 6 4.1725 2.5187 0.0053 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.8106 -0.8555 -0.0006 32 1 8.1522 -0.2691 -0.8926 33 1 8.1528 -0.2694 0.8873 34 1 10.3833 -1.4915 -0.0037 35 1 10.1495 -4.1627 0.8837 36 1 10.1494 -4.1606 -0.8963 37 1 12.7957 -6.5632 -0.0104 38 1 7.3974 1.4617 -0.0021 39 1 7.9851 4.8447 -0.0004 40 1 3.5866 3.4259 0.0098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610203882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:23 Heat of formation + Delta-G solvation = -245.591146 kcal Electronic energy + Delta-G solvation = -27416.389547 eV Core-core repulsion = 22968.015763 eV Total energy + Delta-G solvation = -4448.373784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.11622 -41.34743 -41.04776 -40.10738 -38.39657 -37.52571 -37.12148 -36.14955 -34.38109 -33.24108 -31.84314 -30.34381 -28.83960 -28.30689 -26.06950 -25.36123 -24.49873 -22.52636 -22.11035 -21.49854 -19.84820 -19.33509 -18.98978 -18.48807 -17.79596 -17.66185 -17.57486 -17.38540 -17.28445 -17.06697 -16.81803 -16.72074 -16.35188 -15.82505 -15.74129 -14.89214 -14.72447 -14.54754 -14.35271 -14.16558 -14.06405 -13.92890 -13.49747 -13.20608 -12.99012 -12.88955 -12.83017 -12.75072 -12.63514 -12.21430 -12.19386 -12.00571 -11.87456 -11.72258 -11.43654 -10.83392 -10.80565 -10.51645 -9.88009 -9.60248 -8.27284 -6.43399 -0.82468 -0.33673 1.04410 1.37040 1.46587 1.47040 1.54701 1.58392 1.62323 1.64556 1.97623 2.38491 2.47696 2.76131 3.08527 3.40574 3.46486 3.75932 3.79912 3.84078 3.93985 4.08512 4.12090 4.15377 4.27886 4.33677 4.46410 4.71139 4.76379 4.85860 4.96793 5.09082 5.14317 5.19663 5.25717 5.46960 5.50591 5.66625 5.85664 6.09018 6.50149 6.67351 6.85098 6.90163 7.25156 7.44084 8.85003 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.002194 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.844300 B =12760.640461 C =14737.735593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.517 3.483 4 O -0.524 6.524 5 C -0.103 4.103 6 C -0.053 4.053 7 C 0.107 3.893 8 O -0.306 6.306 9 C 0.046 3.954 10 C 0.496 3.504 11 O -0.590 6.590 12 N -0.698 5.698 13 C 0.265 3.735 14 C -0.552 4.552 15 H 0.089 0.911 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.984 3.016 19 H -0.250 1.250 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.103 4.103 23 C -0.102 4.102 24 C 0.540 3.460 25 O -0.539 6.539 26 O -0.497 6.497 27 C -0.032 4.032 28 H 0.133 0.867 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.160 0.840 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.414 0.586 35 H -0.010 1.010 36 H -0.010 1.010 37 H 0.268 0.732 38 H 0.181 0.819 39 H 0.439 0.561 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.529 20.068 0.030 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.362 3.638 4 O -0.415 6.415 5 C -0.104 4.104 6 C -0.072 4.072 7 C 0.061 3.939 8 O -0.219 6.219 9 C -0.032 4.032 10 C 0.282 3.718 11 O -0.470 6.470 12 N -0.350 5.350 13 C 0.143 3.857 14 C -0.590 4.590 15 H 0.107 0.893 16 C -0.197 4.197 17 N -0.570 5.570 18 Si 0.807 3.193 19 H -0.173 1.173 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.121 4.121 23 C -0.103 4.103 24 C 0.385 3.615 25 O -0.431 6.431 26 O -0.311 6.311 27 C -0.050 4.050 28 H 0.151 0.849 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.177 0.823 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.251 0.749 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.077 0.923 38 H 0.198 0.802 39 H 0.302 0.698 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.591 19.142 0.029 24.688 hybrid contribution 0.988 0.463 -0.002 1.091 sum -14.604 19.605 0.027 24.447 Atomic orbital electron populations 1.23654 0.73704 1.06080 1.03007 1.86562 1.25702 1.31286 1.83521 1.20992 0.88783 0.81772 0.72213 1.90850 1.67034 1.36796 1.46837 1.18555 0.89285 0.93430 1.09133 1.21035 0.90900 0.99650 0.95635 1.18779 0.91124 0.85368 0.98591 1.86218 1.18604 1.28427 1.88655 1.22751 0.78517 0.94367 1.07537 1.20859 0.82898 0.91394 0.76627 1.90704 1.63711 1.41083 1.51526 1.45997 1.05372 1.10996 1.72613 1.18595 0.92620 0.80089 0.94419 1.21655 0.90379 0.94426 1.52533 0.89281 1.26059 1.05167 0.94498 0.94021 1.70145 1.37916 0.98848 1.50131 0.85122 0.77389 0.79314 0.77458 1.17305 1.20761 1.20774 1.22050 1.02923 0.89563 0.97579 1.18624 0.92396 0.90924 1.08368 1.20492 0.81218 0.88356 0.71430 1.90926 1.67310 1.37409 1.47449 1.84485 1.19804 1.42080 1.84719 1.21184 0.93104 0.97505 0.93226 0.84898 0.91411 0.91422 0.82271 0.84872 0.84861 0.74889 0.99202 0.99210 0.92325 0.80179 0.69792 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.53 16 2 O -0.35 -6.50 9.80 -56.19 -0.55 -7.05 16 3 C 0.52 11.03 7.90 70.34 0.56 11.58 16 4 O -0.52 -13.47 16.12 19.95 0.32 -13.15 16 5 C -0.10 -2.02 5.87 -20.15 -0.12 -2.13 16 6 C -0.05 -1.03 9.55 22.69 0.22 -0.81 16 7 C 0.11 2.07 6.67 22.42 0.15 2.22 16 8 O -0.31 -7.69 9.66 -73.76 -0.71 -8.40 16 9 C 0.05 0.96 5.22 71.24 0.37 1.33 16 10 C 0.50 17.75 7.91 87.66 0.69 18.44 16 11 O -0.59 -28.24 16.50 16.03 0.26 -27.97 16 12 N -0.70 -26.00 5.55 -466.81 -2.59 -28.58 16 13 C 0.27 13.68 5.43 85.63 0.46 14.15 16 14 C -0.55 -28.20 9.28 25.60 0.24 -27.96 16 15 H 0.09 4.01 7.60 -2.91 -0.02 3.99 16 16 C 0.00 0.11 5.46 84.65 0.46 0.57 16 17 N -0.93 -54.57 13.29 21.45 0.28 -54.29 16 18 Si 0.98 40.50 29.54 68.60 2.03 42.52 16 19 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 20 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 22 C -0.10 -1.51 8.60 22.69 0.20 -1.32 16 23 C -0.10 -1.71 5.87 -20.15 -0.12 -1.82 16 24 C 0.54 8.75 8.27 70.34 0.58 9.34 16 25 O -0.54 -12.23 17.12 19.94 0.34 -11.89 16 26 O -0.50 -4.43 12.67 -56.21 -0.71 -5.14 16 27 C -0.03 -0.61 9.13 22.81 0.21 -0.40 16 28 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.16 2.97 7.60 -2.91 -0.02 2.95 16 32 H 0.13 1.77 7.65 -2.39 -0.02 1.75 16 33 H 0.13 1.77 7.65 -2.39 -0.02 1.75 16 34 H 0.41 11.64 8.32 -92.71 -0.77 10.87 16 35 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 36 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 38 H 0.18 1.65 5.81 -2.91 -0.02 1.63 16 39 H 0.44 0.15 9.11 -74.06 -0.67 -0.52 16 40 H 0.15 3.08 7.22 -2.91 -0.02 3.06 16 Total: -1.00 -82.47 367.24 3.46 -79.01 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -0.31 Total: 10.23 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: 5.10 Total: 24.71 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -2.30 Total: -82.87 kcal Atomic # 8 Polarization: -72.56 SS G_CDS: -1.05 Total: -73.61 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -82.47 3.46 -79.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610203882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.580 kcal (2) G-P(sol) polarization free energy of solvation -82.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds